NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK341
Library VS
(Link to library)
Clone ID VSK341
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14527-1
Original site URL
Representative seq. ID VSK341E
(Link to Original site)
Representative DNA sequence 
>VSK341 (VSK341Q) /CSM/VS/VSK3-B/VSK341Q.Seq.d/
CGCGTCCGGATAAACTTTATATTATTCATAATTTTTACTCTGATTCAGTTAAACAAGTTT
TAAAAGATATTCTTCCAATACGTTTCAGAAAATGTAAATGAAGTTATCATTCTTCATTGG
AGTCATCTTTATCTTGTCGATGAAGATAATAAATTATTAATGAAGATGATAATTGAAATA
TTAGGAAAATTCATGTCAAATAGTAATAAAGGACCAGATGTTAAAGTTGGAGATTTAGCT
GGTACACCAATTATTTGTATATATGATGATTTAGTAAATCCATTAAGTAATGGTGGTGCT
GGTGGTAATGGAAAAAGACCAGATATTCGTGATCCAAGACTTTGGGATCCTTCATGTATA
TCCTCACCTTATGAAACTTCAAGATATCATAGTTTCGAATCAATTTTAAAATTTTTAAAA
TCTAGAATTAATGTACCAAAAAGAAAAGTTCTCCATGTTTGTCAAGCAATTCTTACAATT
GAATTTTCTTATGAATTCTTTGGACATGACTTAATAACTTGGACTGTAGAACATCGTAAT
AAATTCAATGAATTCTTTAATGATCTTGAAACCTTTGCTTCACCAACAAATATTATAATG
ACTGATTTCGTTACATTTTATCCATTATCTTCATATTGTATTCGTAGAAATACTTAGAAT
TTAATAATAGTAA
sequence update 2001. 3.26
Translated Amino Acid sequence 
rvrinfilfiiftliqlnkf*KIFFQYVSENVNEVIILHWSHLYLVDEDNKLLMKMIIEI
LGKFMSNSNKGPDVKVGDLAGTPIICIYDDLVNPLSNGGAGGNGKRPDIRDPRLWDPSCI
SSPYETSRYHSFESILKFLKSRINVPKRKVLHVCQAILTIEFSYEFFGHDLITWTVEHRN
KFNEFFNDLETFASPTNIIMTDFVTFYPLSSYCIRRNT*nliiv
Translated Amino Acid sequence (All Frames) 
Frame A:
rvrinfilfiiftliqlnkf*KIFFQYVSENVNEVIILHWSHLYLVDEDNKLLMKMIIEI
LGKFMSNSNKGPDVKVGDLAGTPIICIYDDLVNPLSNGGAGGNGKRPDIRDPRLWDPSCI
SSPYETSRYHSFESILKFLKSRINVPKRKVLHVCQAILTIEFSYEFFGHDLITWTVEHRN
KFNEFFNDLETFASPTNIIMTDFVTFYPLSSYCIRRNT*nliiv


Frame B:
asg*tlyys*fll*fs*tsfkryssntfqkm*mklsffigvifilsmkiiny**r**lky
*enscqivikdqmlklei*lvhqlfvymmi**ih*vmvvlvvmekdqifviqdfgilhvy
phlmklqdiivsnqf*nf*nlelmyqkekfsmfvkqflqlnflmnsldmt**lgl*nivi
nsmnslmilkpllhqqil**lislhfihylhivfveilri****


Frame C:
rpdklyiihnfysdsvkqvlkdilpirfrkck*syhsslesslscr*r**iineddn*ni
rkihvk***rtrc*swrfswytnylyi**fsksik*wwcww*wkktrys*sktlgsfmyi
ltl*nfkis*frinfkifki*n*ctkkksspclssnsyn*ifl*ilwt*lnnldcrts**
iq*il**s*nlcftnkyynd*fryilsiifilys*kylefnns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK341 (VSK341Q) /CSM/VS/VSK3-B/VSK341Q.Seq.d/                       1334   0.0
VHA187 (VHA187Q) /CSM/VH/VHA1-D/VHA187Q.Seq.d/                       1289   0.0
VHB385 (VHB385Q) /CSM/VH/VHB3-D/VHB385Q.Seq.d/                       1281   0.0
SFL418 (SFL418Q) /CSM/SF/SFL4-A/SFL418Q.Seq.d/                       1241   0.0
VHI804 (VHI804Q) /CSM/VH/VHI8-A/VHI804Q.Seq.d/                       1223   0.0
VHJ542 (VHJ542Q) /CSM/VH/VHJ5-B/VHJ542Q.Seq.d/                       1126   0.0
VFC464 (VFC464Q) /CSM/VF/VFC4-C/VFC464Q.Seq.d/                        930   0.0
SSG273 (SSG273Q) /CSM/SS/SSG2-D/SSG273Q.Seq.d/                        777   0.0
VHE543 (VHE543Q) /CSM/VH/VHE5-B/VHE543Q.Seq.d/                        745   0.0
VHO505 (VHO505Q) /CSM/VH/VHO5-A/VHO505Q.Seq.d/                        444   e-124
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U80927|U80927.1 Dictyostelium discoideum unknown protein gene, complete cds.    52  0.009  1
AC125020|AC125020.3 Mus musculus clone RP24-181E5, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38  0.013  7
AC120716|AC120716.3 Rattus norvegicus clone CH230-128B4, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.021  6
U09639|U09639.1 Mus spretus mitochondrion NADH dehydrogenase subunit 3 gene, partial cds.    50  0.035  1
AC115990|AC115990.5 Homo sapiens chromosome 11, clone CTC-830E23, complete sequence.    34  0.048  8
AC120649|AC120649.4 Rattus norvegicus clone CH230-453K12, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  0.086  5
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  0.095  7
AC113915|AC113915.5 Rattus norvegicus clone CH230-388H5, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44  0.15  4
AC023052|AC023052.30 Homo sapiens chromosome 12 clone RP11-1056H16, WORKING DRAFT SEQUENCE, 1 unordered pieces.    38  0.16  7
AP003193|AP003193.2 Clostridium perfringens DNA, complete genome, section 9/10.    36  0.17  10
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80927_1(U80927|pid:none) Dictyostelium discoideum unknown prote...   108   1e-22
CR954253_864(CR954253|pid:none) Lactobacillus delbrueckii subsp....    38   0.30
CP000233_1045(CP000233|pid:none) Lactobacillus salivarius UCC118...    33   5.7
AF151717_1(AF151717|pid:none) Mus musculus putative extracellula...    33   9.7
AF169187_1(AF169187|pid:none) Triticum aestivum gypsy type retro...    33   9.7
(Q2QI47) RecName: Full=Usherin; AltName: Full=Usher syndrome typ...    33   9.7
AM910989_25(AM910989|pid:none) Plasmodium knowlesi strain H chro...    33   9.7
protein update 2009. 3.26
PSORT 

 psg: 0.72  gvh: 0.32  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSK341 is cyt
5' end seq. ID VSK341F
5' end seq. 
>VSK341F.Seq
CGCGTCCGGATAAACTTTATATTATTCATAATTTTTACTCTGATTCAGTTAAACAAGTTT
TAAAAGATATTCTTCAATACGTTTCAGAAAATGTAAATGAAGTTATCATTCTTCATTGGA
GTCATCTTTATCTTGTCGATGAAGATAATAAATTATTAATGAAGATGATAATTGAAATAT
TAGGAAAATTCATGTCAAATAGTAATAAAGGACCAGATGTTAAAGTTGGAGATTTAGCTG
GTACACCAATTATTTGTATATATGATGATTTAGTAAATCCATTAAGTAATGGTGGTGCTG
GTGGTAATGGAAAAAGACCAGATATTCGTGATCCAAGACTTTGGGATCCTTCATGTATAT
CCTCACCTTATGAAACTTCAAGATATCATAGTTTCGAATCAATTTTAAAATTTTTAAAAT
CTAGAATTAATGTACCAAAAAGAAAAGTTCTCCATGTTTGTCAAGCAATTCTTACAATTG
AATTTTCTTATGAATTCTTTGGACATGACTTAATAACTTGGACTGTAGAACA--------
--
Length of 5' end seq. 532
3' end seq. ID VSK341Z
3' end seq. 
>VSK341Z.Seq
----------TCTGATTCAGTTAAACAAGTTTTAAAAGATATTCTTCCAATACGTTTCAG
AAAATGTAAATGAAGTTATCATTCTTCATTGGAGTCATCTTTATCTTGTCGATGAAGATA
ATAAATTATTAATGAAGATGATAATTGAAATATTAGGAAAATTCATGTCAAATAGTAATA
AAGGACCAGATGTTAAAGTTGGAGATTTAGCTGGTACACCAATTATTTGTATATATGATG
ATTTAGTAAATCCATTAAGTAATGGTGGTGCTGGTGGTAATGGAAAAAGACCAGATATTC
GTGATCCAAGACTTTGGGATCCTTCATGTATATCCTCACCTTATGAAACTTCAAGATATC
ATAGTTTCGAATCAATTTTAAAATTTTTAAAATCTAGAATTAATGTACCAAAAAGAAAAG
TTCTCCATGTTTGTCAAGCAATTCTTACAATTGAATTTTCTTATGAATTCTTTGGACATG
ACTTAATAACTTGGACTGTAGAACATCGTAATAAATTCAATGAATTCTTTAATGATCTTG
AAACCTTTGCTTCACCAACAAATATTATAATGACTGATTTCGTTACATTTTATCCATTAT
CTTCATATTGTATTCGTAGAAATACTTAGAATTTAATAATAGTAA
Length of 3' end seq. 635
Connected seq. ID VSK341P
Connected seq. 
>VSK341P.Seq
CGCGTCCGGATAAACTTTATATTATTCATAATTTTTACTCTGATTCAGTTAAACAAGTTT
TAAAAGATATTCTTCAATACGTTTCAGAAAATGTAAATGAAGTTATCATTCTTCATTGGA
GTCATCTTTATCTTGTCGATGAAGATAATAAATTATTAATGAAGATGATAATTGAAATAT
TAGGAAAATTCATGTCAAATAGTAATAAAGGACCAGATGTTAAAGTTGGAGATTTAGCTG
GTACACCAATTATTTGTATATATGATGATTTAGTAAATCCATTAAGTAATGGTGGTGCTG
GTGGTAATGGAAAAAGACCAGATATTCGTGATCCAAGACTTTGGGATCCTTCATGTATAT
CCTCACCTTATGAAACTTCAAGATATCATAGTTTCGAATCAATTTTAAAATTTTTAAAAT
CTAGAATTAATGTACCAAAAAGAAAAGTTCTCCATGTTTGTCAAGCAATTCTTACAATTG
AATTTTCTTATGAATTCTTTGGACATGACTTAATAACTTGGACTGTAGAACA--------
--TCTGATTCAGTTAAACAAGTTTTAAAAGATATTCTTCCAATACGTTTCAGAAAATGTA
AATGAAGTTATCATTCTTCATTGGAGTCATCTTTATCTTGTCGATGAAGATAATAAATTA
TTAATGAAGATGATAATTGAAATATTAGGAAAATTCATGTCAAATAGTAATAAAGGACCA
GATGTTAAAGTTGGAGATTTAGCTGGTACACCAATTATTTGTATATATGATGATTTAGTA
AATCCATTAAGTAATGGTGGTGCTGGTGGTAATGGAAAAAGACCAGATATTCGTGATCCA
AGACTTTGGGATCCTTCATGTATATCCTCACCTTATGAAACTTCAAGATATCATAGTTTC
GAATCAATTTTAAAATTTTTAAAATCTAGAATTAATGTACCAAAAAGAAAAGTTCTCCAT
GTTTGTCAAGCAATTCTTACAATTGAATTTTCTTATGAATTCTTTGGACATGACTTAATA
ACTTGGACTGTAGAACATCGTAATAAATTCAATGAATTCTTTAATGATCTTGAAACCTTT
GCTTCACCAACAAATATTATAATGACTGATTTCGTTACATTTTATCCATTATCTTCATAT
TGTATTCGTAGAAATACTTAGAATTTAATAATAGTAA
Length of connected seq. 1167
Full length Seq ID VSK341E
Full length Seq. 
>VSK341E.Seq
CGCGTCCGGATAAACTTTATATTATTCATAATTTTTACTCTGATTCAGTTAAACAAGTTT
TAAAAGATATTCTTCCAATACGTTTCAGAAAATGTAAATGAAGTTATCATTCTTCATTGG
AGTCATCTTTATCTTGTCGATGAAGATAATAAATTATTAATGAAGATGATAATTGAAATA
TTAGGAAAATTCATGTCAAATAGTAATAAAGGACCAGATGTTAAAGTTGGAGATTTAGCT
GGTACACCAATTATTTGTATATATGATGATTTAGTAAATCCATTAAGTAATGGTGGTGCT
GGTGGTAATGGAAAAAGACCAGATATTCGTGATCCAAGACTTTGGGATCCTTCATGTATA
TCCTCACCTTATGAAACTTCAAGATATCATAGTTTCGAATCAATTTTAAAATTTTTAAAA
TCTAGAATTAATGTACCAAAAAGAAAAGTTCTCCATGTTTGTCAAGCAATTCTTACAATT
GAATTTTCTTATGAATTCTTTGGACATGACTTAATAACTTGGACTGTAGAACATCGTAAT
AAATTCAATGAATTCTTTAATGATCTTGAAACCTTTGCTTCACCAACAAATATTATAATG
ACTGATTTCGTTACATTTTATCCATTATCTTCATATTGTATTCGTAGAAATACTTAGAAT
TTAATAATAGTAA
Length of full length seq. 673