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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK419
Library VS
(Link to library)
Clone ID VSK419
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14702-1
Original site URL
Representative seq. ID VSK419P
(Link to Original site)
Representative DNA sequence 
>VSK419 (VSK419Q) /CSM/VS/VSK4-A/VSK419Q.Seq.d/
AAAAAAAAAAGAAAAGAAAATGACAACATTAGTTTATGCATATGCAATTTTACTTGCAAT
TGGTGGGTTGATTGGTTACTTAAAAGCAAATTCAATGCCATCTCTTATCATGGGTTTACT
TAGTGGTTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAAAGAATGGTNC
ACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGAATGAGATTTGTAAA
TTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGTCTTTAGTGCAATAATATTAGTAAA
GTCTTTTTTATCACTTTCCCAAATGTAATTGAATTCAATCATACTCCAAAAAAAAAAXXX
XXXXXXXAAAAAAAAAAGAAAAGAAAATGACAACATTAGTTTATGCATATGCAATTTTAC
TTGCAATTGGTGGGTTGATTGGTTACTTAAAAGCAAATTCAATGCCATCTCTTATCATGG
GTTTACTTAGTGGTTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAAAGA
ATGGTACACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGAATGAGAT
TTGTAAATTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGTCTTTAGTGCAATAATAT
TAGTAAAGTCTTTTTATCACTTCCCAAATGTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
kkkrkendnislcicnftcnwwvdwllkskfnaisyhgft*wfiswl*c*pyyhq*kewx
tinngiiigtfnyngneickfw*ifpcwfsicl*CNNISKVFFITFPNVIEFNHTPKKK-
--

---KKKEKKMTTLVYAYAILLAIGGLIGYLKANSMPSLIMGLLSGLLVGYSANLTTTNKK
NGTQLTMALSLVLLIIMGMRFVNSGKFFPAGLVSVFSAIILVKSFYHFPNV
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkrkendnislcicnftcnwwvdwllkskfnaisyhgft*wfiswl*c*pyyhq*kewx
tinngiiigtfnyngneickfw*ifpcwfsicl*CNNISKVFFITFPNVIEFNHTPKKK-
--

---kkkrkendnislcicnftcnwwvdwllkskfnaisyhgft*wfiswl*c*pyyhq*k
ewytinngiiigtfnyngneickfw*ifpcwfsicl*cnniskvflslpkc

Frame B:
kkkekkmttlvyayaillaiggligylkansmpslimgllsgllvgysanltttnkkngx
qltmalslvlliimgmrfvnsgkffpaglvsvfsaiilvksflslsqm*lnsiilqkk--
-

---KKKEKKMTTLVYAYAILLAIGGLIGYLKANSMPSLIMGLLSGLLVGYSANLTTTNKK
NGTQLTMALSLVLLIIMGMRFVNSGKFFPAGLVSVFSAIILVKSFYHFPNV

Frame C:
kkkkrk*qh*fmhmqfylqlvg*lvt*kqiqchllswvylvvy*lvivltllppikrmvh
n*qwhyhwyf*l*we*dl*ilvnfsllv*ylslvq*y**slfyhfpkcn*iqsyskkk--
-

---kkkkrk*qh*fmhmqfylqlvg*lvt*kqiqchllswvylvvy*lvivltllppikr
mvhn*qwhyhwyf*l*we*dl*ilvnfsllv*ylslvq*y**slfitsqm
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK419 (VSK419Q) /CSM/VS/VSK4-A/VSK419Q.Seq.d/                        662   0.0
VHA730 (VHA730Q) /CSM/VH/VHA7-B/VHA730Q.Seq.d/                        662   0.0
SSH438 (SSH438Q) /CSM/SS/SSH4-B/SSH438Q.Seq.d/                        662   0.0
VSJ283 (VSJ283Q) /CSM/VS/VSJ2-D/VSJ283Q.Seq.d/                        650   0.0
SSA701 (SSA701Q) /CSM/SS/SSA7-A/SSA701Q.Seq.d/                        319   3e-86
VFE730 (VFE730Q) /CSM/VF/VFE7-B/VFE730Q.Seq.d/                         36   0.68
VFD707 (VFD707Q) /CSM/VF/VFD7-A/VFD707Q.Seq.d/                         36   0.68
AHB841 (AHB841Q) /CSM/AH/AHB8-B/AHB841Q.Seq.d/                         36   0.68
AHA541 (AHA541Q) /CSM/AH/AHA5-B/AHA541Q.Seq.d/                         36   0.68
SLI256 (SLI256Q) /CSM/SL/SLI2-C/SLI256Q.Seq.d/                         34   2.7
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC094527|AC094527.7 Rattus norvegicus 5 BAC CH230-4L11 (Children's Hospital Oakland Research Institute) complete sequence.    46  0.013  3
AC094487|AC094487.6 Rattus norvegicus clone CH230-4B23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.015  3
AL978439|AL978439.1 Danio rerio genomic clone DKEY-26P20, genomic survey sequence.    28  0.37  4
AL983305|AL983305.1 Danio rerio genomic clone DKEY-33M2, genomic survey sequence.    28  0.53  4
BX177318|BX177318.1 Danio rerio genomic clone DKEY-179D17, genomic survey sequence.    28  1.1  4
AC026084|AC026084.4 Homo sapiens chromosome X clone RP11-477A22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44  1.5  3
BZ854203|BZ854203.1 CH240_281J10.TJ CHORI-240 Bos taurus genomic clone CH240_281J10, DNA sequence.    34  1.6  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38  1.8  5
AL845481|AL845481.5 Zebrafish DNA sequence from clone DKEY-46N18 in linkage group 17.    36  2.1  6
X15345|X15345.1 Hamster H-19 proviral DNA (LTR- v-src -LTR).      34  2.2  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK008495_1(AK008495|pid:none) Mus musculus adult male small inte...    57   7e-07
(Q9CQN6) RecName: Full=Transmembrane protein 14C;  &AK003891_1(A...    57   7e-07
AK223462_1(AK223462|pid:none) Homo sapiens mRNA for transmembran...    56   1e-06
(Q9W1K0) RecName: Full=UPF0136 membrane protein CG5532;  &AE0135...    54   6e-06
(Q5R751) RecName: Full=Transmembrane protein 14C;  &CR860267_1(C...    54   6e-06
(Q924P2) RecName: Full=Transmembrane protein 14C; AltName: Full=...    54   6e-06
BC122294_1(BC122294|pid:none) Danio rerio zgc:153439, mRNA (cDNA...    53   9e-06
CP000806_435(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    53   9e-06
(Q9Y6G1) RecName: Full=Transmembrane protein 14A;  &AF078864_1(A...    51   3e-05
(P56983) RecName: Full=Transmembrane protein 14A;  &BC034768_1(B...    51   4e-05
protein update 2009. 3.26
PSORT 

 psg: 0.89  gvh: 0.52  alm: 0.27  top: 0.17  tms: 0.27  mit: 0.34  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VSK419 is mit
5' end seq. ID VSK419F
5' end seq. 
>VSK419F.Seq
AAAAAAAAAAGAAAAGAAAATGACAACATTAGTTTATGCATATGCAATTTTACTTGCAAT
TGGTGGGTTGATTGGTTACTTAAAAGCAAATTCAATGCCATCTCTTATCATGGGTTTACT
TAGTGGTTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAAAGAATGGTNC
ACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGAATGAGATTTGTAAA
TTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGTCTTTAGTGCAATAATATTAGTAAA
GTCTTTTTTATCACTTTCCCAAATGTAATTGAATTCAATCATACTCCAAAAAAAAAA---
-------
Length of 5' end seq. 357
3' end seq. ID VSK419Z
3' end seq. 
>VSK419Z.Seq
----------AAAAAAAAAAGAAAAGAAAATGACAACATTAGTTTATGCATATGCAATTT
TACTTGCAATTGGTGGGTTGATTGGTTACTTAAAAGCAAATTCAATGCCATCTCTTATCA
TGGGTTTACTTAGTGGTTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAA
AGAATGGTACACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGAATGA
GATTTGTAAATTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGTCTTTAGTGCAATAA
TATTAGTAAAGTCTTTTTATCACTTCCCAAATGTA
Length of 3' end seq. 325
Connected seq. ID VSK419P
Connected seq. 
>VSK419P.Seq
AAAAAAAAAAGAAAAGAAAATGACAACATTAGTTTATGCATATGCAATTTTACTTGCAAT
TGGTGGGTTGATTGGTTACTTAAAAGCAAATTCAATGCCATCTCTTATCATGGGTTTACT
TAGTGGTTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAAAGAATGGTNC
ACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGAATGAGATTTGTAAA
TTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGTCTTTAGTGCAATAATATTAGTAAA
GTCTTTTTTATCACTTTCCCAAATGTAATTGAATTCAATCATACTCCAAAAAAAAAA---
-------AAAAAAAAAAGAAAAGAAAATGACAACATTAGTTTATGCATATGCAATTTTAC
TTGCAATTGGTGGGTTGATTGGTTACTTAAAAGCAAATTCAATGCCATCTCTTATCATGG
GTTTACTTAGTGGTTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAAAGA
ATGGTACACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGAATGAGAT
TTGTAAATTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGTCTTTAGTGCAATAATAT
TAGTAAAGTCTTTTTATCACTTCCCAAATGTA
Length of connected seq. 682
Full length Seq ID -
Full length Seq. -
Length of full length seq. -