>VSK340 (VSK340Q) /CSM/VS/VSK3-B/VSK340Q.Seq.d/
GCTTAAATGACAAATTTAAGGTTTAAGGGGAAAAGATAGGAGAAATAGAAGAGAGTAGTA
AGAGAAAAATGTTTATAACGGATCTCTATGCAAATAAGAAAAAGGACGTACGAATGAACG
AAAGGTTATAGGGAAAATATAAAAAAGAGTTAGCAATAGCAATTGAAGATCTATAAATAT
CCGAAGGGAGACCAAGAAAAAGAAGAAACGCAGTGAAGTGAAACATCTTAGTAACTGTAG
GAAAAAAAAAAAAAGGTTTATTAAAAAAAAAAXXXXXXXXXX

lk*qi*glrgkdrrnrre**eknvyngslck*ekgrtnerkvigki*krvsnsn*RSINI
RRETKKKKKRSEVKHLSNCRKKKKRFIKKK---

Frame A:
a*mtnlrfkgkr*ek*krvvrekcl*rismqirkrtye*tkgyrenikks*q*qlkiyky
pkgdqekeetq*sets**l*ekkkkvy*kk---


Frame B:
lk*qi*glrgkdrrnrre**eknvyngslck*ekgrtnerkvigki*krvsnsn*RSINI
RRETKKKKKRSEVKHLSNCRKKKKRFIKKK---


Frame C:
lndkfkv*gekigeieesskrkmfitdlyankkkdvrmnerl*gkykkelaiaiedl*is
egrprkrrnavk*nilvtvgkkkkgllkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK340 (VSK340Q) /CSM/VS/VSK3-B/VSK340Q.Seq.d/                        478   e-134
VSB752 (VSB752Q) /CSM/VS/VSB7-C/VSB752Q.Seq.d/                        478   e-134
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               478   e-134
VSD842 (VSD842Q) /CSM/VS/VSD8-B/VSD842Q.Seq.d/                        396   e-110
VSG190 (VSG190Q) /CSM/VS/VSG1-D/VSG190Q.Seq.d/                        391   e-108
VSA268 (VSA268Q) /CSM/VS/VSA2-C/VSA268Q.Seq.d/                        375   e-103
SHC457 (SHC457Q) /CSM/SH/SHC4-C/SHC457Q.Seq.d/                        361   4e-99
SHH465 (SHH465Q) /CSM/SH/SHH4-C/SHH465Q.Seq.d/                        347   6e-95
VSF886 (VSF886Q) /CSM/VS/VSF8-D/VSF886Q.Seq.d/                        343   9e-94
VSD419 (VSD419Q) /CSM/VS/VSD4-A/VSD419Q.Seq.d/                        341   3e-93

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   478  e-131  1
D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA.      478  e-131  1
AJ512794|AJ512794.1 Dictyostelium discoideum mRNA for LIS1 protein.   242  2e-60  1
AJ512336|AJ512336.1 Dictyostelium discoideum mRNA for LIS1 protein.   242  2e-60  1
AC144843|AC144843.1 Mus musculus chromosome 16 clone RP24-330H1 map 16, WORKING DRAFT SEQUENCE, 34 unordered pieces.    42  0.020  4
AQ678528|AQ678528.1 HS_2130_B2_G01_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2130 Col=2 Row=N, genomic survey sequence.    48  0.056  1
AF193903|AF193903.1 Cafeteria roenbergensis mitochondrial DNA, complete genome.    48  0.056  1
AC016532|AC016532.3 Homo sapiens chromosome 15 clone RP11-343I16 map 15, WORKING DRAFT SEQUENCE, 20 unordered pieces.    40  0.070  2
AJ294725|AJ294725.1 Astasia longa complete chloroplast genome.    46  0.079  4
AF086621|AF086621.2 Loofah witches'-broom phytoplasma tRNA-Ile gene, complete sequence; 23S ribosomal RNA gene, partial sequence; 16S ribosomal RNA and 23S ribosomal RNA genes, complete sequence; tRNA-Ile gene, complete sequence; 5S ribosomal RNA gene, complete sequence; and tRNA-Val and tRNA-Asn genes, complete sequence.    46  0.22  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 236,884,403

 psg: 0.21  gvh: 0.05  alm: 0.81  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.02
 nuc: 1.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for VSK340 is nuc

>VSK340F.Seq
GCTTAAATGACAAATTTAAGGTTTAAGGGGAAAAGATAGGAGAAATAGAAGAGAGTAGTA
AGAGAAAAATGTTTATAACGGATCTCTATGCAAATAAGAAAAAGGACGTACGAATGAACG
AAAGGTTATAGGGAAAATATAAAAAAGAGTTAGCAATAGCAATTGAAGATCTATAAATAT
CCGAAGGGAGACCAAGAAAAAGAAGAAACGCAGTGAAGTGAAACATCTTAGTAACTGTAG
GAAAAAAAAAAAAAGGTTTATTAAAAAAAAAA----------