AHB141
Library AH
(Link to library)
Clone ID AHB141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15683-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AHB141 (AHB141Q) /CSM/AH/AHB1-B/AHB141Q.Seq.d/
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGGGGGGGTTTTCCCCCCAANAAAAAAANNTNNANNCCCCCCCCAAAA
AANCCCTTTTTNGNNAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
llktptnththivylhfiiyi*IYTNKYNIKKKKKKKKKKKKKKGGVFPPXKKXXXPPQK
XPFXXK---


Translated Amino Acid sequence (All Frames)
Frame A:
iiknshkhthshciftlynlyiniyk*iqykkkkkkkkkkkkkkrggfppxkkxxxpppk
xpfxxkk---


Frame B:
llktptnththivylhfiiyi*IYTNKYNIKKKKKKKKKKKKKKGGVFPPXKKXXXPPQK
XPFXXK---


Frame C:
y*klpqthtltlyiytl*fiykyiqinti*kkkkkkkkkkkkkkggfspqxkxxxxppkk
xlfxxk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK377 (VHK377Q) /CSM/VH/VHK3-D/VHK377Q.Seq.d/ 74 9e-13
SHI648 (SHI648Q) /CSM/SH/SHI6-B/SHI648Q.Seq.d/ 74 9e-13
SHH506 (SHH506Q) /CSM/SH/SHH5-A/SHH506Q.Seq.d/ 74 9e-13
SHG585 (SHG585Q) /CSM/SH/SHG5-D/SHG585Q.Seq.d/ 74 9e-13
SHG415 (SHG415Q) /CSM/SH/SHG4-A/SHG415Q.Seq.d/ 74 9e-13
SHG367 (SHG367Q) /CSM/SH/SHG3-C/SHG367Q.Seq.d/ 74 9e-13
SHG192 (SHG192Q) /CSM/SH/SHG1-D/SHG192Q.Seq.d/ 74 9e-13
CHO463 (CHO463Q) /CSM/CH/CHO4-C/CHO463Q.Seq.d/ 74 9e-13
CHO143 (CHO143Q) /CSM/CH/CHO1-B/CHO143Q.Seq.d/ 74 9e-13
CHN413 (CHN413Q) /CSM/CH/CHN4-A/CHN413Q.Seq.d/ 74 9e-13

own update 2002. 9.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC126186|AC126186.4 Rattus norvegicus clone CH230-467A3, WORKING DRAFT SEQUENCE. 40 0.002 3
AC094696|AC094696.4 Rattus norvegicus clone CH230-5F3, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 42 0.035 2
AC126726|AC126726.4 Rattus norvegicus clone CH230-6A21, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces. 42 0.046 2
CB054869|CB054869.1 NISC_gm06f09.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE:3291785 3', mRNA sequence. 34 0.083 2
AC112866|AC112866.4 Rattus norvegicus clone CH230-375M13, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 0.087 2
BQ391322|BQ391322.1 NISC_mq18a09.x1 NICHD XGC Emb5 Silurana tropicalis cDNA clone IMAGE:5308697 3', mRNA sequence. 34 0.092 2
AL844867|AL844867.3 Mouse DNA sequence from clone RP23-17B8 on chromosome X. 44 0.094 2
AC118772|AC118772.5 Rattus norvegicus 10 BAC CH230-404C20 (Children's Hospital Oakland Research Institute) complete sequence. 38 0.096 2
AC109206|AC109206.5 Mus musculus clone RP23-142F22, WORKING DRAFT SEQUENCE, 3 ordered pieces. 42 0.11 2
AC093939|AC093939.7 Rattus norvegicus clone CH230-172N14, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 0.11 4
dna update 2004. 2.25
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 255,532,742
protein update 2009. 4.27
PSORT

psg: 0.03 gvh: 0.07 alm: 0.75 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.81 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for AHB141 is nuc

5' end seq. ID AHB141F
5' end seq.
>AHB141F.Seq
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGGGGGGGTTTTCCCCCCAANAAAAAAANNTNNANNCCCCCCCCAAAA
AANCCCTTTTTNGNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 212
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -