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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK484
Library VS
(Link to library)
Clone ID VSK484
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04420-1
Original site URL
Representative seq. ID VSK484P
(Link to Original site)
Representative DNA sequence 
>VSK484 (VSK484Q) /CSM/VS/VSK4-D/VSK484Q.Seq.d/
AATATNAATAGAAATAAAAAAATAAAAAAGTNAAACAAATAAATAATNTACCAAATATAT
ATATAANTTAATNAATAAATAAATAAAATGTCANAAAGCCAAGATTTACCAGGTGCAGCT
TGNAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGCCAAAGAATCTAG
GCTAGCTATTGCAANAGCAGCANAAGTTGGGATTCATTATCTTACAGCAGCAAGTNTAGA
TTTTAGTNCACATTCTGGTAGATCTACAATATCACCAAAGGATGTATTTCAAGCAATAGA
AGAAATAGATNNTGAAAATTTTAAACCACANTTAGAGGAATATTTAGCAGCACTCAAAAG
NGAAAAAGAAAAAGAAAAGGAAANAGAGAAAGAGAAAGAAAGAGAAAAAGAAAAAGAAAA
AGATAGCAATAAGAGATGACACANAATCAAAAGATGAAAATNAATCTTCAAAAAAATCCT
CTTCCTCCTCAAAAGATGAAAAATAATNACAATTTTTATTTTATACAXXXXXXXXXXAAT
TAATAAATAAATAAAATGTCAGAAAGCCAAGATTTACCAGGTGCAATTGTAAATAGAATT
ATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGCCAAAGAATCTAGGCTAGCTATTGCA
AAAGCAGCAAAAGTTTGGATTCATTATCTTACAGCAGCAAGTATAGATTTTAGTTCACAT
TCCTGGTAGATCTACAATATCACCAAAGGATGTATTTCAAGCAATAGAAGAAATAGATTT
TGAAAATTTTAAACCACAATTAGAGGAATATTTAGCAGCACTCAAAAGTGAAAAAGAAAA
AGAAAAGGAAAAAGAGAAAGAGAAAGAAAAAGAAAAAGAAAAAGAAAAAGATAGCAATAA
AGATGACACAAAATCAAAAGATGAAAATAAATCTTCAAAAAAATCCTCTTCCTCCTCAAA
AGATGAAAAATAATAACAATTTTTATTTTATACAAAAAAAATAAAATAAAATAAAAAAAA
GAAGCTAAAAAAAAGAATAAAATAAAAAAACCAAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
nxnrnkkikkxnk*ixyqiyi*xnx*inkmsxsqdlpgaaxk*ny*sfftrrgimcqri*
asycxssxswdslsysskxrf*xtfw*iynitkgcissnrrnrx*kf*ttxrgifsstqk
xkrkrkgxrererkrkrkrkr*q*EMTXNQKMKXNLQKNPLPPQKMKNNXNFYFI---

---LINK*nvrkprftrcnck*ny*sfftrrgimcqri*asyckssksldslsysskyrf
*ftflvdlqyhqrmyfkq*kk*ilkilnhn*rni*qhskvkkkkkrkkrkrkkkkkkkkk
iaikmtqnqkmkinlqknplppqkmknnnnfyfiqkk*nkikkrs*kke*nkktk
Translated Amino Acid sequence (All Frames) 
Frame A:
nxnrnkkikkxnk*ixyqiyi*xnx*inkmsxsqdlpgaaxk*ny*sfftrrgimcqri*
asycxssxswdslsysskxrf*xtfw*iynitkgcissnrrnrx*kf*ttxrgifsstqk
xkrkrkgxrererkrkrkrkr*q*EMTXNQKMKXNLQKNPLPPQKMKNNXNFYFI---

---n**inkmsesqdlpgaivnriikaslpegvlcakesrlaiakaakvwihyltaasid
fsshsw*iynitkgcissnrrnrf*kf*ttirgifsstqk*krkrkgkrererkrkrkrk
r*q*r*hkikr*k*ifkkilfllkr*kiitifilykknkik*kkeakkknkikkp

Frame B:
ixieikk*ksxtnk*xtkyiyxlxnk*ikcxkakiyqvqlxnriikaslpegvlcakesr
laiaxaaxvgihyltaasxdfsxhsgrstispkdvfqaieeidxenfkpxleeylaalkx
ekekekexekekerekekekdsnkr*hxikr*kxifkkilfllkr*kixtifily---

---ink*ikcqkakiyqvql*iellkllyqkgyyvpknlg*llqkqqkfgfiilqqqv*i
lvhipgrstispkdvfqaieeidfenfkpqleeylaalksekekekekekekekekekek
dsnkddtkskdenksskkssssskdek**qflfytkkik*nkkkklkkrik*knq

Frame C:
yx*k*knkkvkqinnxpniyix*xink*nvxkprftrcslxiellkllyqkgyyvpknlg
*llqxqxklgfiilqqqv*ilvhilvdlqyhqrmyfkq*kk*xxkilnhx*rni*qhskx
kkkkkrkxrkrkkekkkkkkiairddtxskdenxsskkssssskdek*xqflfyt---

---LINK*nvrkprftrcnck*ny*sfftrrgimcqri*asyckssksldslsysskyrf
*ftflvdlqyhqrmyfkq*kk*ilkilnhn*rni*qhskvkkkkkrkkrkrkkkkkkkkk
iaikmtqnqkmkinlqknplppqkmknnnnfyfiqkk*nkikkrs*kke*nkktk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK484 (VSK484Q) /CSM/VS/VSK4-D/VSK484Q.Seq.d/                        674   0.0
SSA568 (SSA568Q) /CSM/SS/SSA5-C/SSA568Q.Seq.d/                        545   e-154
VFM343 (VFM343Q) /CSM/VF/VFM3-B/VFM343Q.Seq.d/                         48   3e-04
SFJ390 (SFJ390Q) /CSM/SF/SFJ3-D/SFJ390Q.Seq.d/                         48   3e-04
CFG311 (CFG311Q) /CSM/CF/CFG3-A/CFG311Q.Seq.d/                         48   3e-04
AFH706 (AFH706Q) /CSM/AF/AFH7-A/AFH706Q.Seq.d/                         48   3e-04
AFC886 (AFC886Q) /CSM/AF/AFC8-D/AFC886Q.Seq.d/                         48   3e-04
VHA322 (VHA322Q) /CSM/VH/VHA3-A/VHA322Q.Seq.d/                         42   0.017
VFL255 (VFL255Q) /CSM/VF/VFL2-C/VFL255Q.Seq.d/                         42   0.017
AHA450 (AHA450Q) /CSM/AH/AHA4-C/AHA450Q.Seq.d/                         42   0.017
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   367  e-175  10
BH985024|BH985024.1 oei69g02.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    52  0.014  1
AC016111|AC016111.2 Homo sapiens clone RP11-26N7, LOW-PASS SEQUENCE SAMPLING.    32  0.065  5
AQ273022|AQ273022.1 nbxb0029E05r CUGI Rice BAC Library Oryza sativa genomic clone nbxb0029E05r, genomic survey sequence.    36  0.076  2
AC094750|AC094750.9 Rattus norvegicus clone CH230-5H11, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.11  2
AL360229|AL360229.16 Human DNA sequence from clone RP11-313N18 on chromosome 10.    48  0.12  2
AC093823|AC093823.2 Homo sapiens chromosome 2 clone RP11-384K20, complete sequence.    42  0.16  4
AC110807|AC110807.3 Homo sapiens BAC clone RP11-745F5 from 2, complete sequence.    42  0.20  3
AC025254|AC025254.14 Homo sapiens 12 BAC RP11-1041F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48  0.22  3
AQ508225|AQ508225.1 RPCI-11-298H8.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-298H8, genomic survey sequence.    48  0.22  1
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JQ9) RecName: Full=DNA polymerase epsilon subunit 3;        ...   134   3e-37
AE014134_1577(AE014134|pid:none) Drosophila melanogaster chromos...    56   5e-08
BC059666_1(BC059666|pid:none) Danio rerio zgc:73351, mRNA (cDNA ...    60   9e-08
AK074782_1(AK074782|pid:none) Homo sapiens cDNA FLJ90301 fis, cl...    60   1e-07
BT057541_1(BT057541|pid:none) Salmo salar clone ssal-evf-556-341...    60   1e-07
(Q642A5) RecName: Full=DNA polymerase epsilon subunit 3;        ...    59   2e-07
AF261689_1(AF261689|pid:none) Homo sapiens DNA polymerase epsilo...    59   2e-07
(Q9JKP7) RecName: Full=DNA polymerase epsilon subunit 3;        ...    59   3e-07
AL732594_12(AL732594|pid:none) Mouse DNA sequence from clone RP2...    59   3e-07
AK074762_1(AK074762|pid:none) Homo sapiens cDNA FLJ90281 fis, cl...    59   4e-07
protein update 2009. 3.26
PSORT 

 psg: 0.58  gvh: 0.00  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VSK484 is nuc
5' end seq. ID VSK484F
5' end seq. 
>VSK484F.Seq
AATATNAATAGAAATAAAAAAATAAAAAAGTNAAACAAATAAATAATNTACCAAATATAT
ATATAANTTAATNAATAAATAAATAAAATGTCANAAAGCCAAGATTTACCAGGTGCAGCT
TGNAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGCCAAAGAATCTAG
GCTAGCTATTGCAANAGCAGCANAAGTTGGGATTCATTATCTTACAGCAGCAAGTNTAGA
TTTTAGTNCACATTCTGGTAGATCTACAATATCACCAAAGGATGTATTTCAAGCAATAGA
AGAAATAGATNNTGAAAATTTTAAACCACANTTAGAGGAATATTTAGCAGCACTCAAAAG
NGAAAAAGAAAAAGAAAAGGAAANAGAGAAAGAGAAAGAAAGAGAAAAAGAAAAAGAAAA
AGATAGCAATAAGAGATGACACANAATCAAAAGATGAAAATNAATCTTCAAAAAAATCCT
CTTCCTCCTCAAAAGATGAAAAATAATNACAATTTTTATTTTATACA----------
Length of 5' end seq. 527
3' end seq. ID VSK484Z
3' end seq. 
>VSK484Z.Seq
----------AATTAATAAATAAATAAAATGTCAGAAAGCCAAGATTTACCAGGTGCAAT
TGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGCCAAAGAATCTAG
GCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTTACAGCAGCAAGTATAGA
TTTTAGTTCACATTCCTGGTAGATCTACAATATCACCAAAGGATGTATTTCAAGCAATAG
AAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATATTTAGCAGCACTCAAAA
GTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAAGAAAAAGAAAAAGAAA
AAGATAGCAATAAAGATGACACAAAATCAAAAGATGAAAATAAATCTTCAAAAAAATCCT
CTTCCTCCTCAAAAGATGAAAAATAATAACAATTTTTATTTTATACAAAAAAAATAAAAT
AAAATAAAAAAAAGAAGCTAAAAAAAAGAATAAAATAAAAAAACCAAG
Length of 3' end seq. 518
Connected seq. ID VSK484P
Connected seq. 
>VSK484P.Seq
AATATNAATAGAAATAAAAAAATAAAAAAGTNAAACAAATAAATAATNTACCAAATATAT
ATATAANTTAATNAATAAATAAATAAAATGTCANAAAGCCAAGATTTACCAGGTGCAGCT
TGNAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGCCAAAGAATCTAG
GCTAGCTATTGCAANAGCAGCANAAGTTGGGATTCATTATCTTACAGCAGCAAGTNTAGA
TTTTAGTNCACATTCTGGTAGATCTACAATATCACCAAAGGATGTATTTCAAGCAATAGA
AGAAATAGATNNTGAAAATTTTAAACCACANTTAGAGGAATATTTAGCAGCACTCAAAAG
NGAAAAAGAAAAAGAAAAGGAAANAGAGAAAGAGAAAGAAAGAGAAAAAGAAAAAGAAAA
AGATAGCAATAAGAGATGACACANAATCAAAAGATGAAAATNAATCTTCAAAAAAATCCT
CTTCCTCCTCAAAAGATGAAAAATAATNACAATTTTTATTTTATACA----------AAT
TAATAAATAAATAAAATGTCAGAAAGCCAAGATTTACCAGGTGCAATTGTAAATAGAATT
ATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGCCAAAGAATCTAGGCTAGCTATTGCA
AAAGCAGCAAAAGTTTGGATTCATTATCTTACAGCAGCAAGTATAGATTTTAGTTCACAT
TCCTGGTAGATCTACAATATCACCAAAGGATGTATTTCAAGCAATAGAAGAAATAGATTT
TGAAAATTTTAAACCACAATTAGAGGAATATTTAGCAGCACTCAAAAGTGAAAAAGAAAA
AGAAAAGGAAAAAGAGAAAGAGAAAGAAAAAGAAAAAGAAAAAGAAAAAGATAGCAATAA
AGATGACACAAAATCAAAAGATGAAAATAAATCTTCAAAAAAATCCTCTTCCTCCTCAAA
AGATGAAAAATAATAACAATTTTTATTTTATACAAAAAAAATAAAATAAAATAAAAAAAA
GAAGCTAAAAAAAAGAATAAAATAAAAAAACCAAG
Length of connected seq. 1045
Full length Seq ID -
Full length Seq. -
Length of full length seq. -