>VSK364 (VSK364Q) /CSM/VS/VSK3-C/VSK364Q.Seq.d/
CAACAAGCCTTGCAATCAAGACCTTCACCACCTCCACCAAACAATAATAGCGGTTCAGCA
TTACATTCTTGTCCAATGTGTTCAAATAAATATCCAGAATCTGAAATTAATAACCACGTA
AATAGTCATTTTGATTCTGATTCTTCAAGTCAATCCAGACCACAACAACCACAACCTCAA
ACACAACAAAATAATCAAGGTTTCTATCCACAATTTCAAAGAAAGTAAATAGTAAAAGAG
ATTAACTAAAAGTCATTCCTTTTCTTATTAGGTTTTGGTATGATTGTATAATTCAAAAAA
AAAAXXXXXXXXXXCAACAAGCCTTGCAATCAAGACCTTCACCACCTCCACCAAACAATA
ATAGCGGTTCAGCATTACATTCTTGTCCAATGTGTTCAAATAAATATCCAGAATCTGAAA
TTAATAACCACGTAAATAGTCATTTTGATTCTGATTCTTCAAGTCAATCCAGACCACAAC

tslaiktfttstkq**rfsitflsnvfk*isri*n**prk*sf*f*ffksiqttttttsn
ttk*srflstiskkvnskrd*LKVIPFLIRFWYDCIIQKK---

---QQALQSRPSPPPPNNNSGSALHSCPMCSNKYPESEINNHVNSHFDSDSSSQSRPQ

Frame A:
qqalqsrpsppppnnnsgsalhscpmcsnkypeseinnhvnshfdsdsssqsrpqqpqpq
tqqnnqgfypqfqrk*ivkein*ksflfllgfgmiv*fkkk---

---QQALQSRPSPPPPNNNSGSALHSCPMCSNKYPESEINNHVNSHFDSDSSSQSRPQ

Frame B:
nkpcnqdlhhlhqtiiavqhyilvqcvqiniqnlklitt*ivilililqvnpdhnnhnlk
hnkiikvsihnfkesk**krltkshsfsy*vlv*lynskkk---

---nkpcnqdlhhlhqtiiavqhyilvqcvqiniqnlklitt*ivilililqvnpdhn

Frame C:
tslaiktfttstkq**rfsitflsnvfk*isri*n**prk*sf*f*ffksiqttttttsn
ttk*srflstiskkvnskrd*LKVIPFLIRFWYDCIIQKK---

---tslaiktfttstkq**rfsitflsnvfk*isri*n**prk*sf*f*ffksiqtt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK364 (VSK364Q) /CSM/VS/VSK3-C/VSK364Q.Seq.d/                        583   e-166
SSD129 (SSD129Q) /CSM/SS/SSD1-B/SSD129Q.Seq.d/                        565   e-160
SFJ467 (SFJ467Q) /CSM/SF/SFJ4-C/SFJ467Q.Seq.d/                        545   e-154
CHD225 (CHD225Q) /CSM/CH/CHD2-B/CHD225Q.Seq.d/                        385   e-106
CFG672 (CFG672Q) /CSM/CF/CFG6-C/CFG672Q.Seq.d/                        377   e-103
VFO558 (VFO558Q) /CSM/VF/VFO5-C/VFO558Q.Seq.d/                        329   2e-89
SFJ511 (SFJ511Q) /CSM/SF/SFJ5-A/SFJ511Q.Seq.d/                        248   7e-65
CFE170 (CFE170Q) /CSM/CF/CFE1-C/CFE170Q.Seq.d/                         46   5e-04
SLJ555 (SLJ555Q) /CSM/SL/SLJ5-C/SLJ555Q.Seq.d/                         42   0.008
SHK448 (SHK448Q) /CSM/SH/SHK4-B/SHK448Q.Seq.d/                         42   0.008

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY209002|AY209002.1 Lupinus angustifolius serine-proline rich repeat protein mRNA, partial cds.    36  0.022  2
AC118802|AC118802.6 Rattus norvegicus clone CH230-72B9, WORKING DRAFT SEQUENCE, 61 unordered pieces.    50  0.025  1
CD486559|CD486559.2 CRH4.4A11 Cotton Root and Hypocotyl Lambda ZIPLOX Library (CRH) Gossypium hirsutum cDNA clone CRH4.4A11 5', mRNA sequence.    36  0.031  2
AW100096|AW100096.1 sd20c05.y2 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-2241 5', mRNA sequence.    36  0.048  2
BI893014|BI893014.1 sag82b07.y1 Gm-c1084 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1084-470 5' similar to TR:Q39835 Q39835 EXTENSIN. ;, mRNA sequence.    36  0.052  2
BQ079583|BQ079583.1 san15f03.y1 Gm-c1084 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1084-4086 5' similar to TR:Q39835 Q39835 EXTENSIN. ;, mRNA sequence.    36  0.054  2
BU764184|BU764184.1 sas53f10.y1 Gm-c1023 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1023-4507 5', mRNA sequence.    36  0.059  2
AA484400|AA484400.1 nf10e04.s1 NCI_CGAP_Li1 Homo sapiens cDNA clone IMAGE:913374 similar to contains element MSR1 MSR1 repetitive element ;, mRNA sequence.    30  0.074  3
AW164667|AW164667.1 se76a06.y1 Gm-c1023 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1023-587 5' similar to TR:Q39865 Q39865 HYDROXYPROLINE-RICH GLYCOPROTEIN ;, mRNA sequence.    34  0.13  2
BG363213|BG363213.1 sac11f12.y1 Gm-c1040 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1040-4487 5', mRNA sequence.    36  0.19  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 560,946,140

 psg: 0.75  gvh: 0.34  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VSK364 is cyt

>VSK364F.Seq
CAACAAGCCTTGCAATCAAGACCTTCACCACCTCCACCAAACAATAATAGCGGTTCAGCA
TTACATTCTTGTCCAATGTGTTCAAATAAATATCCAGAATCTGAAATTAATAACCACGTA
AATAGTCATTTTGATTCTGATTCTTCAAGTCAATCCAGACCACAACAACCACAACCTCAA
ACACAACAAAATAATCAAGGTTTCTATCCACAATTTCAAAGAAAGTAAATAGTAAAAGAG
ATTAACTAAAAGTCATTCCTTTTCTTATTAGGTTTTGGTATGATTGTATAATTCAAAAAA
AAAA----------

>VSK364Z.Seq
----------CAACAAGCCTTGCAATCAAGACCTTCACCACCTCCACCAAACAATAATAG
CGGTTCAGCATTACATTCTTGTCCAATGTGTTCAAATAAATATCCAGAATCTGAAATTAA
TAACCACGTAAATAGTCATTTTGATTCTGATTCTTCAAGTCAATCCAGACCACAAC

>VSK364P.Seq
CAACAAGCCTTGCAATCAAGACCTTCACCACCTCCACCAAACAATAATAGCGGTTCAGCA
TTACATTCTTGTCCAATGTGTTCAAATAAATATCCAGAATCTGAAATTAATAACCACGTA
AATAGTCATTTTGATTCTGATTCTTCAAGTCAATCCAGACCACAACAACCACAACCTCAA
ACACAACAAAATAATCAAGGTTTCTATCCACAATTTCAAAGAAAGTAAATAGTAAAAGAG
ATTAACTAAAAGTCATTCCTTTTCTTATTAGGTTTTGGTATGATTGTATAATTCAAAAAA
AAAA----------CAACAAGCCTTGCAATCAAGACCTTCACCACCTCCACCAAACAATA
ATAGCGGTTCAGCATTACATTCTTGTCCAATGTGTTCAAATAAATATCCAGAATCTGAAA
TTAATAACCACGTAAATAGTCATTTTGATTCTGATTCTTCAAGTCAATCCAGACCACAAC