NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK445
Library VS
(Link to library)
Clone ID VSK445
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSK445P
(Link to Original site)
Representative DNA sequence 
>VSK445 (VSK445Q) /CSM/VS/VSK4-B/VSK445Q.Seq.d/
AAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAG
AAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGG
TAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGT
TTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTAT
CAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGA
CCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTATTACAGTTTAAAA
AAAAAAXXXXXXXXXXAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGA
TATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTAC
ACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGT
AACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCC
ACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGA
AATAAAATAAATCAGGACCAATATACACGGTTTTAAAAAATAAATATATTTAAAATAC
sequence update 2001. 3.22
Translated Amino Acid sequence 
eqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtvavkf
*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*KINIFKILVLQFKK
K---

---RTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGC
RKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytrf*kinifki
Translated Amino Acid sequence (All Frames) 
Frame A:
knkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rlp*s
fswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*iylkylyyslk
kk---

---keqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtv
avkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihgfkk*iylky

Frame B:
rtkkvgvvgkygtrygaslrkqvkkmeitqhgtytcsfcgkdavrrssvgiwkcngcrkv
laggawtmstaagatvrstirrlrelnn*tiyi*nkinqdqytlvlknkyi*ntcitv*k
k---

---knkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rl
p*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytvlknkyi*n

Frame C:
eqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtvavkf
*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*KINIFKILVLQFKK
K---

---RTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGC
RKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytrf*kinifki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK445 (VSK445Q) /CSM/VS/VSK4-B/VSK445Q.Seq.d/                        706   0.0
VSK444 (VSK444Q) /CSM/VS/VSK4-B/VSK444Q.Seq.d/                        706   0.0
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/                        706   0.0
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        698   0.0
VFB352 (VFB352Q) /CSM/VF/VFB3-C/VFB352Q.Seq.d/                        698   0.0
SSE820 (SSE820Q) /CSM/SS/SSE8-A/SSE820Q.Seq.d/                        694   0.0
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        676   0.0
VSB771 (VSB771Q) /CSM/VS/VSB7-C/VSB771Q.Seq.d/                        676   0.0
VHA808 (VHA808Q) /CSM/VH/VHA8-A/VHA808Q.Seq.d/                        676   0.0
SSH726 (SSH726Q) /CSM/SS/SSH7-B/SSH726Q.Seq.d/                        676   0.0
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    80  4e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  9e-13  2
BU275473|BU275473.1 Cr_Emb_02A04_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_02A04 5' similar to E1266102 SEQUENCE 47 FROM PATENT WO9723633. unidentified, mRNA sequence.    68  1e-10  2
BI742435|BI742435.1 kt50h12.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;contains element MER8 repetitive element ;, mRNA sequence.    42  3e-10  4
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   179   9e-44
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   143   4e-33
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   142   8e-33
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   142   8e-33
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   142   1e-32
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   141   2e-32
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   140   3e-32
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   140   4e-32
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   140   5e-32
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   140   5e-32
protein update 2009. 3.26
PSORT 

 psg: 0.69  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VSK445 is nuc
5' end seq. ID VSK445F
5' end seq. 
>VSK445F.Seq
AAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAG
AAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGG
TAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGT
TTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTAT
CAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGA
CCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTATTACAGTTTAAAA
AAAAAA----------
Length of 5' end seq. 366
3' end seq. ID VSK445Z
3' end seq. 
>VSK445Z.Seq
----------AAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGT
GCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGT
TCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGT
TGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTT
AGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAA
ATAAATCAGGACCAATATACACGGTTTTAAAAAATAAATATATTTAAAATAC
Length of 3' end seq. 342
Connected seq. ID VSK445P
Connected seq. 
>VSK445P.Seq
AAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAG
AAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGG
TAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGT
TTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTAT
CAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGA
CCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATACTTGTATTACAGTTTAAAA
AAAAAA----------AAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGA
TATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTAC
ACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGT
AACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCC
ACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGA
AATAAAATAAATCAGGACCAATATACACGGTTTTAAAAAATAAATATATTTAAAATAC
Length of connected seq. 708
Full length Seq ID -
Full length Seq. -
Length of full length seq. -