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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK313
Library VS
(Link to library)
Clone ID VSK313
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07093-1
Original site URL
Representative seq. ID VSK313P
(Link to Original site)
Representative DNA sequence 
>VSK313 (VSK313Q) /CSM/VS/VSK3-A/VSK313Q.Seq.d/
AAGTGGATTTTCAAACAACAATTCAAATAATGGTATAAACAATGGAATGAATAATAATAA
TAATAGTAATAATAATAACAATAATAACTCATTTTATCAAAATAATATGCTTCAAGGATT
TCCAAGTAAATTACCAATGTCAATGGAACAACAACAAAATTCTTTATTAAACAATTCTGG
TAATATTACACCAAATATTGTACAATATAATAATAACAATAATAATAATAATAATAATGG
TATAATTCCAGCAATTAGTAACGAATCAAAAGCTCAATATATAAATGTATTTTATAAAAT
TGGAGCTAGTGATGGCAGTAAATTATCTGGTTTAGTTGCAAAACCAATTTTCCAAAAATC
TGGTTTATCAAATGATAGTTTATCACTTGTTTGGAGTTTGGCAGATATCGACAAAGATGG
TCATTTGGATAGAGAAGAGTTTTGTTTAGCAATGCATTTAATTTACGCAATTAAAAATGG
TATATCATTACCATTCAGAGTTACCAAAACATTTTAGTTCCTGATACAAAAACTATTTAT
AATATTTCATCACCAACAACTATGAATGATTGGCXXXXXXXXXXTATTTTTTNCCCCCCC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTNANAAAGTTATTTAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
kwifkqqfk*wykqwne*********q**lilsk*yasrisk*itnvngtttkffikqfw
*yytkycti***q******wynssn**rikssiykcil*nws**wq*iiwfscktnfpki
wfik**fitclefgryrqrwsfg*rrvlfsnafnlrn*KWYIITIQSYQNILVPDTKTIY
NISSPTTMNDW---

---YFXPPLFFFFFFFFFFFFFSXXSYL
Translated Amino Acid sequence (All Frames) 
Frame A:
kwifkqqfk*wykqwne*********q**lilsk*yasrisk*itnvngtttkffikqfw
*yytkycti***q******wynssn**rikssiykcil*nws**wq*iiwfscktnfpki
wfik**fitclefgryrqrwsfg*rrvlfsnafnlrn*KWYIITIQSYQNILVPDTKTIY
NISSPTTMNDW---

---YFXPPLFFFFFFFFFFFFFSXXSYL

Frame B:
sgfsnnnsnnginngmnnnnnsnnnnnnnsfyqnnmlqgfpsklpmsmeqqqnsllnnsg
nitpnivqynnnnnnnnnngiipaisneskaqyinvfykigasdgsklsglvakpifqks
glsndslslvwsladidkdghldreefclamhliyaikngislpfrvtktf*fliqklfi
ifhhqql*mig---

---ifxppfffffffffffffflxkviy

Frame C:
vdfqttiqimv*tme*iiiiiviiitiithfikiicfkdfqvnyqcqwnnnkily*tilv
ilhqilyniiitiiiiiimv*fqqlvtnqklni*myfiklelvmavnylv*lqnqfsknl
vyqmivyhlfgvwqistkmviwieksfv*qci*ftqlkmvyhyhselpkhfss*yknyl*
yfitnnye*l---

---ffxppffffffffffffffxxklf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK313 (VSK313Q) /CSM/VS/VSK3-A/VSK313Q.Seq.d/                        666   0.0
AHI591 (AHI591Q) /CSM/AH/AHI5-D/AHI591Q.Seq.d/                         42   0.011
SLH727 (SLH727Q) /CSM/SL/SLH7-B/SLH727Q.Seq.d/                         40   0.042
AFO303 (AFO303Q) /CSM/AF/AFO3-A/AFO303Q.Seq.d/                         40   0.042
SSM617 (SSM617Q) /CSM/SS/SSM6-A/SSM617Q.Seq.d/                         36   0.65
VSD319 (VSD319Q) /CSM/VS/VSD3-A/VSD319Q.Seq.d/                         34   2.6
VSB358 (VSB358Q) /CSM/VS/VSB3-C/VSB358Q.Seq.d/                         34   2.6
VHP393 (VHP393Q) /CSM/VH/VHP3-D/VHP393Q.Seq.d/                         34   2.6
VHD467 (VHD467Q) /CSM/VH/VHD4-C/VHD467Q.Seq.d/                         34   2.6
VHC887 (VHC887Q) /CSM/VH/VHC8-D/VHC887Q.Seq.d/                         34   2.6
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC141595|AC141595.1 Homo sapiens chromosome 5 clone RP11-1299M21, WORKING DRAFT SEQUENCE, 17 unordered pieces.    44  0.061  5
AC015600|AC015600.8 Homo sapiens chromosome 11, clone RP11-45C5, complete sequence.    38  0.10  6
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    32  0.15  8
AJ277590|AJ277590.1 Dictyostelium discoideum iplA gene for inositol 1,4,5-trisphosphate receptor-like protein (IplA), exons 1-4.    42  0.21  3
AC132953|AC132953.1 Mus musculus chromosome UNK clone RP24-202D5, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.46  2
BH920140|BH920140.1 odh70b04.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.54  1
AC136223|AC136223.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24, *** SEQUENCING IN PROGRESS ***, 11 ordered pieces.    40  0.58  5
AL184959|AL184959.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  243I12 of library G from Tetraodon nigroviridis.    34  0.59  2
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36  0.65  7
U78642|U78642.1 Polyorchis penicillatus potassium channel alpha subunit (jShal-alpha-1) mRNA, complete cds.    36  0.98  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK147418_1(AK147418|pid:none) Mus musculus adult male brain UNDE...    72   2e-11
AL672039_1(AL672039|pid:none) Mouse DNA sequence from clone RP23...    72   2e-11
BC139012_1(BC139012|pid:none) Mus musculus RALBP1 associated Eps...    72   2e-11
AL672039_2(AL672039|pid:none) Mouse DNA sequence from clone RP23...    72   2e-11
(Q80XA6) RecName: Full=RalBP1-associated Eps domain-containing p...    72   2e-11
AF511533_1(AF511533|pid:none) Homo sapiens RALBP1 associated Eps...    71   2e-11
(Q8NFH8) RecName: Full=RalBP1-associated Eps domain-containing p...    71   2e-11
AF010233_1(AF010233|pid:none) Homo sapiens RalBP1-interacting pr...    71   2e-11
BC066703_1(BC066703|pid:none) Danio rerio zgc:77049, mRNA (cDNA ...    69   9e-11
(B2AS96) RecName: Full=Actin cytoskeleton-regulatory complex pro...    69   9e-11
protein update 2009. 3.26
PSORT 

 psg: 0.84  gvh: 0.65  alm: 0.25  top: 0.53  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.51  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSK313 is end
5' end seq. ID VSK313F
5' end seq. 
>VSK313F.Seq
AAGTGGATTTTCAAACAACAATTCAAATAATGGTATAAACAATGGAATGAATAATAATAA
TAATAGTAATAATAATAACAATAATAACTCATTTTATCAAAATAATATGCTTCAAGGATT
TCCAAGTAAATTACCAATGTCAATGGAACAACAACAAAATTCTTTATTAAACAATTCTGG
TAATATTACACCAAATATTGTACAATATAATAATAACAATAATAATAATAATAATAATGG
TATAATTCCAGCAATTAGTAACGAATCAAAAGCTCAATATATAAATGTATTTTATAAAAT
TGGAGCTAGTGATGGCAGTAAATTATCTGGTTTAGTTGCAAAACCAATTTTCCAAAAATC
TGGTTTATCAAATGATAGTTTATCACTTGTTTGGAGTTTGGCAGATATCGACAAAGATGG
TCATTTGGATAGAGAAGAGTTTTGTTTAGCAATGCATTTAATTTACGCAATTAAAAATGG
TATATCATTACCATTCAGAGTTACCAAAACATTTTAGTTCCTGATACAAAAACTATTTAT
AATATTTCATCACCAACAACTATGAATGATTGGC----------
Length of 5' end seq. 574
3' end seq. ID VSK313Z
3' end seq. 
>VSK313Z.Seq
----------TATTTTTTNCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCTTNANAAAGTTATTTAT
Length of 3' end seq. 76
Connected seq. ID VSK313P
Connected seq. 
>VSK313P.Seq
AAGTGGATTTTCAAACAACAATTCAAATAATGGTATAAACAATGGAATGAATAATAATAA
TAATAGTAATAATAATAACAATAATAACTCATTTTATCAAAATAATATGCTTCAAGGATT
TCCAAGTAAATTACCAATGTCAATGGAACAACAACAAAATTCTTTATTAAACAATTCTGG
TAATATTACACCAAATATTGTACAATATAATAATAACAATAATAATAATAATAATAATGG
TATAATTCCAGCAATTAGTAACGAATCAAAAGCTCAATATATAAATGTATTTTATAAAAT
TGGAGCTAGTGATGGCAGTAAATTATCTGGTTTAGTTGCAAAACCAATTTTCCAAAAATC
TGGTTTATCAAATGATAGTTTATCACTTGTTTGGAGTTTGGCAGATATCGACAAAGATGG
TCATTTGGATAGAGAAGAGTTTTGTTTAGCAATGCATTTAATTTACGCAATTAAAAATGG
TATATCATTACCATTCAGAGTTACCAAAACATTTTAGTTCCTGATACAAAAACTATTTAT
AATATTTCATCACCAACAACTATGAATGATTGGC----------TATTTTTTNCCCCCCC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTNANAAAGTTATTTAT
Length of connected seq. 650
Full length Seq ID -
Full length Seq. -
Length of full length seq. -