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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK267
Library VS
(Link to library)
Clone ID VSK267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID VSK267P
(Link to Original site)
Representative DNA sequence 
>VSK267 (VSK267Q) /CSM/VS/VSK2-C/VSK267Q.Seq.d/
GTCTTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTA
CCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATATGATGCAGAATGG
GCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAA
GGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTC
ATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATG
GATAAACAACCACCACTCACTGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTC
ATCAAGAATAACAAACTCTATGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCT
TCAATCTCTGCAATCAAAGCATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATT
ATCATTGAAGGTTCCGAAGAATCTGGTTCAATCCATTTACCACAATATGTTGAGAAGTTC
CAAGCTGAAATTCAAATTCXXXXXXXXXXGATAAATGTGCTTCAGGTTGGGATTCACCAC
AAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAG
ACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTT
TCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAA
ATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAG
ATGCTCATTCCAAGTTTGATTAAATAAATAAACCTTTATTTCATTATATCTTTAAAATCA
TTTTATTATTTTATTATTATTTTTATTTTAAATTTATTTAATAATTTAATATATTAATGG
AAATCCAATTCACTATTTCCAATTAATAATGAAGGTTTAAACAAATTCAACAAATTTTAA
CACAAACACAATATCTAATTTTTTTTTAAGTATTTTAACATTNCTAATAAATAATAAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
VLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQLLEKWILAQ
GIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDEGLHPYKAV
IKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSIHLPQYVEKF
QAEIQI---

---DKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIV
TGLLGPGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHSKFD*inkplfhyifkiillfyyy
fyfkfi**fnilmeiqftisn***rfkqiqqiltqtqyliff*vf*hx**iin
Translated Amino Acid sequence (All Frames) 
Frame A:
VLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQLLEKWILAQ
GIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDEGLHPYKAV
IKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSIHLPQYVEKF
QAEIQI---

---DKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIV
TGLLGPGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHSKFD*inkplfhyifkiillfyyy
fyfkfi**fnilmeiqftisn***rfkqiqqiltqtqyliff*vf*hx**iin

Frame B:
s*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkkqfny*rngs*hk
vskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslmhgmkdyihtkqs
sritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpknlvqsiyhnmlrss
klkfkf---

---invlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsl
lvy*vqvqmlmvqmns*ifhlprny*vvlfiy*mlipslik*inlyfiislksfyyfiii
filnlfnnliy*wksnslfpinneglnkfnkf*hkhni*fffkyfnixnk**i

Frame C:
lky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrrsnsiiremdlstr
yqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*cmg*ritsiqssh
qe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrriwfnpfttic*evp
s*nsn---

---*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyry
wfirsrfkcswsk*ilrysicqeiiklcylfircsfqv*lnk*tfislyl*nhfiilllf
lf*iylii*yingnpihyfqlimkv*tnstnfntntisnfflsiltxlinnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK267 (VSK267Q) /CSM/VS/VSK2-C/VSK267Q.Seq.d/                       1671   0.0
VFB402 (VFB402Q) /CSM/VF/VFB4-A/VFB402Q.Seq.d/                       1108   0.0
VFO152 (VFO152Q) /CSM/VF/VFO1-C/VFO152Q.Seq.d/                       1102   0.0
VFN570 (VFN570Q) /CSM/VF/VFN5-C/VFN570Q.Seq.d/                       1102   0.0
VFN247 (VFN247Q) /CSM/VF/VFN2-B/VFN247Q.Seq.d/                       1102   0.0
VFK163 (VFK163Q) /CSM/VF/VFK1-C/VFK163Q.Seq.d/                       1102   0.0
VFC720 (VFC720Q) /CSM/VF/VFC7-A/VFC720Q.Seq.d/                       1102   0.0
VFB134 (VFB134Q) /CSM/VF/VFB1-B/VFB134Q.Seq.d/                       1102   0.0
SFK118 (SFK118Q) /CSM/SF/SFK1-A/SFK118Q.Seq.d/                       1102   0.0
SFI811 (SFI811Q) /CSM/SF/SFI8-A/SFI811Q.Seq.d/                       1102   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC135162|AC135162.14 Medicago truncatula clone mth2-9b6, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  0.004  6
AC007434|AC007434.8 Homo sapiens, clone RP11-17A8, complete sequence.    38  0.009  8
AL354810|AL354810.8 Human DNA sequence from clone RP11-527N12 on chromosome 13.    38  0.047  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36  0.083  7
AL590867|AL590867.10 Human DNA sequence from clone RP11-475C16 on chromosome 6.    34  0.10  7
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32  0.19  10
BI435853|BI435853.1 EST538614 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence.    48  0.23  1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence.    48  0.23  1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence.    48  0.23  1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence.    48  0.23  1
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384330_1(DQ384330|pid:none) Hartmannella vermiformis succinyl-...   195   2e-48
DQ384331_1(DQ384331|pid:none) Physarum polycephalum succinyl-dia...   186   1e-45
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55...   175   3e-42
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2...   175   3e-42
AE011937_4(AE011937|pid:none) Xanthomonas axonopodis pv. citri s...   174   5e-42
AM502249_240(AM502249|pid:none) Leishmania infantum chromosome 31.    170   9e-41
CT005268_204(CT005268|pid:none) Leishmania major strain Friedlin...   168   3e-40
CT005270_197(CT005270|pid:none) Leishmania major strain Friedlin...   165   2e-39
AM502249_238(AM502249|pid:none) Leishmania infantum chromosome 31.    162   2e-38
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   162   2e-38
protein update 2009. 3.26
PSORT 

 psg: 0.51  gvh: 0.52  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSK267 is cyt
5' end seq. ID VSK267F
5' end seq. 
>VSK267F.Seq
GTCTTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTA
CCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATATGATGCAGAATGG
GCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAA
GGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTC
ATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATG
GATAAACAACCACCACTCACTGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTC
ATCAAGAATAACAAACTCTATGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCT
TCAATCTCTGCAATCAAAGCATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATT
ATCATTGAAGGTTCCGAAGAATCTGGTTCAATCCATTTACCACAATATGTTGAGAAGTTC
CAAGCTGAAATTCAAATTC----------
Length of 5' end seq. 559
3' end seq. ID VSK267Z
3' end seq. 
>VSK267Z.Seq
----------GATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGA
AAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGA
AGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGT
TACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCC
ATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTTGA
TTAAATAAATAAACCTTTATTTCATTATATCTTTAAAATCATTTTATTATTTTATTATTA
TTTTTATTTTAAATTTATTTAATAATTTAATATATTAATGGAAATCCAATTCACTATTTC
CAATTAATAATGAAGGTTTAAACAAATTCAACAAATTTTAACACAAACACAATATCTAAT
TTTTTTTTAAGTATTTTAACATTNCTAATAAATAATAAATA
Length of 3' end seq. 511
Connected seq. ID VSK267P
Connected seq. 
>VSK267P.Seq
GTCTTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTA
CCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATATGATGCAGAATGG
GCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAA
GGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTC
ATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATG
GATAAACAACCACCACTCACTGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTC
ATCAAGAATAACAAACTCTATGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCT
TCAATCTCTGCAATCAAAGCATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATT
ATCATTGAAGGTTCCGAAGAATCTGGTTCAATCCATTTACCACAATATGTTGAGAAGTTC
CAAGCTGAAATTCAAATTC----------GATAAATGTGCTTCAGGTTGGGATTCACCAC
AAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAG
ACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTT
TCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAA
ATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAG
ATGCTCATTCCAAGTTTGATTAAATAAATAAACCTTTATTTCATTATATCTTTAAAATCA
TTTTATTATTTTATTATTATTTTTATTTTAAATTTATTTAATAATTTAATATATTAATGG
AAATCCAATTCACTATTTCCAATTAATAATGAAGGTTTAAACAAATTCAACAAATTTTAA
CACAAACACAATATCTAATTTTTTTTTAAGTATTTTAACATTNCTAATAAATAATAAATA
Length of connected seq. 1070
Full length Seq ID -
Full length Seq. -
Length of full length seq. -