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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK451
Library VS
(Link to library)
Clone ID VSK451
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14050-1
Original site URL
Representative seq. ID VSK451P
(Link to Original site)
Representative DNA sequence 
>VSK451 (VSK451Q) /CSM/VS/VSK4-C/VSK451Q.Seq.d/
GGTAGGTTTGTTGCATCGAAATCACATTGTACACCAGGCTGCAATTCACATAATCTAACA
GGCTTTCCATCTTGAATACCAACTTTCATTGCTTTTATTGCCATTCTAGCATATTCATCT
TGAGGTGAGAGGGGGGGTCGAGCACTTAAAAATTCTCGATACATCCAAAGATCACATTCT
TCAGGGTTGTTTTCTAAGTTATAATCAAAAATTCTGCTATCATTGTAATATTTATTTATT
ATTTCGAGATATTGTTCAAAGGTTATCCTATAAATCTCTTTCATTTTTTCTTTACATTCC
TCGGTACAGTAGCCAATATTTGGAAACTCATCTTTGTCAAATAATTCATCAAGGTAAAGA
CTGAATCCTCTTTTTTTTAATTGTTTTAACGAAAATTTATCATGCTGGCACCTATATTTA
CTTGTCATTTTTAAAATTATATGTTATAAATAAAAAAAATGAATTAAAAAAAAATGATCT
AAAAAAAAATGAXXXXXXXXXXATTTTTCTCTTTCATCTTCTTCANAGCCAGGTAGGTTT
GTTGCATCGAAATCACATTGTACACCAGGCTGCAATTCACATAATCTAACAGGCTTTCCA
TCTTGAATACCAACTTTCATTGCTTTTATTGCCATTCTAGCATATTCATCTTGAGGTGAN
AGGGGGGGTCGAGCACTTAAAAATTCTCGATACATCCAAAGATCACATTCTTCAGGGTTG
TTTTNTAAGTTATAATCAAAAATTCTGCTATCATTGTAATATTTATTTATTATTTCGAGA
TATTGTTCAAAGGTTATCCTATAAATCTCTTTCATTTTTTCTTTACATTCCTCGGTACAG
TAGCCAATATTTGGAAACTCATCTTTGTCAAATAATTCATCAAGGTAAAGACTGAATCCT
CTTTTTTTTAATTGTTTTAACGAAAATTTATCATGCTGGCACCTATATTTACTTGTCATT
TTTAAAATTATATGTTATAAATAAAAAAAATNATTAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
vgllhrnhivhqaaihii*qafhleyqlsllllpf*hihlevrggvehlkildtskdhil
qgcflsynqkfcyhcniyllfrdivqrlsykslsfflyipryssqylethlcqiihqgkd
*ILFFLIVLTKIYHAGTYIYLSFLKLYVINKKNELKKNDLKKN---

---FSLSSSSXPGRFVASKSHCTPGCNSHNLTGFPS*iptfiafiailayss*gxrggra
lknsryiqrshssglfxkl*skillsl*ylfiisrycskvil*isfifslhssvq*pifg
nsslsnnssr*rlnplffncfnenlscwhlyllvifkiicyk*kkxlkk
Translated Amino Acid sequence (All Frames) 
Frame A:
grfvaskshctpgcnshnltgfps*iptfiafiailayss*gerggralknsryiqrshs
sglfskl*skillsl*ylfiisrycskvil*isfifslhssvq*pifgnsslsnnssr*r
lnplffncfnenlscwhlyllvifkiicyk*kk*ikkk*skkk*---

---iflfhllxsqvgllhrnhivhqaaihii*qafhleyqlsllllpf*hihlevxggve
hlkildtskdhilqgcfxsynqkfcyhcniyllfrdivqrlsykslsfflyipryssqyl
ethlcqiihqgkd*ilfflivltkiyhagtyiylsflklyvinkknx*kk

Frame B:
vgllhrnhivhqaaihii*qafhleyqlsllllpf*hihlevrggvehlkildtskdhil
qgcflsynqkfcyhcniyllfrdivqrlsykslsfflyipryssqylethlcqiihqgkd
*ILFFLIVLTKIYHAGTYIYLSFLKLYVINKKNELKKNDLKKN---

---ffsfiffxar*vccieitlytrlqft*snrlsilntnfhcfychssifilr*xggss
t*kfsihpkitffrvvx*viiknsaiivifiyyfeilfkgypinlfhffftflgtvaniw
klifvk*fikvktessff*lf*rkfimlapiftchf*nyml*ikkxikk

Frame C:
*vccieitlytrlqft*snrlsilntnfhcfychssifilr*eggsst*kfsihpkitff
rvvf*viiknsaiivifiyyfeilfkgypinlfhffftflgtvaniwklifvk*fikvkt
essff*lf*rkfimlapiftchf*nyml*ikkmn*kkmi*kkm---

---FSLSSSSXPGRFVASKSHCTPGCNSHNLTGFPS*iptfiafiailayss*gxrggra
lknsryiqrshssglfxkl*skillsl*ylfiisrycskvil*isfifslhssvq*pifg
nsslsnnssr*rlnplffncfnenlscwhlyllvifkiicyk*kkxlkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK451 (VSK451Q) /CSM/VS/VSK4-C/VSK451Q.Seq.d/                        835   0.0
AHK644 (AHK644Q) /CSM/AH/AHK6-B/AHK644Q.Seq.d/                        827   0.0
AHF269 (AHF269Q) /CSM/AH/AHF2-C/AHF269Q.Seq.d/                        795   0.0
SSC783 (SSC783Q) /CSM/SS/SSC7-D/SSC783Q.Seq.d/                        234   2e-60
SHI168 (SHI168Q) /CSM/SH/SHI1-C/SHI168Q.Seq.d/                         40   0.064
SHH495 (SHH495Q) /CSM/SH/SHH4-D/SHH495Q.Seq.d/                         40   0.064
SHF882 (SHF882Q) /CSM/SH/SHF8-D/SHF882Q.Seq.d/                         40   0.064
FC-BM03 (FC-BM03Q) /CSM/FC/FC-BM/FC-BM03Q.Seq.d/                       40   0.064
CHS385 (CHS385Q) /CSM/CH/CHS3-D/CHS385Q.Seq.d/                         40   0.064
CHO786 (CHO786Q) /CSM/CH/CHO7-D/CHO786Q.Seq.d/                         40   0.064
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***.   202  4e-87  9
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   202  3e-83  11
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          38  0.002  10
AC127773|AC127773.3 Rattus norvegicus clone CH230-92I3, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.050  8
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34  0.074  9
BX005359|BX005359.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-142I8.    40  0.076  3
AL591867|AL591867.13 Human DNA sequence from clone RP11-133N6 on chromosome 9.    34  0.081  7
BX005058|BX005058.3 Zebrafish DNA sequence from clone CH211-112K3 in linkage group 17.    34  0.10  9
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  0.11  7
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    42  0.15  7
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromoso...   246   8e-64
EU371793_1(EU371793|pid:none) Cleome domingensis voucher DNA 2/1...    39   0.27
EU371802_1(EU371802|pid:none) Cleome rosea voucher ex. Rio bot. ...    39   0.27
EU371790_1(EU371790|pid:none) Cleome aculeata voucher WIS:H.H. I...    39   0.27
EU371796_1(EU371796|pid:none) Cleome lechleri voucher WIS:J.S. S...    39   0.27
EU371815_1(EU371815|pid:none) Podandrogyne decipiens voucher WIS...    38   0.46
EU371816_1(EU371816|pid:none) Podandrogyne mathewsii voucher K:J...    38   0.46
AL360354_29(AL360354|pid:none) Plasmodium vivax telomeric YAC cl...    37   0.78
EU371805_1(EU371805|pid:none) Cleome spinosa voucher WIS:G. Ayal...    37   0.78
EU371794_1(EU371794|pid:none) Cleome droserifolia voucher WIS:A....    36   1.7
protein update 2009. 3.26
PSORT 

 psg: 0.89  gvh: 0.47  alm: 0.37  top: 0.63  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSK451 is cyt
5' end seq. ID VSK451F
5' end seq. 
>VSK451F.Seq
GGTAGGTTTGTTGCATCGAAATCACATTGTACACCAGGCTGCAATTCACATAATCTAACA
GGCTTTCCATCTTGAATACCAACTTTCATTGCTTTTATTGCCATTCTAGCATATTCATCT
TGAGGTGAGAGGGGGGGTCGAGCACTTAAAAATTCTCGATACATCCAAAGATCACATTCT
TCAGGGTTGTTTTCTAAGTTATAATCAAAAATTCTGCTATCATTGTAATATTTATTTATT
ATTTCGAGATATTGTTCAAAGGTTATCCTATAAATCTCTTTCATTTTTTCTTTACATTCC
TCGGTACAGTAGCCAATATTTGGAAACTCATCTTTGTCAAATAATTCATCAAGGTAAAGA
CTGAATCCTCTTTTTTTTAATTGTTTTAACGAAAATTTATCATGCTGGCACCTATATTTA
CTTGTCATTTTTAAAATTATATGTTATAAATAAAAAAAATGAATTAAAAAAAAATGATCT
AAAAAAAAATGA----------
Length of 5' end seq. 492
3' end seq. ID VSK451Z
3' end seq. 
>VSK451Z.Seq
----------ATTTTTCTCTTTCATCTTCTTCANAGCCAGGTAGGTTTGTTGCATCGAAA
TCACATTGTACACCAGGCTGCAATTCACATAATCTAACAGGCTTTCCATCTTGAATACCA
ACTTTCATTGCTTTTATTGCCATTCTAGCATATTCATCTTGAGGTGANAGGGGGGGTCGA
GCACTTAAAAATTCTCGATACATCCAAAGATCACATTCTTCAGGGTTGTTTTNTAAGTTA
TAATCAAAAATTCTGCTATCATTGTAATATTTATTTATTATTTCGAGATATTGTTCAAAG
GTTATCCTATAAATCTCTTTCATTTTTTCTTTACATTCCTCGGTACAGTAGCCAATATTT
GGAAACTCATCTTTGTCAAATAATTCATCAAGGTAAAGACTGAATCCTCTTTTTTTTAAT
TGTTTTAACGAAAATTTATCATGCTGGCACCTATATTTACTTGTCATTTTTAAAATTATA
TGTTATAAATAAAAAAAATNATTAAAAAAAA
Length of 3' end seq. 501
Connected seq. ID VSK451P
Connected seq. 
>VSK451P.Seq
GGTAGGTTTGTTGCATCGAAATCACATTGTACACCAGGCTGCAATTCACATAATCTAACA
GGCTTTCCATCTTGAATACCAACTTTCATTGCTTTTATTGCCATTCTAGCATATTCATCT
TGAGGTGAGAGGGGGGGTCGAGCACTTAAAAATTCTCGATACATCCAAAGATCACATTCT
TCAGGGTTGTTTTCTAAGTTATAATCAAAAATTCTGCTATCATTGTAATATTTATTTATT
ATTTCGAGATATTGTTCAAAGGTTATCCTATAAATCTCTTTCATTTTTTCTTTACATTCC
TCGGTACAGTAGCCAATATTTGGAAACTCATCTTTGTCAAATAATTCATCAAGGTAAAGA
CTGAATCCTCTTTTTTTTAATTGTTTTAACGAAAATTTATCATGCTGGCACCTATATTTA
CTTGTCATTTTTAAAATTATATGTTATAAATAAAAAAAATGAATTAAAAAAAAATGATCT
AAAAAAAAATGA----------ATTTTTCTCTTTCATCTTCTTCANAGCCAGGTAGGTTT
GTTGCATCGAAATCACATTGTACACCAGGCTGCAATTCACATAATCTAACAGGCTTTCCA
TCTTGAATACCAACTTTCATTGCTTTTATTGCCATTCTAGCATATTCATCTTGAGGTGAN
AGGGGGGGTCGAGCACTTAAAAATTCTCGATACATCCAAAGATCACATTCTTCAGGGTTG
TTTTNTAAGTTATAATCAAAAATTCTGCTATCATTGTAATATTTATTTATTATTTCGAGA
TATTGTTCAAAGGTTATCCTATAAATCTCTTTCATTTTTTCTTTACATTCCTCGGTACAG
TAGCCAATATTTGGAAACTCATCTTTGTCAAATAATTCATCAAGGTAAAGACTGAATCCT
CTTTTTTTTAATTGTTTTAACGAAAATTTATCATGCTGGCACCTATATTTACTTGTCATT
TTTAAAATTATATGTTATAAATAAAAAAAATNATTAAAAAAAA
Length of connected seq. 993
Full length Seq ID -
Full length Seq. -
Length of full length seq. -