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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK288
Library VS
(Link to library)
Clone ID VSK288
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID VSK288P
(Link to Original site)
Representative DNA sequence 
>VSK288 (VSK288Q) /CSM/VS/VSK2-D/VSK288Q.Seq.d/
GCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGGT
GATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGTT
ACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCGT
GACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCAC
CCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTT
GTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCA
TCATTTGCTTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTT
GCTATCAATTTTTTGGAATATTGTTATATTATTATAATAAAATAAATTTTAAAAAAAATC
TTCAAXXXXXXXXXXGGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGT
TAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTNGTCCTTGCCAACT
CACCCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATG
AAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTA
GAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGT
AAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTC
TCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTA
AGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGAT
GATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATT
TAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTGTTATATTATTATAATAAAAT
AAATTTAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
*tr*scq*ritqts*rcig**s*kgsslnsscqltmcfsyl*iwlvskhgtyhessssp*
lfnviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrflir*tii
icfhvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrfny*PFC
YQFFGILLYYYNKINFKKNLQ---

---AEQDKAANEELLKQVKDVLGDKVEKVVLSTXPCQLTHVF*lplnmvgqqtwnvs*kl
klsvtlqchhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvsh*
mnhhhllhvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrfny
*pfcyqffgillyyynkinlk
Translated Amino Acid sequence (All Frames) 
Frame A:
aeqdkaaneellkqvkdvlgdkvekvvlstrlanspcvlvtseygwsanmerimkaqalr
dssmssymsskktlelnpdhpivrdlakkaaeksktfkdfvyllyetalltsgfsldeps
sfaftyssyd*irfkhsr*fisnn*rinkhnnq**ystirrkr*ti*ngksrldlitspf
ainfleycyiiiik*ilkkif---

---g*tr*scq*ritqts*rcig**s*kgsslnxslpthpcvlvtseygwsanmerimka
qalrdssmssymsskktlelnpdhpivrdlakkaaeksktfkdfvyllyetalltsgfsl
depssfasrihrmiklglsiqddssatteestntttsddippleendepsemekvd*i*l
lalllsifwnivill**nkfkk

Frame B:
lnkiklpmknysnklkmywviklkr*fsqlvlpthhvf*lplnmvgqqtwnvs*klklsv
tlqchhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvsh*mnhh
hllsrihrmiklglsiqddssatteestntttsddippleendepsemekvd*i*llall
lsifwnivill**nkf*kkss---

---AEQDKAANEELLKQVKDVLGDKVEKVVLSTXPCQLTHVF*lplnmvgqqtwnvs*kl
klsvtlqchhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvsh*
mnhhhllhvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrfny
*pfcyqffgillyyynkinlk

Frame C:
*tr*scq*ritqts*rcig**s*kgsslnsscqltmcfsyl*iwlvskhgtyhessssp*
lfnviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrflir*tii
icfhvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrfny*PFC
YQFFGILLYYYNKINFKKNLQ---

---lnkiklpmknysnklkmywviklkr*fsqlvlanspmcfsyl*iwlvskhgtyhess
ssp*lfnviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrflir
*tiiicftyssyd*irfkhsr*fisnn*rinkhnnq**ystirrkr*ti*ngksrldlit
spfainfleycyiiiik*i*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK288 (VSK288Q) /CSM/VS/VSK2-D/VSK288Q.Seq.d/                        611   e-173
CHP128 (CHP128Q) /CSM/CH/CHP1-B/CHP128Q.Seq.d/                        611   e-173
VSA716 (VSA716Q) /CSM/VS/VSA7-A/VSA716Q.Seq.d/                        603   e-171
VHP779 (VHP779Q) /CSM/VH/VHP7-D/VHP779Q.Seq.d/                        603   e-171
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/                        603   e-171
VHO658 (VHO658Q) /CSM/VH/VHO6-C/VHO658Q.Seq.d/                        603   e-171
VHO403 (VHO403Q) /CSM/VH/VHO4-A/VHO403Q.Seq.d/                        603   e-171
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/                        603   e-171
VHI392 (VHI392Q) /CSM/VH/VHI3-D/VHI392Q.Seq.d/                        603   e-171
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/                        603   e-171
own update 2004. 5.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   517  0.0  4
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.    82  3e-19  3
AL113572|AL113572.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90  2e-14  2
AL110635|AL110635.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90  2e-14  2
AL114542|AL114542.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90  2e-14  2
AL114332|AL114332.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90  2e-14  2
CB366760|CB366760.1 O1016 ookinete library Plasmodium berghei cDNA clone O1016 similar to heat shock protein 86, mRNA sequence.    72  6e-14  3
CB366759|CB366759.1 O1014 ookinete library Plasmodium berghei cDNA clone O1014 similar to heat shock protein 86, mRNA sequence.    72  7e-14  3
BG467431|BG467431.1 EST35 Pacific oyster Lambda Zap Express gill cDNA library Crassostrea gigas cDNA 5' similar to Heat shock protein 90, mRNA sequence.    80  7e-14  2
CB366758|CB366758.1 O1043 ookinete library Plasmodium berghei cDNA clone O1043 similar to heat shock protein 86, mRNA sequence.    72  7e-14  3
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             220   1e-66
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   220   1e-66
DQ884433_1(DQ884433|pid:none) Karlodinium micrum clone Kmi-5p-cD...   151   5e-39
DQ062086_1(DQ062086|pid:none) Pseudourostyla cristata heat shock...   154   6e-39
AB092411_1(AB092411|pid:none) Entamoeba histolytica gene for cyt...   158   8e-39
AY831450_1(AY831450|pid:none) Monocercomonoides sp. PA203 heat s...   149   1e-38
AM423851_1(AM423851|pid:none) Vitis vinifera contig VV78X192584....   148   5e-38
AY292370_1(AY292370|pid:none) Toxoplasma gondii HSP90 mRNA, comp...   149   7e-38
AF402101_1(AF402101|pid:none) Achlya ambisexualis isolate JS855 ...   151   7e-38
AF402100_1(AF402100|pid:none) Achlya ambisexualis isolate JS854 ...   151   7e-38
protein update 2009. 3.26
PSORT 

 psg: 0.92  gvh: 0.33  alm: 0.50  top: 0.60  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSK288 is cyt
5' end seq. ID VSK288F
5' end seq. 
>VSK288F.Seq
GCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGGT
GATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGTT
ACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCGT
GACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCAC
CCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTT
GTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCA
TCATTTGCTTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTT
GCTATCAATTTTTTGGAATATTGTTATATTATTATAATAAAATAAATTTTAAAAAAAATC
TTCAA----------
Length of 5' end seq. 605
3' end seq. ID VSK288Z
3' end seq. 
>VSK288Z.Seq
----------GGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAG
ATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTNGTCCTTGCCAACTCACCC
ATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGC
TCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATT
AAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAAC
TTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATT
AGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCAT
TCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATAT
TCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATT
ACTAGCCCTTTTGCTATCAATTTTTTGGAATATTGTTATATTATTATAATAAAATAAATT
TAAAAAA
Length of 3' end seq. 597
Connected seq. ID VSK288P
Connected seq. 
>VSK288P.Seq
GCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGGT
GATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGTT
ACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCGT
GACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCAC
CCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTT
GTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCA
TCATTTGCTTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTT
GCTATCAATTTTTTGGAATATTGTTATATTATTATAATAAAATAAATTTTAAAAAAAATC
TTCAA----------GGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGT
TAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTNGTCCTTGCCAACT
CACCCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATG
AAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTA
GAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGT
AAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTC
TCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTA
AGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGAT
GATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATT
TAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTGTTATATTATTATAATAAAAT
AAATTTAAAAAA
Length of connected seq. 1202
Full length Seq ID -
Full length Seq. -
Length of full length seq. -