AHB119 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHB119
Library	AH (Link to library)
Clone ID	AHB119 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16405-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB1-A/AHB119Q.Seq.d/
Representative seq. ID	AHB119P (Link to Original site)
Representative DNA sequence	>AHB119 (AHB119Q) /CSM/AH/AHB1-A/AHB119Q.Seq.d/ AAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAAAAATTATTAA AAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAATAATATTACT GATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGC AATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCG TTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAA TTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAG ATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGA TTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAG TAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATT TGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTXXXXXXXXX XATAATAAAAATACCNCAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAA AGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACA ACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAA AAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTA ACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAAT GAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGT TTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTT AACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCA AACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATA GGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTT AAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAA TTTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAA ATAAATAAATAAATG
sequence update	2002.10.25
Translated Amino Acid sequence	kfsnnislffsfikiikkpnskKKSLIKMEKKIILLILFLFFISGYSMNPPTPIDA IYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEPFSR LWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYLRLF GGPNFLINSIDVNKPF--- ---NKNTXVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENK IEKGILAIIRGYSFTDIXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNT DCLSCHSGSSVKNTSGVLYXLFNSTSFQYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGL IIGXTIGSVGGALAIGALAYYFKIPFRVKKFIGKKFkkkckfkitnhicvklklnkn kink*m
Translated Amino Acid sequence (All Frames)	Frame A: kiflklnfsfliffyknykakfkikkiidkngkennitdfifvlyirifnessntnrc ni*iiyinfspifypfnfvkrkrtqnngtklfqlfsswretlfipfrtilk imgyrqgmcrikycglyicfgfsilsksiqfeiktkniwryshywlifkii wwsfpyfhcktfc--- ---iikipqyllkmkry*lemkvervhsllqhslefvqdqvqhpinqfqkfqplki klkkvfqfvvivlqixsmqaqfhqklflfhvinvvyhqmkylmiviqvklilqivi livyhaipvqvkihqeyyxsyltqhhfnimsqlkklnyxhhqtlvkxmlklnhpnhqmv *vxqlvvlvvlllsvllpitlkylfvknlvknfkkknvnlksqityvnnltknk inkink Frame B: kfsnnislffsfikiikkpnskKKSLIKMEKKIILLILFLFFISGYSMNPPTPIDA IYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEPFSR LWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYLRLF GGPNFLINSIDVNKPF--- ---*kyxsicsrkdinsrkreftlcynihwssfrtkynidlyktndfrnsnhk* nkryfsnnswlfyryxqcklnsfirncssfmfrmfitknt**fknyyky lfimpfrfkcekyirsiixpilniisichnrnixsitkrsxrcniiqtikwf nnrxynwcwwcscyrcsclllntfscekiyrkilkkkminhkshmckiktlkik inkin Frame C: nfpkiikflffnfllkllksqiqnkknh*kwkrkyyfyfcslyqdiqilqhqmq ymminhlhflivishilpvfciktkknpelkwhqiisivllmerdivysiqmnhsqd ygvvtvryvleinqillrivhlmlrvyiiqkytinivknqkhlvkisllahidyl vvlislliplminll--- ---NKNTXVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENK IEKGILAIIRGYSFTDIXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNT DCLSCHSGSSVKNTSGVLYXLFNSTSFQYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGL IIGXTIGSVGGALAIGALAYYFKIPFRVKKFIGKKFkkkckfkitnhicvklklnkn kink*m
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AHB119 (AHB119Q) /CSM/AH/AHB1-A/AHB119Q.Seq.d/ 1390 0.0 SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/ 1237 0.0 AHN746 (AHN746Q) /CSM/AH/AHN7-B/AHN746Q.Seq.d/ 1237 0.0 AHJ333 (AHJ333Q) /CSM/AH/AHJ3-B/AHJ333Q.Seq.d/ 1237 0.0 AHE606 (AHE606Q) /CSM/AH/AHE6-A/AHE606Q.Seq.d/ 1237 0.0 AHE257 (AHE257Q) /CSM/AH/AHE2-C/AHE257Q.Seq.d/ 1237 0.0 AHE135 (AHE135Q) /CSM/AH/AHE1-B/AHE135Q.Seq.d/ 1237 0.0 AHD222 (AHD222Q) /CSM/AH/AHD2-A/AHD222Q.Seq.d/ 1237 0.0 AHC117 (AHC117Q) /CSM/AH/AHC1-A/AHC117Q.Seq.d/ 1237 0.0 AHB666 (AHB666Q) /CSM/AH/AHB6-C/AHB666Q.Seq.d/ 1237 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U09478\|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds. 1237 0.0 2 AF258615\|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds. 1237 0.0 5 AB032076\|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds. 80 1e-30 6 AF250284\|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 44 2e-05 13 AC117070\|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 2e-04 14 U30821\|U30821.1 Cyanophora paradoxa cyanelle, complete genome. 36 7e-04 10 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.002 21 AC004688\|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 32 0.003 12 AB063522\|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2. 32 0.004 17 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 46 0.008 15
dna update	2004. 2.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value A54280(A54280) cell differentiation protein LagC precursor - sli... 357 7e-97 FJ374927_1(FJ374927\|pid:none) Dictyostelium discoideum strain QS... 347 4e-94 FJ374925_1(FJ374925\|pid:none) Dictyostelium discoideum strain QS... 347 4e-94 FJ374948_1(FJ374948\|pid:none) Dictyostelium discoideum strain QS... 347 4e-94 FJ374933_1(FJ374933\|pid:none) Dictyostelium discoideum strain QS... 347 4e-94 FJ374923_1(FJ374923\|pid:none) Dictyostelium discoideum strain QS... 347 4e-94 FJ374941_1(FJ374941\|pid:none) Dictyostelium discoideum strain QS... 346 9e-94 FJ374928_1(FJ374928\|pid:none) Dictyostelium discoideum strain QS... 334 5e-90 FJ374930_1(FJ374930\|pid:none) Dictyostelium discoideum strain QS... 334 5e-90 FJ374951_1(FJ374951\|pid:none) Dictyostelium discoideum strain QS... 334 5e-90
protein update	2009. 4.27
PSORT	psg: 1.02 gvh: 0.77 alm: 0.33 top: 0.07 tms: 0.00 mit: 0.26 mip: 0.00 nuc: 0.08 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: extracellular, including cell wall 20.0 %: cytoplasmic 12.0 %: vacuolar 8.0 %: nuclear 8.0 %: endoplasmic reticulum 4.0 %: Golgi 4.0 %: mitochondrial >> prediction for AHB119 is exc
5' end seq. ID	AHB119F
5' end seq.	>AHB119F.Seq AAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAAAAATTATTAA AAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAATAATATTACT GATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGC AATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCG TTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAA TTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAG ATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGA TTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAG TAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATT TGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTNNNNNNNNN N
Length of 5' end seq.	601
3' end seq. ID	AHB119Z
3' end seq.	>AHB119Z.Seq NNNNNNNNNNATAATAAAAATACCNCAGTATTTGCTCAAGATGAAAAGATATTAATAGTT AGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGA CCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAAT AAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAAT GCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTA TCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAAT ACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATAT NTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNT CCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGT TTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCC TATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAA AAATGTAAATTTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAA AATAAATAAATAAATAAATAAATG
Length of 3' end seq.	744
Connected seq. ID	AHB119P
Connected seq.	>AHB119P.Seq AAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAAAAATTATTAA AAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAATAATATTACT GATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCAATAGATGC AATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATATTCTACCCG TTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAATTATTTCAA TTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCATTCTCAAG ATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACTGTTGAGGA TTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTGAAATATAG TAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTAAGATTATT TGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGT--------- -ATAATAAAAATACCNCAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAA AGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACA ACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAA AAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTA ACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAAT GAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGT TTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTT AACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCA AACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATA GGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTT AAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAA TTTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAA ATAAATAAATAAATG
Length of connected seq.	1325
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas