VSK449
Library VS
(Link to library)
Clone ID VSK449
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11149-1
Original site URL
Representative seq. ID VSK449P
(Link to Original site)
Representative DNA sequence
>VSK449 (VSK449Q) /CSM/VS/VSK4-C/VSK449Q.Seq.d/
CAAATAGTAACGGCCCAAACAAGATGAAAGCACTTGTTGCCCCATCGAATTCATCTACCA
CATCCAAAACAAATAACAACAATTTACCCCCAAATGGAAGATCAATTTTTGGTCCATAAA
ACAGTATAGTGAAACCGGATTACCTATTTACATTTAATAAATAAAGATGTAAATCAAAAT
GTAAAATTAAATTTATATAAAAAAAAAAXXXXXXXXXXCAAATAGTAACGGCCCAAACAA
GATGAAAGCACTTGTTGCCCCATCGAATTCATCTACCACATCCAAAACAAATAACAACAA
TTTACCCCCAAATGGAAGATCAATTTTTGGTCCATAAAACAGTATAGTGAAACCGGATTA
CCTATTTACATTTAATAAATAAAGATGTAANCAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
qivtaqtr*khllphrihlphpkqittiypqmedqflvhktv**NRITYLHLINKDVNQN
VKLNLYKKK---

---NSNGPNKMKALVAPSNSSTTSKTNNNNLPPNGRSIFGP*nsivkpdylftfnk*rcx
qn


Translated Amino Acid sequence (All Frames)
Frame A:
qivtaqtr*khllphrihlphpkqittiypqmedqflvhktv**NRITYLHLINKDVNQN
VKLNLYKKK---

---qivtaqtr*khllphrihlphpkqittiypqmedqflvhktv**nritylhlinkdv
xk

Frame B:
k**rpkqdestccpiefiyhiqnk*qqftpkwkinfwsikqysetglpiyi**ikm*ikm
*n*iyikkk---

---k**rpkqdestccpiefiyhiqnk*qqftpkwkinfwsikqysetglpiyi**ikm*
xk

Frame C:
nsngpnkmkalvapsnssttsktnnnnlppngrsifgp*nsivkpdylftfnk*rckskc
kikfi*kk---

---NSNGPNKMKALVAPSNSSTTSKTNNNNLPPNGRSIFGP*nsivkpdylftfnk*rcx
qn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK449 (VSK449Q) /CSM/VS/VSK4-C/VSK449Q.Seq.d/ 392 e-108
VFG482 (VFG482Q) /CSM/VF/VFG4-D/VFG482Q.Seq.d/ 367 e-101
SSG347 (SSG347Q) /CSM/SS/SSG3-B/SSG347Q.Seq.d/ 40 0.025
SSC306 (SSC306Q) /CSM/SS/SSC3-A/SSC306Q.Seq.d/ 40 0.025
SSB738 (SSB738Q) /CSM/SS/SSB7-B/SSB738Q.Seq.d/ 40 0.025
VHQ239 (VHQ239Q) /CSM/VH/VHQ2-B/VHQ239Q.Seq.d/ 38 0.097
VHL452 (VHL452Q) /CSM/VH/VHL4-C/VHL452Q.Seq.d/ 38 0.097
VSJ373 (VSJ373Q) /CSM/VS/VSJ3-D/VSJ373Q.Seq.d/ 36 0.38
VSH723 (VSH723Q) /CSM/VS/VSH7-A/VSH723Q.Seq.d/ 36 0.38
VHO595 (VHO595Q) /CSM/VH/VHO5-D/VHO595Q.Seq.d/ 34 1.5

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC127172|AC127172.13 Mus musculus clone rp23-387d2 map 17 strain C57BL/6J, complete sequence. 42 0.001 3
AC094611|AC094611.5 Rattus norvegicus clone CH230-5A8, WORKING DRAFT SEQUENCE, 1 ordered piece. 36 0.005 6
AC132562|AC132562.4 Rattus norvegicus clone CH230-5B7, WORKING DRAFT SEQUENCE, 1 ordered piece. 36 0.005 6
AC094815|AC094815.4 Rattus norvegicus clone CH230-5J3, WORKING DRAFT SEQUENCE, 1 ordered piece. 36 0.005 6
AL929264|AL929264.4 Zebrafish DNA sequence from clone CH211-59C24 in linkage group 18. 42 0.26 7
BM415731|BM415731.1 OP20812 Mixed Stage EST's from Globodera pallida, the potato cyst nematode Globodera pallida cDNA similar to Homology:(blast score <=3D 1e-5) Toxocara canis ribosomal protein L3 mRNA, mRNA sequence. 34 0.32 2
BX000486|BX000486.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-149M16. 34 0.32 8
BM415743|BM415743.1 OP20824 Mixed Stage EST's from Globodera pallida, the potato cyst nematode Globodera pallida cDNA similar to Homology:(blast score <=3D 1e-5) Toxocara canis ribosomal protein L3 mRNA, mRNA sequence. 34 0.32 2
AL807238|AL807238.5 Mouse DNA sequence from clone RP23-476F6 on chromosome 4. 34 0.32 6
AX251188|AX251188.1 Sequence 156 from Patent WO0168912. 34 0.44 3
dna update 2003. 7.29
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 548,316,939
protein update 2009. 3.26
PSORT

psg: 0.51 gvh: 0.43 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.44 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for VSK449 is mit

5' end seq. ID VSK449F
5' end seq.
>VSK449F.Seq
CAAATAGTAACGGCCCAAACAAGATGAAAGCACTTGTTGCCCCATCGAATTCATCTACCA
CATCCAAAACAAATAACAACAATTTACCCCCAAATGGAAGATCAATTTTTGGTCCATAAA
ACAGTATAGTGAAACCGGATTACCTATTTACATTTAATAAATAAAGATGTAAATCAAAAT
GTAAAATTAAATTTATATAAAAAAAAAA----------
Length of 5' end seq. 208
3' end seq. ID VSK449Z
3' end seq.
>VSK449Z.Seq
----------CAAATAGTAACGGCCCAAACAAGATGAAAGCACTTGTTGCCCCATCGAAT
TCATCTACCACATCCAAAACAAATAACAACAATTTACCCCCAAATGGAAGATCAATTTTT
GGTCCATAAAACAGTATAGTGAAACCGGATTACCTATTTACATTTAATAAATAAAGATGT
AANCAAAAT
Length of 3' end seq. 179
Connected seq. ID VSK449P
Connected seq.
>VSK449P.Seq
CAAATAGTAACGGCCCAAACAAGATGAAAGCACTTGTTGCCCCATCGAATTCATCTACCA
CATCCAAAACAAATAACAACAATTTACCCCCAAATGGAAGATCAATTTTTGGTCCATAAA
ACAGTATAGTGAAACCGGATTACCTATTTACATTTAATAAATAAAGATGTAAATCAAAAT
GTAAAATTAAATTTATATAAAAAAAAAA----------CAAATAGTAACGGCCCAAACAA
GATGAAAGCACTTGTTGCCCCATCGAATTCATCTACCACATCCAAAACAAATAACAACAA
TTTACCCCCAAATGGAAGATCAATTTTTGGTCCATAAAACAGTATAGTGAAACCGGATTA
CCTATTTACATTTAATAAATAAAGATGTAANCAAAAT
Length of connected seq. 387
Full length Seq ID -
Full length Seq. -
Length of full length seq. -