NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB128
Library AH
(Link to library)
Clone ID AHB128
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16408-1
Original site URL
Representative seq. ID AHB128P
(Link to Original site)
Representative DNA sequence 
>AHB128 (AHB128Q) /CSM/AH/AHB1-B/AHB128Q.Seq.d/
AAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAA
ATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXX
XXXGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATT
ACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAA
GATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAA
GATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAA
GAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAA
CAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTT
AAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAG
AACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTG
GCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCT
CCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAA
CAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAA
TAATTTAATCATTCTTNCTTTTTAAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
kiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---AVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDEN
EQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVE
QLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQ
QSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
knnkftik*lfflfflfkv*iieiikinikkker*kk---

---AVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDEN
EQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVE
QLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQ
QSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxflkn

Frame B:
kiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---l*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkm
nkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnksln
nlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnn
nlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilxf*kt

Frame C:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---ckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*
trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*t
t*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrett
is*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sfxlfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        640   0.0
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        640   0.0
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        640   0.0
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        640   0.0
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        640   0.0
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        640   0.0
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        640   0.0
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        640   0.0
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        640   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        640   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   571   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-31  17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   2e-11  22
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   9e-10  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-09  23
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   4e-09  16
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   1e-08  17
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    36   1e-08  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   2e-08  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   3e-08  22
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   231   3e-59
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.1
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.6
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   8.0
protein update 2009. 4.27
PSORT 

 psg: 0.57  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for AHB128 is nuc
5' end seq. ID AHB128F
5' end seq. 
>AHB128F.Seq
AAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAA
ATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 123
3' end seq. ID AHB128Z
3' end seq. 
>AHB128Z.Seq
NNNNNNNNNNGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAA
TGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAA
TGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAA
TGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGA
GAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCA
ACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGA
ACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCA
ACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGC
TGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACA
ACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCA
AGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAA
TCAAAAATAATTTAATCATTCTTNCTTTTTAAAAAACT
Length of 3' end seq. 698
Connected seq. ID AHB128P
Connected seq. 
>AHB128P.Seq
AAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAA
ATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA-------
---GCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATT
ACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAA
GATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAA
GATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAA
GAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAA
CAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTT
AAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAG
AACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTG
GCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCT
CCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAA
CAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAA
TAATTTAATCATTCTTNCTTTTTAAAAAACT
Length of connected seq. 801
Full length Seq ID -
Full length Seq. -
Length of full length seq. -