VSK290
Library VS
(Link to library)
Clone ID VSK290
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID VSK290F
(Link to Original site)
Representative DNA sequence
>VSK290 (VSK290Q) /CSM/VS/VSK2-D/VSK290Q.Seq.d/
TACTCTCTAATATAATGGTTATTTTTATTAATTTAGTTTTCTTCTTCACCTTTTGATGAG
TTGTTCTTGGCCATTTTACGGGCACGACGACCTGGACGACCACCAGCTAATGGGGAGGTT
GAAGCTAAACCTAAGTGCTTTTGGGATTCAACACGGACGAGGAAAGATGGAACGTTGACT
AATTGTTTACCAACACGGATGTGTCTACCTTTGATTAAAACACGAGCGTGATGGATTGAT
TTGGCAAGACCATTTTTGAAGACTAAAGTTTGGAGACGTCTTTCCATGAAATCTTGAACT
TTAAGATTAAGAATATAATCGAGTTTGTTCTTTGATTCTTCCATGACACCTAATTTGTGG
AGTCTACGGAGGAGAGCTGAACCTTCAAAGATACGTTTTGGGTCTTTTTCATCAAGAACG
AGGAGTTCTCTAGCAGCCTTTCTGATTTTGGCTAAAGCGTATTGGACTCTCCATACTTCG
TTTTTGTTCTTTAAACCAAATTCACCGACAACTTTTAATTCAGCGTCGATTCTTXXXXXX
XXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
ysli*wlflli*fssspfdelflailrarrpgrppangeveakpkcfwdstrtrkdgtlt
nclptrmclpliktra*widlarpflktkvwrrlsmks*tlrlri*SSLFFDSSMTPNLW
SLRRRAEPSKIRFGSFSSRTRSSLAAFLILAKAYWTLHTSFLFFKPNSPTTFNSASI---


Translated Amino Acid sequence (All Frames)
Frame A:
ysli*wlflli*fssspfdelflailrarrpgrppangeveakpkcfwdstrtrkdgtlt
nclptrmclpliktra*widlarpflktkvwrrlsmks*tlrlri*SSLFFDSSMTPNLW
SLRRRAEPSKIRFGSFSSRTRSSLAAFLILAKAYWTLHTSFLFFKPNSPTTFNSASI---


Frame B:
tl*yngyfy*fsfllhllmscswpfyghddlddhqlmgrlklnlsafgiqhgrgkmer*l
ivyqhgcvyl*lkherdgliwqdhf*rlkfgdvfp*nlel*d*eynrvcslilp*hlicg
vyggelnlqryvlglfhqergvl*qpf*fwlkriglsilrfcslnqihrqlliqrrf---


Frame C:
lsnimvifinlvffftf**vvlghftgtttwttts*wgg*s*t*vllgfntdeerwnvd*
lftntdvstfd*ntsvmd*fgktifed*sletsfheilnfkikniiefvl*ffhdt*fve
stees*tfkdtfwvffikneefssslsdfg*svldspyfvfvl*tkftdnf*fsvds---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK290 (VSK290Q) /CSM/VS/VSK2-D/VSK290Q.Seq.d/ 1059 0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/ 1059 0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/ 1059 0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/ 1059 0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/ 1053 0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/ 1047 0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/ 1041 0.0
VSD823 (VSD823Q) /CSM/VS/VSD8-A/VSD823Q.Seq.d/ 1033 0.0
VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/ 1033 0.0
VSI708 (VSI708Q) /CSM/VS/VSI7-A/VSI708Q.Seq.d/ 1019 0.0

own update 2003. 1.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024. 1059 0.0 1
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene. 779 0.0 1
AL113229|AL113229.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL111854|AL111854.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL111255|AL111255.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 5e-14 2
AL116832|AL116832.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 6e-14 2
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 6e-14 2
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 6e-14 2
AL115920|AL115920.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 6e-14 2
AL115016|AL115016.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 6e-14 2
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4... 278 8e-74
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 216 3e-55
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045... 215 6e-55
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl... 214 8e-55
AM920435_274(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 213 2e-54
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch... 212 4e-54
AY961563_1(AY961563|pid:none) Lysiphlebus testaceipes ribosomal ... 212 5e-54
AY392170_1(AY392170|pid:none) Scyliorhinus canicula ribosomal pr... 211 7e-54
(Q9LXG1) RecName: Full=40S ribosomal protein S9-1; &AK228437_1(... 211 7e-54
BT043959_1(BT043959|pid:none) Salmo salar clone HM5_0638 ribosom... 211 9e-54
protein update 2009. 3.26
PSORT

psg: 0.75 gvh: 0.51 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VSK290 is nuc

5' end seq. ID VSK290F
5' end seq.
>VSK290F.Seq
TACTCTCTAATATAATGGTTATTTTTATTAATTTAGTTTTCTTCTTCACCTTTTGATGAG
TTGTTCTTGGCCATTTTACGGGCACGACGACCTGGACGACCACCAGCTAATGGGGAGGTT
GAAGCTAAACCTAAGTGCTTTTGGGATTCAACACGGACGAGGAAAGATGGAACGTTGACT
AATTGTTTACCAACACGGATGTGTCTACCTTTGATTAAAACACGAGCGTGATGGATTGAT
TTGGCAAGACCATTTTTGAAGACTAAAGTTTGGAGACGTCTTTCCATGAAATCTTGAACT
TTAAGATTAAGAATATAATCGAGTTTGTTCTTTGATTCTTCCATGACACCTAATTTGTGG
AGTCTACGGAGGAGAGCTGAACCTTCAAAGATACGTTTTGGGTCTTTTTCATCAAGAACG
AGGAGTTCTCTAGCAGCCTTTCTGATTTTGGCTAAAGCGTATTGGACTCTCCATACTTCG
TTTTTGTTCTTTAAACCAAATTCACCGACAACTTTTAATTCAGCGTCGATTCTT------
----
Length of 5' end seq. 534
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -