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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK373
Library VS
(Link to library)
Clone ID VSK373
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13926-1
Original site URL
Representative seq. ID VSK373P
(Link to Original site)
Representative DNA sequence 
>VSK373 (VSK373Q) /CSM/VS/VSK3-D/VSK373Q.Seq.d/
AATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCATCTTTC
ACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATGTAGTA
TTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATCAGGTATTCTC
GATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTACACTT
ATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCT
GGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGTAAATAC
ACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGATGTTGAT
ATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGATAAAAA
AAAAAXXXXXXXXXXAATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTA
GTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAA
ATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGT
GCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATAT
GGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCA
TGCCCAATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCT
CCATCAGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCC
TGTATTGATGTTGATATTAACTTGTAAACGAATAAAATAAAAAAAAAAANAAAAACACAC
CA
sequence update 2001. 3.22
Translated Amino Acid sequence 
*neiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*rtryhnqcirysr
*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrndsi*csir*ih
w*rcyhrskqc*nrly*c*y*lvne*nkik*NKNTPSIKKK---

---NKMRLLLALFFVLALVSPSFTQVWSNCGTAADKFQITNVVLDPPTPVKGQDITISAS
GILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPS
GKYTGNVVITDQNNAEIACIDVDINL*tnkikkkxkth
Translated Amino Acid sequence (All Frames) 
Frame A:
nkmrlllalffvlalvspsftqvwsncgtaadkfqitnvvldpptpvkgqditisasgil
detvtggnvavkvkygfitlinenvsicssqdplacpiaagdyqknmtemipsdapsgky
tgnvvitdqnnaeiacidvdinl*tnkik*nkikthhr*kk---

---NKMRLLLALFFVLALVSPSFTQVWSNCGTAADKFQITNVVLDPPTPVKGQDITISAS
GILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPS
GKYTGNVVITDQNNAEIACIDVDINL*tnkikkkxkth

Frame B:
ik*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlkdkisqsvhqvfs
mkpslvemlplksnmvslhlsmkmflfavlkth*haqlllvitkri*pk*fhlmlhqvnt
lvtllspiktmlkspvlmliltckrik*nkik*khtidkkk---

---ik*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlkdkisqsvhq
vfsmkpslvemlplksnmvslhlsmkmflfavlkth*haqlllvitkri*pk*fhlmlhq
vntlvtllspiktmlkspvlmliltckrik*kkkxkht

Frame C:
*neiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*rtryhnqcirysr
*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrndsi*csir*ih
w*rcyhrskqc*nrly*c*y*lvne*nkik*NKNTPSIKKK---

---*neiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*rtryhnqcir
ysr*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrndsi*csir
*ihw*rcyhrskqc*nrly*c*y*lvne*nkkkxkntp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK373 (VSK373Q) /CSM/VS/VSK3-D/VSK373Q.Seq.d/                        868   0.0
VSJ851 (VSJ851Q) /CSM/VS/VSJ8-C/VSJ851Q.Seq.d/                        868   0.0
VSJ841 (VSJ841Q) /CSM/VS/VSJ8-B/VSJ841Q.Seq.d/                        868   0.0
VSJ452 (VSJ452Q) /CSM/VS/VSJ4-C/VSJ452Q.Seq.d/                        868   0.0
VSI417 (VSI417Q) /CSM/VS/VSI4-A/VSI417Q.Seq.d/                        868   0.0
VSI354 (VSI354Q) /CSM/VS/VSI3-C/VSI354Q.Seq.d/                        868   0.0
VSG174 (VSG174Q) /CSM/VS/VSG1-D/VSG174Q.Seq.d/                        868   0.0
VSG156 (VSG156Q) /CSM/VS/VSG1-C/VSG156Q.Seq.d/                        868   0.0
VSA770 (VSA770Q) /CSM/VS/VSA7-C/VSA770Q.Seq.d/                        868   0.0
VHF348 (VHF348Q) /CSM/VH/VHF3-B/VHF348Q.Seq.d/                        868   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX405179|AX405179.1 Sequence 3 from Patent WO0229023.             40  9e-05  4
BX160259|BX160259.1 Danio rerio genomic clone DKEY-146C24, genomic survey sequence.    46  0.80  1
AC126782|AC126782.12 Medicago truncatula clone mth2-14p11, WORKING DRAFT SEQUENCE, 36 unordered pieces.    44  3.2  1
AC141863|AC141863.6 Medicago truncatula clone mth2-14b10, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  3.2  4
AQ261015|AQ261015.1 CITBI-E1-2515P5.TR CITBI-E1 Homo sapiens genomic clone 2515P5, DNA sequence.    34  8.8  2
AC073751|AC073751.2 Mus musculus clone RP23-330I6, WORKING DRAFT SEQUENCE, 17 ordered pieces.    36  9.7  2
AC105571|AC105571.4 Rattus norvegicus clone CH230-232I12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42     12  1
AC120833|AC120833.4 Rattus norvegicus clone CH230-91L4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42     12  1
CC016838|CC016838.1 PUGJW25TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa401E01, DNA sequence.    42     12  1
AL353814|AL353814.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26G5.    42     85  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SZ8) RecName: Full=Putative phosphatidylglycerol/phosphatidy...   133   7e-30
(Q54KP7) RecName: Full=Putative phosphatidylglycerol/phosphatidy...    85   4e-15
(Q4P580) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    84   5e-15
(Q7RZ85) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    72   2e-11
(Q4X136) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   2e-10
(Q6CNE0) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   2e-10
AK227594_1(AK227594|pid:none) Arabidopsis thaliana mRNA for hypo...    68   4e-10
CP000502_275(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    67   7e-10
(Q12408) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    66   1e-09
AM920430_43(AM920430|pid:none) Penicillium chrysogenum Wisconsin...    65   2e-09
protein update 2009. 3.26
PSORT 

 psg: 0.62  gvh: 0.88  alm: 0.24  top: 0.00  tms: 0.07  mit: 0.38  mip: 0.04
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VSK373 is cyt
5' end seq. ID VSK373F
5' end seq. 
>VSK373F.Seq
AATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCATCTTTC
ACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATGTAGTA
TTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATCAGGTATTCTC
GATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTACACTT
ATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCT
GGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGTAAATAC
ACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGATGTTGAT
ATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGATAAAAA
AAAAA----------
Length of 5' end seq. 485
3' end seq. ID VSK373Z
3' end seq. 
>VSK373Z.Seq
----------AATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTC
CCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTAC
CAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATC
AGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTT
CATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCC
AATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATC
AGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTAT
TGATGTTGATATTAACTTGTAAACGAATAAAATAAAAAAAAAAANAAAAACACACCA
Length of 3' end seq. 467
Connected seq. ID VSK373P
Connected seq. 
>VSK373P.Seq
AATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCATCTTTC
ACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATGTAGTA
TTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATCAGGTATTCTC
GATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTACACTT
ATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCT
GGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGTAAATAC
ACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGATGTTGAT
ATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGATAAAAA
AAAAA----------AATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTA
GTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAA
ATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGT
GCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATAT
GGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCA
TGCCCAATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCT
CCATCAGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCC
TGTATTGATGTTGATATTAACTTGTAAACGAATAAAATAAAAAAAAAAANAAAAACACAC
CA
Length of connected seq. 952
Full length Seq ID -
Full length Seq. -
Length of full length seq. -