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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK269
Library VS
(Link to library)
Clone ID VSK269
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01687-1
Original site URL
Representative seq. ID VSK269P
(Link to Original site)
Representative DNA sequence 
>VSK269 (VSK269Q) /CSM/VS/VSK2-C/VSK269Q.Seq.d/
ACAAAAACAATTATTACAATTACAACAACAATTATCAAATAATAATAATAACAGTAATAA
TAACAGTAATAATATCAATAATAATAATAGTAATAGTAATAATGTAAATATTTCACCACC
TCCATCACCACCAAAATTAATATCAAATCCACCATCTTCAAAGAGAAAGAAACAATCTTT
TACACCAAATGGAAGATATTCTTCAGGTACTTCAAATACAACAACTGTTAATAGTGGTTA
TAGTAGATATACAAATGATGAATTATTTGATAATCATGATGATGAATTTGAGCCACGATT
ATTTTATAATTCAAATAATAATAATAATACTACTACTACTACTAGTACTACTACCTCTTC
AAATACTAAAAAACAACAACAACAACAACAAACTTCTCATTCATCATTTGAACCATTTTT
AAAGAAATTAAAAGAGAATCAATTATTGAAAAGGGAGAAATCCTCTGAAAAAAGTTTAGA
TAAAGTTTTAAAAAAAGAAAAATCTACTGATAAAAATTTAGATAAATCATCATCATTAAA
AAAAGAAAAGTCTGATAGAATATTAAAAAAAAAAXXXXXXXXXXACAAAAACAATTATTA
CAATTACAACAACAATTATCAAATAATAATAATAACAGTAATAATAACAGTAATAATATC
AATAATAATAATAGTAATAGTAATAATGTAAATATTTCACCACCTCCATCACCACCAAAA
TTAATATCAAATCCACCATCTTCAAAGAGAAAGAAACAATCTTTTACACCAAATGGAAGA
TATTCTTCAGGTACTTCAAATACAACAACTGTTAATAGTGGTTATAGTAGATATACAAAT
GATGAATTATTTGATAATCATGATGATGAATTTGAGCCACGATTATTTTATAATTCAAAT
AATAATAATAATACTACTACTACTACTAGTACTACTACCTCTTCAAATACTAAAAAACAA
CAACAACAACAACAAACTTCTCATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAG
AATCAATTATTGAAAAGGGAGAAATCCTCTGAAAAAAGTTTAGATTAAAGTTTTAAAAAA
AGAAAAATCTACTGATAAAAATTTAGATAAATCATCATCATTAAAAAAAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
QKQLLQLQQQLSNNNNNSNNNSNNINNNNSNSNNVNISPPPSPPKLISNPPSSKRKKQSF
TPNGRYSSGTSNTTTVNSGYSRYTNDELFDNHDDEFEPRLFYNSNNNNNTTTTTSTTTSS
NTKKQQQQQQTSHSSFEPFLKKLKENQLLKREKSSEKSLDKVLKKEKSTDKNLDKSSSLK
KEKSDRILKKK---

---QKQLLQLQQQLSNNNNNSNNNSNNINNNNSNSNNVNISPPPSPPKLISNPPSSKRKK
QSFTPNGRYSSGTSNTTTVNSGYSRYTNDELFDNHDDEFEPRLFYNSNNNNNTTTTTSTT
TSSNTKKQQQQQQTSHSSFEPFLKKLKENQLLKREKSSEKSLD*sfkkrkiy**kfr*ii
iikk
Translated Amino Acid sequence (All Frames) 
Frame A:
tktiititttiik****q***q**yq********ckyfttsittkinikstifkeketif
ytkwkiffryfkynnc**wl**iyk**ii**s***i*atiil*fk****yyyyy*yyylf
ky*kttttttnfsfii*tifkeikresiiekgeil*kkfr*sfkkrkiy**kfr*iiiik
krkv**nikkk---

---tktiititttiik****q***q**yq********ckyfttsittkinikstifkeke
tifytkwkiffryfkynnc**wl**iyk**ii**s***i*atiil*fk****yyyyy*yy
ylfky*kttttttnfsfii*tifkeikresiiekgeil*kkfrlkf*kkknlliki*inh
hh*kk

Frame B:
QKQLLQLQQQLSNNNNNSNNNSNNINNNNSNSNNVNISPPPSPPKLISNPPSSKRKKQSF
TPNGRYSSGTSNTTTVNSGYSRYTNDELFDNHDDEFEPRLFYNSNNNNNTTTTTSTTTSS
NTKKQQQQQQTSHSSFEPFLKKLKENQLLKREKSSEKSLDKVLKKEKSTDKNLDKSSSLK
KEKSDRILKKK---

---QKQLLQLQQQLSNNNNNSNNNSNNINNNNSNSNNVNISPPPSPPKLISNPPSSKRKK
QSFTPNGRYSSGTSNTTTVNSGYSRYTNDELFDNHDDEFEPRLFYNSNNNNNTTTTTSTT
TSSNTKKQQQQQQTSHSSFEPFLKKLKENQLLKREKSSEKSLD*sfkkrkiy**kfr*ii
iikk

Frame C:
knnyynynnnyqiiiitviitviisiiiivivim*ifhhlhhhqn*yqihhlqrernnll
hqmedilqvlqiqqllivvivdiqmmnyliimmmnlshdyfiiqiiiiilllllvllplq
ilknnnnnnkllihhlnhf*rn*kriny*kgrnplkkv*ikf*kkknlliki*inhhh*k
kksliey*kk---

---knnyynynnnyqiiiitviitviisiiiivivim*ifhhlhhhqn*yqihhlqrern
nllhqmedilqvlqiqqllivvivdiqmmnyliimmmnlshdyfiiqiiiiilllllvll
plqilknnnnnnkllihhlnhf*rn*kriny*kgrnplkkv*ikvlkkekstdknldkss
slkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK269 (VSK269Q) /CSM/VS/VSK2-C/VSK269Q.Seq.d/                        430   e-119
SSE453 (SSE453Q) /CSM/SS/SSE4-C/SSE453Q.Seq.d/                        188   1e-46
VSE830 (VSE830Q) /CSM/VS/VSE8-B/VSE830Q.Seq.d/                        172   8e-42
VSD808 (VSD808Q) /CSM/VS/VSD8-A/VSD808Q.Seq.d/                        172   8e-42
SSG808 (SSG808Q) /CSM/SS/SSG8-A/SSG808Q.Seq.d/                         52   2e-05
VSG494 (VSG494Q) /CSM/VS/VSG4-D/VSG494Q.Seq.d/                         50   7e-05
AFL431 (AFL431Q) /CSM/AF/AFL4-B/AFL431Q.Seq.d/                         50   7e-05
VSD603 (VSD603Q) /CSM/VS/VSD6-A/VSD603Q.Seq.d/                         44   0.005
VSA415 (VSA415Q) /CSM/VS/VSA4-A/VSA415Q.Seq.d/                         44   0.005
VHN395 (VHN395Q) /CSM/VH/VHN3-D/VHN395Q.Seq.d/                         44   0.005
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    52  5e-08  7
AF361947|AF361947.1 Dictyostelium discoideum SgcA (sgcA) mRNA, complete cds.    42  3e-07  5
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    54  6e-07  4
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    38  2e-06  6
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44  3e-06  6
AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    38  2e-05  5
Z27493|Z27493.1 S.scrofa microsatellite DNA.                      42  4e-05  2
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    44  4e-05  7
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  4e-05  8
AJ224893|AJ224893.1 Dictyostelium discoideum srfA gene.           38  8e-05  4
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU494076_1(EU494076|pid:none) Scaptodrosophila lebanonensis vouc...    34   7.8
EU494077_1(EU494077|pid:none) Scaptodrosophila pattersoni vouche...    34   7.8
protein update 2009. 3.26
PSORT 

 psg: 0.70  gvh: 0.24  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.63  mip: 0.14
 nuc: 0.32  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for VSK269 is mit
5' end seq. ID VSK269F
5' end seq. 
>VSK269F.Seq
ACAAAAACAATTATTACAATTACAACAACAATTATCAAATAATAATAATAACAGTAATAA
TAACAGTAATAATATCAATAATAATAATAGTAATAGTAATAATGTAAATATTTCACCACC
TCCATCACCACCAAAATTAATATCAAATCCACCATCTTCAAAGAGAAAGAAACAATCTTT
TACACCAAATGGAAGATATTCTTCAGGTACTTCAAATACAACAACTGTTAATAGTGGTTA
TAGTAGATATACAAATGATGAATTATTTGATAATCATGATGATGAATTTGAGCCACGATT
ATTTTATAATTCAAATAATAATAATAATACTACTACTACTACTAGTACTACTACCTCTTC
AAATACTAAAAAACAACAACAACAACAACAAACTTCTCATTCATCATTTGAACCATTTTT
AAAGAAATTAAAAGAGAATCAATTATTGAAAAGGGAGAAATCCTCTGAAAAAAGTTTAGA
TAAAGTTTTAAAAAAAGAAAAATCTACTGATAAAAATTTAGATAAATCATCATCATTAAA
AAAAGAAAAGTCTGATAGAATATTAAAAAAAAAA----------
Length of 5' end seq. 574
3' end seq. ID VSK269Z
3' end seq. 
>VSK269Z.Seq
----------ACAAAAACAATTATTACAATTACAACAACAATTATCAAATAATAATAATA
ACAGTAATAATAACAGTAATAATATCAATAATAATAATAGTAATAGTAATAATGTAAATA
TTTCACCACCTCCATCACCACCAAAATTAATATCAAATCCACCATCTTCAAAGAGAAAGA
AACAATCTTTTACACCAAATGGAAGATATTCTTCAGGTACTTCAAATACAACAACTGTTA
ATAGTGGTTATAGTAGATATACAAATGATGAATTATTTGATAATCATGATGATGAATTTG
AGCCACGATTATTTTATAATTCAAATAATAATAATAATACTACTACTACTACTAGTACTA
CTACCTCTTCAAATACTAAAAAACAACAACAACAACAACAAACTTCTCATTCATCATTTG
AACCATTTTTAAAGAAATTAAAAGAGAATCAATTATTGAAAAGGGAGAAATCCTCTGAAA
AAAGTTTAGATTAAAGTTTTAAAAAAAGAAAAATCTACTGATAAAAATTTAGATAAATCA
TCATCATTAAAAAAAG
Length of 3' end seq. 546
Connected seq. ID VSK269P
Connected seq. 
>VSK269P.Seq
ACAAAAACAATTATTACAATTACAACAACAATTATCAAATAATAATAATAACAGTAATAA
TAACAGTAATAATATCAATAATAATAATAGTAATAGTAATAATGTAAATATTTCACCACC
TCCATCACCACCAAAATTAATATCAAATCCACCATCTTCAAAGAGAAAGAAACAATCTTT
TACACCAAATGGAAGATATTCTTCAGGTACTTCAAATACAACAACTGTTAATAGTGGTTA
TAGTAGATATACAAATGATGAATTATTTGATAATCATGATGATGAATTTGAGCCACGATT
ATTTTATAATTCAAATAATAATAATAATACTACTACTACTACTAGTACTACTACCTCTTC
AAATACTAAAAAACAACAACAACAACAACAAACTTCTCATTCATCATTTGAACCATTTTT
AAAGAAATTAAAAGAGAATCAATTATTGAAAAGGGAGAAATCCTCTGAAAAAAGTTTAGA
TAAAGTTTTAAAAAAAGAAAAATCTACTGATAAAAATTTAGATAAATCATCATCATTAAA
AAAAGAAAAGTCTGATAGAATATTAAAAAAAAAA----------ACAAAAACAATTATTA
CAATTACAACAACAATTATCAAATAATAATAATAACAGTAATAATAACAGTAATAATATC
AATAATAATAATAGTAATAGTAATAATGTAAATATTTCACCACCTCCATCACCACCAAAA
TTAATATCAAATCCACCATCTTCAAAGAGAAAGAAACAATCTTTTACACCAAATGGAAGA
TATTCTTCAGGTACTTCAAATACAACAACTGTTAATAGTGGTTATAGTAGATATACAAAT
GATGAATTATTTGATAATCATGATGATGAATTTGAGCCACGATTATTTTATAATTCAAAT
AATAATAATAATACTACTACTACTACTAGTACTACTACCTCTTCAAATACTAAAAAACAA
CAACAACAACAACAAACTTCTCATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAG
AATCAATTATTGAAAAGGGAGAAATCCTCTGAAAAAAGTTTAGATTAAAGTTTTAAAAAA
AGAAAAATCTACTGATAAAAATTTAGATAAATCATCATCATTAAAAAAAG
Length of connected seq. 1120
Full length Seq ID -
Full length Seq. -
Length of full length seq. -