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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK347
Library VS
(Link to library)
Clone ID VSK347
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15789-1
Original site URL
Representative seq. ID VSK347P
(Link to Original site)
Representative DNA sequence 
>VSK347 (VSK347Q) /CSM/VS/VSK3-B/VSK347Q.Seq.d/
TCTGCNAANAGGCTGATATTGATACCTCAAAAAGAGCTGGTGAACTTTCAAAAGATGAAG
TCGAAAGATTAACCACCATCATGAATCXXXXXXXXXXCGTTTCATTGAGAATAGTGAAAG
ATTAAATATACCCTTATCACCTGATAATTTAGCTCGAGTTAAAAGAAATACAAAGTCAAC
CAGTTGAATTGGCTAGAAATAGATTACCAAGATTCCCCCTAAAATTAGGTTGGGATTGTA
AATGTATTTGGGAAGATAAAGTAATTCAATCAGTTTATAATCATTCAAAAATTTGTTCAG
AAATTAGAACTCCTGGTAGACCAAAATAGTAAGTAAAATACATTATTACTATTATTATTA
TTATTATTATTATTATTTAATTCTTTATTTACATATACTAATTTAGTATTTAAAACTCTA
TAGTTATATGGATAGAATGTTTAAAGTATTTGATCCAAGTTATACACCCACAGAGATGGA
TATTATTAGTGCATATGATCAAAAGGATACTATTCAATCATCAGCAATCATTCATAAAAG
ATTTAAAGTGGATTTATTTGGATGTTCAGGTAAGCAATCTTCACCAAAGAATTGGGTTGG
TTTACATCAAAATTATAAACCAAATTATATATTTTATGTTGTAGCTTTAAAAGAGTAAGT
GAAAGAATTAATATTAAACAAACAAACAAAAAAACAAAAAACTATCAAAAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
CXXADIDTSKRAGELSKDEVERLTTIMN---

---RFIENSERLNIPLSPDNLARVKRNTKSTS*ig*k*itkippkirlgl*mylgr*sns
isl*sfknlfrn*nsw*tkivskihyyyyyyyyyyylilylhili*ylklysymdrmfkv
fdpsytptemdiisaydqkdtiqssaiihkrfkvdlfgcsgkqsspknwvglhqnykpny
ifyvvalke*vkelilnkqtkkqktikn
Translated Amino Acid sequence (All Frames) 
Frame A:
saxrlilipqkelvnfqkmkskd*pps*i---

---RFIENSERLNIPLSPDNLARVKRNTKSTS*ig*k*itkippkirlgl*mylgr*sns
isl*sfknlfrn*nsw*tkivskihyyyyyyyyyyylilylhili*ylklysymdrmfkv
fdpsytptemdiisaydqkdtiqssaiihkrfkvdlfgcsgkqsspknwvglhqnykpny
ifyvvalke*vkelilnkqtkkqktikn

Frame B:
lxxg*y*ylkksw*tfkr*srkinhhhe---

---vslrivkd*iypyhlii*lelkeiqsqpvelarnrlprfplklgwdckciwedkviq
svynhskicseirtpgrpk**vkyiitiiiiiiiii*ffiyiy*fsi*nsiviwieclky
liqvihpqrwillvhmikrilfnhqqsfikdlkwiyldvqvsnlhqriglvyikiinqii
yfml*l*ksk*kn*y*tnkqknkklski

Frame C:
CXXADIDTSKRAGELSKDEVERLTTIMN---

---fh*e**kikytlit**fsss*kkykvnqlnwleidyqdsp*n*vgivnvfgkik*fn
qfiiiqkfvqklellvdqnsk*ntlllllllllllfnslftytnlvfktl*lyg*nv*si
*sklythrdgyy*ci*skgyysiisnhs*ki*sgfiwmfr*aiftkelgwftskl*tkly
ilccsfkrvserinikqtnkktknyqk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK347 (VSK347Q) /CSM/VS/VSK3-B/VSK347Q.Seq.d/                        605   e-172
CHN126 (CHN126Q) /CSM/CH/CHN1-B/CHN126Q.Seq.d/                        450   e-125
CHE537 (CHE537Q) /CSM/CH/CHE5-B/CHE537Q.Seq.d/                        450   e-125
AHK426 (AHK426Q) /CSM/AH/AHK4-B/AHK426Q.Seq.d/                        436   e-121
SHK342 (SHK342Q) /CSM/SH/SHK3-B/SHK342Q.Seq.d/                        434   e-121
SHD445 (SHD445Q) /CSM/SH/SHD4-B/SHD445Q.Seq.d/                        434   e-121
CHR482 (CHR482Q) /CSM/CH/CHR4-D/CHR482Q.Seq.d/                        381   e-104
VSK426 (VSK426Q) /CSM/VS/VSK4-B/VSK426Q.Seq.d/                        161   2e-38
VSG870 (VSG870Q) /CSM/VS/VSG8-C/VSG870Q.Seq.d/                        161   2e-38
VSE569 (VSE569Q) /CSM/VS/VSE5-C/VSE569Q.Seq.d/                        161   2e-38
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   583  0.0  3
AF019985|AF019985.1 Dictyostelium discoideum Spalten (spnA) mRNA, complete cds.   450  0.0  3
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   161  2e-32  4
U41263|U41263.2 Caenorhabditis elegans cosmid T19D12, complete sequence.    46  0.44  3
AL845351|AL845351.6 Zebrafish DNA sequence from clone DKEYP-44A9 in linkage group 20.    38  0.45  4
BQ438498|BQ438498.1 AGENCOURT_7908255 NIH_MGC_82 Homo sapiens cDNA clone IMAGE:6102449 5', mRNA sequence.    46  0.59  1
CC621012|CC621012.1 OGMAW07TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0331B13, genomic survey sequence.    46  0.59  1
CC621020|CC621020.1 OGMAW07TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0331B13, genomic survey sequence.    46  0.59  1
AC017363|AC017363.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40  2.0  2
AX344985|AX344985.1 Sequence 56 from Patent WO0200928.            44  2.3  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869U7) RecName: Full=40S ribosomal protein S18;  &AC114263_10(...    54   5e-06
EU124943_1(EU124943|pid:none) Arenicola marina ribosomal protein...    44   0.005
(Q8IT98) RecName: Full=40S ribosomal protein S18;  &AF526232_1(A...    43   0.010
EU116886_1(EU116886|pid:none) Sipunculus nudus putative ribosoma...    42   0.014
AE017350_293(AE017350|pid:none) Cryptococcus neoformans var. neo...    41   0.039
BC068873_1(BC068873|pid:none) Xenopus laevis hypothetical protei...    41   0.039
(Q90YQ5) RecName: Full=40S ribosomal protein S18;  &AF402827_1(A...    41   0.039
FJ608659_1(FJ608659|pid:none) Tetranychus cinnabarinus ribosomal...    41   0.039
AY342352_1(AY342352|pid:none) Ixodes ricinus ribosomal protein S...    40   0.052
BT043500_1(BT043500|pid:none) Salmo salar clone HM4_0506 ribosom...    40   0.067
protein update 2009. 3.26
PSORT 

 psg: 0.46  gvh: 0.27  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSK347 is cyt
5' end seq. ID VSK347F
5' end seq. 
>VSK347F.Seq
TCTGCNAANAGGCTGATATTGATACCTCAAAAAGAGCTGGTGAACTTTCAAAAGATGAAG
TCGAAAGATTAACCACCATCATGAATC----------
Length of 5' end seq. 87
3' end seq. ID VSK347Z
3' end seq. 
>VSK347Z.Seq
----------CGTTTCATTGAGAATAGTGAAAGATTAAATATACCCTTATCACCTGATAA
TTTAGCTCGAGTTAAAAGAAATACAAAGTCAACCAGTTGAATTGGCTAGAAATAGATTAC
CAAGATTCCCCCTAAAATTAGGTTGGGATTGTAAATGTATTTGGGAAGATAAAGTAATTC
AATCAGTTTATAATCATTCAAAAATTTGTTCAGAAATTAGAACTCCTGGTAGACCAAAAT
AGTAAGTAAAATACATTATTACTATTATTATTATTATTATTATTATTATTTAATTCTTTA
TTTACATATACTAATTTAGTATTTAAAACTCTATAGTTATATGGATAGAATGTTTAAAGT
ATTTGATCCAAGTTATACACCCACAGAGATGGATATTATTAGTGCATATGATCAAAAGGA
TACTATTCAATCATCAGCAATCATTCATAAAAGATTTAAAGTGGATTTATTTGGATGTTC
AGGTAAGCAATCTTCACCAAAGAATTGGGTTGGTTTACATCAAAATTATAAACCAAATTA
TATATTTTATGTTGTAGCTTTAAAAGAGTAAGTGAAAGAATTAATATTAAACAAACAAAC
AAAAAAACAAAAAACTATCAAAAATAA
Length of 3' end seq. 617
Connected seq. ID VSK347P
Connected seq. 
>VSK347P.Seq
TCTGCNAANAGGCTGATATTGATACCTCAAAAAGAGCTGGTGAACTTTCAAAAGATGAAG
TCGAAAGATTAACCACCATCATGAATC----------CGTTTCATTGAGAATAGTGAAAG
ATTAAATATACCCTTATCACCTGATAATTTAGCTCGAGTTAAAAGAAATACAAAGTCAAC
CAGTTGAATTGGCTAGAAATAGATTACCAAGATTCCCCCTAAAATTAGGTTGGGATTGTA
AATGTATTTGGGAAGATAAAGTAATTCAATCAGTTTATAATCATTCAAAAATTTGTTCAG
AAATTAGAACTCCTGGTAGACCAAAATAGTAAGTAAAATACATTATTACTATTATTATTA
TTATTATTATTATTATTTAATTCTTTATTTACATATACTAATTTAGTATTTAAAACTCTA
TAGTTATATGGATAGAATGTTTAAAGTATTTGATCCAAGTTATACACCCACAGAGATGGA
TATTATTAGTGCATATGATCAAAAGGATACTATTCAATCATCAGCAATCATTCATAAAAG
ATTTAAAGTGGATTTATTTGGATGTTCAGGTAAGCAATCTTCACCAAAGAATTGGGTTGG
TTTACATCAAAATTATAAACCAAATTATATATTTTATGTTGTAGCTTTAAAAGAGTAAGT
GAAAGAATTAATATTAAACAAACAAACAAAAAAACAAAAAACTATCAAAAATAA
Length of connected seq. 704
Full length Seq ID -
Full length Seq. -
Length of full length seq. -