>VSK476 (VSK476Q) /CSM/VS/VSK4-D/VSK476Q.Seq.d/
XXXXXXXXXXTTNAAAACTTGGNANANAACTATTAGNATTTTTTAAAAATAAGNTTAACC
CCCTATTCCAAAAACNGNCCAAAAGNCNAAAAAAAAAAAAAATAAAAATAAAAATTTAAT
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAATAAAATAAAATA
AACTTTTAACCATGATTGCAAACAAGGATAAAGTTTATATTTATGACGTTTATTCTTACT
TTGAGGATATAGATTATGATAATATTAANAATAATAANNATNATAATAANAATNAAAGTG
T

---xklgxxllxffknkxnplfqkxxkxxkkkkikiki**nkik*nkik*nkik*ik*NK
LLTMIANKDKVYIYDVYSYFEDIDYDNIXNNXXXNXNXS

Frame A:
---xklgxxllxffknkxnplfqkxxkxxkkkkikiki**nkik*nkik*nkik*ik*NK
LLTMIANKDKVYIYDVYSYFEDIDYDNIXNNXXXNXNXS


Frame B:
---xnlxxny*xflkixltpysknxpkxxkkkk*k*kfnkik*nkik*nkik*nk*nkin
f*p*lqtrikfifmtfiltlri*imiilxiixxiixxkv


Frame C:
---ktwxxtixif*k*x*ppipktxqkxkkkknknknlik*nkik*nkik*nkinkik*t
fnhdckqg*slyl*rlfll*gyrl**y*x**xx**xxkc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK476 (VSK476Q) /CSM/VS/VSK4-D/VSK476Q.Seq.d/                        200   9e-51
SSH717 (SSH717Q) /CSM/SS/SSH7-A/SSH717Q.Seq.d/                         44   0.001
VHI556 (VHI556Q) /CSM/VH/VHI5-C/VHI556Q.Seq.d/                         38   0.073
VHB832 (VHB832Q) /CSM/VH/VHB8-B/VHB832Q.Seq.d/                         38   0.073
SLD325 (SLD325Q) /CSM/SL/SLD3-B/SLD325Q.Seq.d/                         38   0.073
CHR890 (CHR890Q) /CSM/CH/CHR8-D/CHR890Q.Seq.d/                         38   0.073
CHO236 (CHO236Q) /CSM/CH/CHO2-B/CHO236Q.Seq.d/                         38   0.073
AHD260 (AHD260Q) /CSM/AH/AHD2-C/AHD260Q.Seq.d/                         38   0.073
VSA547 (VSA547Q) /CSM/VS/VSA5-B/VSA547Q.Seq.d/                         36   0.29
CFB612 (CFB612Q) /CSM/CF/CFB6-A/CFB612Q.Seq.d/                         36   0.29

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          46  0.24  1
BX470214|BX470214.6 Zebrafish DNA sequence from clone DKEY-27M7 in linkage group 18.    46  0.24  1
AL935316|AL935316.7 Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3.    46  0.24  1
BM495069|BM495069.1 IpCGBr1_4_C04_22 Ictalurus punctatus Brain1 primary library Ictalurus punctatus cDNA clone IpCGBr1_4_C04_22_07Mar00_034 3', mRNA sequence.    46  0.24  1
BI670872|BI670872.1 fp57e07.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone 4786260 3' similar to contains element MER1 repetitive element ;, mRNA sequence.    46  0.24  1
AC098910|AC098910.5 Rattus norvegicus clone CH230-150J24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.24  3
BZ978662|BZ978662.1 PUFIJ19TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa350C14, DNA sequence.    46  0.24  1
AQ526459|AQ526459.1 HS_5309_B2_H03_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=885 Col=6 Row=P, DNA sequence.    46  0.24  1
BX321888|BX321888.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.24  1
BX470266|BX470266.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEYP-9D4.    46  0.24  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 141,722,709

 psg: 0.63  gvh: 0.17  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VSK476 is nuc

>VSK476Z.Seq
----------TTNAAAACTTGGNANANAACTATTAGNATTTTTTAAAAATAAGNTTAACC
CCCTATTCCAAAAACNGNCCAAAAGNCNAAAAAAAAAAAAAATAAAAATAAAAATTTAAT
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAATAAAATAAAATA
AACTTTTAACCATGATTGCAAACAAGGATAAAGTTTATATTTATGACGTTTATTCTTACT
TTGAGGATATAGATTATGATAATATTAANAATAATAANNATNATAATAANAATNAAAGTG
T