>VSK384 (VSK384Q) /CSM/VS/VSK3-D/VSK384Q.Seq.d/
GTCAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAA
ACCGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAA
ACTAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTC
GGTGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTA
CAAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTC
ACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGA
CCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCC
ACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACXXXXXXXXXXTG
TCNCCAAATTAATCGAAAAGAANAAAGCTAAATTAGTNGTCATTGCCCNCGATGTTGACC
CAGTTGAACTNGTTTTANACTTACCAACCCTNTGCANANGTATGGATGTCCCANACTGNA
TCGTCAAATNTAAATCCANATTAGGTGAATTAGTTCACATNANAAACGCTTCATGTGTTG
CCCNCACTGGNGNCAACTCTGCTGACTCAAACGAACNCGCTTTATTAGTTGAANCCGCCA
AACAAATGTTCAACAANAACAGTGAACNCANAAAGACCTGGGGTGGNAACNCTTTATCTG
GTCCAGCTCGNGCTATNTTAGCCNAACGNCAAAAAGCTGAAGCCAAANAAAGTTTAGCCN
AATCAAAGATCTAAGCNCTTTAA

VRMSQKQTKPAAATKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGF
GVQPKRDLTHFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYR
PEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQH---

---VXKLIEKXKAKLVVIAXDVDPVELVLXLPTLCXXMDVPXXIVKXKSXLGELVHXXNA
SCVAXTGXNSADSNEXALLVEXAKQMFNXNSEXXKTWGGNXLSGPARAXLAXRQKAEAKX
SLAXSKI*al*

Frame A:
VRMSQKQTKPAAATKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGF
GVQPKRDLTHFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYR
PEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQH---

---cxqinrkexs*isxhcprc*ps*txfxltnpxxxygcpxlxrqx*ixir*isshxkr
fmccphwxqlc*lkrtrfis*xrqtnvqqxq*txkdlgwxxfiwsssxyxsxtxks*sqx
kfsxikdlsxl

Frame B:
seclknklnqllppkllqpkpllpppnqrkssrrvkrksklepystpytpktsktlvlvs
vfnqrei*lisltgqdtsnykdkdvfy*rd*rfhqqstnspvsltktplsiysny*intd
qkkpqsrkldy*kslkpvlplqkvkllqklknqsn---

---VXKLIEKXKAKLVVIAXDVDPVELVLXLPTLCXXMDVPXXIVKXKSXLGELVHXXNA
SCVAXTGXNSADSNEXALLVEXAKQMFNXNSEXXKTWGGNXLSGPARAXLAXRQKAEAKX
SLAXSKI*al*

Frame C:
qnvsktn*tscchqscssqnrcchhqikesrqeg*kenqn*nliqrlihqkrqklwywfr
cstkerfnsfhslakihqitktktcfikeikgstnnqpihpcl*qkhrcpfiqiir*iqt
rrslsqes*iienr*spcchskrsscsks*ktspt---

---spn*skrxkln*xslpxmltqlnxfxtyqpxaxvwmsxtxssnxnpx*vn*ftxxtl
hvlpxlxxtlltqtnxly*lxppnkcstxtvnxxrpgvxtlylvqlxlx*pnxkklkpxk
v*pnqrskxf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK384 (VSK384Q) /CSM/VS/VSK3-D/VSK384Q.Seq.d/                       1461   0.0
VSK343 (VSK343Q) /CSM/VS/VSK3-B/VSK343Q.Seq.d/                        920   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                        914   0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/                        904   0.0
VSD850 (VSD850Q) /CSM/VS/VSD8-C/VSD850Q.Seq.d/                        904   0.0
VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/                        886   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                        856   0.0
VSH242 (VSH242Q) /CSM/VS/VSH2-B/VSH242Q.Seq.d/                        676   0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/                      632   e-180
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                         632   e-180

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   912  0.0  3
BI742187|BI742187.1 kt91d02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:H11_CAEEL P10771 HISTONE H1.1. [2] TR:Q93901 ;, mRNA sequence.    48  0.18  1
BM879489|BM879489.1 kt96b07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:H11_CAEEL P10771 HISTONE H1.1. [2] TR:Q93901 ;, mRNA sequence.    48  0.18  1
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    36  0.21  2
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    36  0.22  2
AL409408|AL409408.1 T7 end of clone AV0AA014G06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    42  0.32  2
BF779702|BF779702.1 3232-81 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3232-81, mRNA sequence.    40  0.60  2
BM059302|BM059302.1 2243-04 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 2243-04, mRNA sequence.    40  0.63  2
BF779703|BF779703.1 3232-82 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3232-82, mRNA sequence.    40  0.63  2
CB932591|CB932591.1 ri91f07.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  0.72  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     199   1e-85
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...    97   9e-35
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...    96   6e-34
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...    99   4e-33
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...    97   4e-33
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...    94   1e-32
X82782_1(X82782|pid:none) D.melanogaster rpL7a gene.                  102   4e-32
BC059533_1(BC059533|pid:none) Danio rerio ribosomal protein L7a,...    96   4e-32
(P46223) RecName: Full=60S ribosomal protein L7a;  &AE014298_931...   102   5e-32
(O57592) RecName: Full=60S ribosomal protein L7a; AltName: Full=...    98   5e-32

 psg: 0.76  gvh: 0.33  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.17
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 40.0 %: cytoplasmic
	 12.0 %: nuclear

>> prediction for VSK384 is mit

>VSK384F.Seq
GTCAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAA
ACCGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAA
ACTAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTC
GGTGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTA
CAAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTC
ACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGA
CCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCC
ACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACAC----------

>VSK384Z.Seq
----------TGTCNCCAAATTAATCGAAAAGAANAAAGCTAAATTAGTNGTCATTGCCC
NCGATGTTGACCCAGTTGAACTNGTTTTANACTTACCAACCCTNTGCANANGTATGGATG
TCCCANACTGNATCGTCAAATNTAAATCCANATTAGGTGAATTAGTTCACATNANAAACG
CTTCATGTGTTGCCCNCACTGGNGNCAACTCTGCTGACTCAAACGAACNCGCTTTATTAG
TTGAANCCGCCAAACAAATGTTCAACAANAACAGTGAACNCANAAAGACCTGGGGTGGNA
ACNCTTTATCTGGTCCAGCTCGNGCTATNTTAGCCNAACGNCAAAAAGCTGAAGCCAAAN
AAAGTTTAGCCNAATCAAAGATCTAAGCNCTTTAA

>VSK384P.Seq
GTCAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAA
ACCGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAA
ACTAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTC
GGTGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTA
CAAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTC
ACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGA
CCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCC
ACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACAC----------TG
TCNCCAAATTAATCGAAAAGAANAAAGCTAAATTAGTNGTCATTGCCCNCGATGTTGACC
CAGTTGAACTNGTTTTANACTTACCAACCCTNTGCANANGTATGGATGTCCCANACTGNA
TCGTCAAATNTAAATCCANATTAGGTGAATTAGTTCACATNANAAACGCTTCATGTGTTG
CCCNCACTGGNGNCAACTCTGCTGACTCAAACGAACNCGCTTTATTAGTTGAANCCGCCA
AACAAATGTTCAACAANAACAGTGAACNCANAAAGACCTGGGGTGGNAACNCTTTATCTG
GTCCAGCTCGNGCTATNTTAGCCNAACGNCAAAAAGCTGAAGCCAAANAAAGTTTAGCCN
AATCAAAGATCTAAGCNCTTTAA