NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK338
Library VS
(Link to library)
Clone ID VSK338
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15612-1
Original site URL
Representative seq. ID VSK338P
(Link to Original site)
Representative DNA sequence 
>VSK338 (VSK338Q) /CSM/VS/VSK3-B/VSK338Q.Seq.d/
GCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAG
GATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACC
AAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAAC
GTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACT
GAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACC
AAAAAAGTTGCTGACAACTAAATGGTTTAATTAAAATAAATTTTTTAATATATTTTAAAA
AAAAAAXXXXXXXXXXGCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTA
CGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCA
AAAGATCATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAG
CCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGA
AGATGAAAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTT
CAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTAAAGGTTTAATTAAAATAANTTTTT
AA
sequence update 2001. 3.22
Translated Amino Acid sequence 
rhqrihhqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepryqer
stqspchplkkekrr*krn*kiihccfishrqelqrspnqksc*QLNGLIKINFLIYFKK
K---

---AVTREYTINLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQG
IKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKVADN*rfn*nxfl
Translated Amino Acid sequence (All Frames) 
Frame A:
avtreytinlhkrlygttfkdrapkavkqvklfaqkimgtkdvridnklnkflwsqgikn
vphrvrvtlsrkrnedenateklytvaslvivksfkglqtkkvadn*mv*lk*if*yilk
kk---

---AVTREYTINLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQG
IKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKVADN*rfn*nxfl

Frame B:
pspentpsistrdstelpsriepqklsnksssllkrswvpkmsvlitn*tnsygakvsrt
fhtesvspsqeretkmktqlknytlllh*sssraskvskpkkllttkwfn*nkffnif*k
k---

---pspentpsistrdstelpsriepqklsnksssllkrswvpkmsvlitn*tnsygakv
srtfhtesvspsqeretkmktqlknytlllh*sssraskvskpkkllttkglikixf*

Frame C:
rhqrihhqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepryqer
stqspchplkkekrr*krn*kiihccfishrqelqrspnqksc*QLNGLIKINFLIYFKK
K---

---rhqrihhqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepry
qerstqspchplkkekrr*krn*kiihccfishrqelqrspnqksc*qlkv*lk*xf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK338 (VSK338Q) /CSM/VS/VSK3-B/VSK338Q.Seq.d/                        706   0.0
VSJ839 (VSJ839Q) /CSM/VS/VSJ8-B/VSJ839Q.Seq.d/                        706   0.0
VSI719 (VSI719Q) /CSM/VS/VSI7-A/VSI719Q.Seq.d/                        706   0.0
VSG709 (VSG709Q) /CSM/VS/VSG7-A/VSG709Q.Seq.d/                        706   0.0
VSG684 (VSG684Q) /CSM/VS/VSG6-D/VSG684Q.Seq.d/                        706   0.0
VSG576 (VSG576Q) /CSM/VS/VSG5-D/VSG576Q.Seq.d/                        706   0.0
VSG544 (VSG544Q) /CSM/VS/VSG5-B/VSG544Q.Seq.d/                        706   0.0
VSG250 (VSG250Q) /CSM/VS/VSG2-C/VSG250Q.Seq.d/                        706   0.0
VSF671 (VSF671Q) /CSM/VS/VSF6-C/VSF671Q.Seq.d/                        706   0.0
VSF237 (VSF237Q) /CSM/VS/VSF2-B/VSF237Q.Seq.d/                        706   0.0
own update 2002. 8.19
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BJ175497|BJ175497.1 Physcomitrella patens subsp. patens cDNA clone:pphb14p23, 5' end, single read.    58  2e-04  1
AW156111|AW156111.1 ga23g11.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU031221 5' similar to SW:RL31_PICMA O65071 60S RIBOSOMAL PROTEIN L31. ;, mRNA sequence.    58  2e-04  1
CB084704|CB084704.1 hq20f02.b1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq20f02, mRNA sequence.    58  2e-04  1
BZ293265|BZ293265.1 CG0237.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0237, DNA sequence.    46  2e-04  3
BZ294292|BZ294292.1 CG0814.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0814, DNA sequence.    46  2e-04  3
BZ295534|BZ295534.1 CG1537.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG1537, DNA sequence.    46  2e-04  3
BG543772|BG543772.1 E1465 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E1465, mRNA sequence.    40  0.008  2
CD827431|CD827431.1 BN25.067H03F020122 BN25 Brassica napus cDNA clone BN25067H03, mRNA sequence.    40  0.009  2
BU041769|BU041769.1 PP_LEa0010G24f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0010G24f, mRNA sequence.    52  0.010  1
BU042820|BU042820.1 PP_LEa0014B11f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014B11f, mRNA sequence.    52  0.010  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XB5) RecName: Full=60S ribosomal protein L31;                     211   2e-53
EF062489_1(EF062489|pid:none) Artemia franciscana clone 1JM23.05...   142   1e-32
(Q7KF90) RecName: Full=60S ribosomal protein L31;  &(Q9GP16) Rec...   140   3e-32
DQ213101_1(DQ213101|pid:none) Taeniopygia guttata clone 0058P001...   140   5e-32
BT046479_1(BT046479|pid:none) Salmo salar clone ssal-evd-510-200...   139   8e-32
(Q90YT7) RecName: Full=60S ribosomal protein L31;  &AF401586_1(A...   139   1e-31
BT058251_1(BT058251|pid:none) Salmo salar clone Contig2813 60S r...   138   2e-31
EU139229_1(EU139229|pid:none) Flustra foliacea putative 60S ribo...   138   2e-31
DQ892609_1(DQ892609|pid:none) Synthetic construct clone IMAGE:10...   137   2e-31
X69181_1(X69181|pid:none) H.sapiens mRNA for ribosomal protein L...   137   2e-31
protein update 2009. 3.26
PSORT 

 psg: 0.78  gvh: 0.29  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for VSK338 is cyt
5' end seq. ID VSK338F
5' end seq. 
>VSK338F.Seq
GCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAG
GATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACC
AAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAAC
GTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACT
GAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACC
AAAAAAGTTGCTGACAACTAAATGGTTTAATTAAAATAAATTTTTTAATATATTTTAAAA
AAAAAA----------
Length of 5' end seq. 366
3' end seq. ID VSK338Z
3' end seq. 
>VSK338Z.Seq
----------GCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTACGGAAC
TACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGAT
CATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGG
TATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGA
AAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGG
TCTCCAAACCAAAAAAGTTGCTGACAACTAAAGGTTTAATTAAAATAANTTTTTAA
Length of 3' end seq. 346
Connected seq. ID VSK338P
Connected seq. 
>VSK338P.Seq
GCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAG
GATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACC
AAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAAC
GTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACT
GAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACC
AAAAAAGTTGCTGACAACTAAATGGTTTAATTAAAATAAATTTTTTAATATATTTTAAAA
AAAAAA----------GCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTA
CGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCA
AAAGATCATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAG
CCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGA
AGATGAAAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTT
CAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTAAAGGTTTAATTAAAATAANTTTTT
AA
Length of connected seq. 712
Full length Seq ID -
Full length Seq. -
Length of full length seq. -