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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB116
Library AH
(Link to library)
Clone ID AHB116
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14006-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AHB116 (AHB116Q) /CSM/AH/AHB1-A/AHB116Q.Seq.d/
XXXXXXXXXXANNCTTTCNNNTCCCCNAGAACAACNGCAAGATGNAANNNNTAATAATCT
TTTAGNAGAAATTAAAGAGNNAGATTGTNTAANNGAAAGNATTAATCGGCAACTNTTAGG
AAAAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LSXPXEQXQDXXXNNLLXEIKEXDCXXEXINRQLLGK
Translated Amino Acid sequence (All Frames) 
Frame A:
---xfxxpxnnxkmxxxiif*xklkxxiv*xkxlignx*en


Frame B:
---xfxsprttarxxx**sfxrn*rxrlxxxkx*satxrk


Frame C:
---LSXPXEQXQDXXXNNLLXEIKEXDCXXEXINRQLLGK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB116 (AHB116Q) /CSM/AH/AHB1-A/AHB116Q.Seq.d/                        117   4e-26
SHL467 (SHL467Q) /CSM/SH/SHL4-C/SHL467Q.Seq.d/                         60   8e-09
SHC133 (SHC133Q) /CSM/SH/SHC1-B/SHC133Q.Seq.d/                         60   8e-09
CHQ637 (CHQ637Q) /CSM/CH/CHQ6-B/CHQ637Q.Seq.d/                         60   8e-09
CHL754 (CHL754Q) /CSM/CH/CHL7-C/CHL754Q.Seq.d/                         60   8e-09
CHL191 (CHL191Q) /CSM/CH/CHL1-D/CHL191Q.Seq.d/                         60   8e-09
CHK337 (CHK337Q) /CSM/CH/CHK3-B/CHK337Q.Seq.d/                         60   8e-09
AHO274 (AHO274Q) /CSM/AH/AHO2-D/AHO274Q.Seq.d/                         60   8e-09
AHM218 (AHM218Q) /CSM/AH/AHM2-A/AHM218Q.Seq.d/                         60   8e-09
AHJ209 (AHJ209Q) /CSM/AH/AHJ2-A/AHJ209Q.Seq.d/                         60   8e-09
own update 2002. 9.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF057019|AF057019.1 Dictyostelium discoideum interaptin (abpD) gene, complete cds.    60   6e-06  1
dna update 2002. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    43   0.003
protein update 2008.11.29
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for AHB116 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AHB116Z
3' end seq. 
>AHB116Z.Seq
NNNNNNNNNNANNCTTTCNNNTCCCCNAGAACAACNGCAAGATGNAANNNNTAATAATCT
TTTAGNAGAAATTAAAGAGNNAGATTGTNTAANNGAAAGNATTAATCGGCAACTNTTAGG
AAAAT
Length of 3' end seq. 125
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -