VSK253
Library VS
(Link to library)
Clone ID VSK253
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07075-1
Original site URL
Representative seq. ID VSK253F
(Link to Original site)
Representative DNA sequence
>VSK253 (VSK253Q) /CSM/VS/VSK2-C/VSK253Q.Seq.d/
AACCGATTCAATATTGGTATCAGCAATTGTCACTGGTGAAGATGATTATTCGCATTTAGA
TATTATGGTCTATGAAGAGGAATGCGATAATCTATACGTTCATCATGATATTATCCTCTC
ATCATATCCATTGGCATTGGCATGGATGGATCAAAACCCAATAAATCCACAAGAGAAAGG
TTCGTTCATGGCCGTTGGTACTTTCGAGCCATCCATCGAAATTTGGGATTTGGATGTTGT
AGATAATTTAATTCCAACCGTTATATTGGGTGGTAAAGAAGAGGATAGCGCCGATCCAAT
GAAAAAGCCATCCGCTAAAAAACGTGGTGGTAAACATAATAAATTCAAGGAAGGTAGTCA
TAGAGATGGTGTTATGTCTCTCTCTTGGAATAGTCATCAACGTAATGTTTTAGCAAGTGG
TAGCAGTGATAATACCGTCAAGGTTTGGGATATCACAACTCAACAATGTCTCAACACCTT
TACTCATCATAAGGATAAAGTXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
TDSILVSAIVTGEDDYSHLDIMVYEEECDNLYVHHDIILSSYPLALAWMDQNPINPQEKG
SFMAVGTFEPSIEIWDLDVVDNLIPTVILGGKEEDSADPMKKPSAKKRGGKHNKFKEGSH
RDGVMSLSWNSHQRNVLASGSSDNTVKVWDITTQQCLNTFTHHKDK---


Translated Amino Acid sequence (All Frames)
Frame A:
nrfnigisnchw*r*lfafryygl*rgmr*sirss*yypliisigigmdgskpnkstrer
fvhgrwyfraihrnlgfgccr*fnsnryigw*rrg*rrsnekair*ktww*t**iqgr*s
*rwcyvslle*sst*cfskw*q**yrqglgyhnstmsqhlyss*g*---


Frame B:
TDSILVSAIVTGEDDYSHLDIMVYEEECDNLYVHHDIILSSYPLALAWMDQNPINPQEKG
SFMAVGTFEPSIEIWDLDVVDNLIPTVILGGKEEDSADPMKKPSAKKRGGKHNKFKEGSH
RDGVMSLSWNSHQRNVLASGSSDNTVKVWDITTQQCLNTFTHHKDK---


Frame C:
piqywyqqlslvkmiiri*ilwsmkrnaiiytfimilsshhihwhwhgwiktq*ihkrkv
rswplvlsshpskfgiwml*ii*fqplywvvkkriapiq*kshplknvvvniinsrkvvi
emvlclslgivinvmf*qvvaviipsrfgisqlnnvstplliirik---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK253 (VSK253Q) /CSM/VS/VSK2-C/VSK253Q.Seq.d/ 993 0.0
VSI371 (VSI371Q) /CSM/VS/VSI3-C/VSI371Q.Seq.d/ 34 2.0
VHB115 (VHB115Q) /CSM/VH/VHB1-A/VHB115Q.Seq.d/ 34 2.0
CHC341 (CHC341Q) /CSM/CH/CHC3-B/CHC341Q.Seq.d/ 34 2.0
CHC232 (CHC232Q) /CSM/CH/CHC2-B/CHC232Q.Seq.d/ 34 2.0
AHI757 (AHI757Q) /CSM/AH/AHI7-C/AHI757Q.Seq.d/ 34 2.0
AHD510 (AHD510Q) /CSM/AH/AHD5-A/AHD510Q.Seq.d/ 34 2.0
AFJ688 (AFJ688Q) /CSM/AF/AFJ6-D/AFJ688Q.Seq.d/ 34 2.0
AFG183 (AFG183Q) /CSM/AF/AFG1-D/AFG183Q.Seq.d/ 34 2.0
VHA322 (VHA322Q) /CSM/VH/VHA3-A/VHA322Q.Seq.d/ 32 7.8

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 993 0.0 1
BJ159566|BJ159566.1 Physcomitrella patens subsp. patens cDNA clone:pph16h10, 5' end, single read. 46 0.42 1
AF305612|AF305612.1 Borrelia burgdorferi strain pGau LMP1 (lmp1) gene, complete cds. 44 1.6 1
AP004600|AP004600.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 8/13. 42 4.4 3
U23179|U23179.2 Caenorhabditis elegans cosmid C27D6, complete sequence. 42 6.5 1
BG128302|BG128302.1 EST473948 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF19N21 5' sequence, mRNA sequence. 42 6.5 1
BF460048|T05027, mRNA sequence. 42 6.5 1
AW441898|AW441898.1 EST311294 tomato fruit red ripe, TAMU Lycopersicon esculentum cDNA clone cLEN18L18 5', mRNA sequence. 42 6.5 1
BM411909|BM411909.1 EST586236 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG58G18 5' end, mRNA sequence. 42 6.5 1
BJ113789|BJ113789.1 Caenorhabditis elegans cDNA clone:yk1172b10 : 5' end, single read. 42 6.5 1
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_77(AC116305|pid:none) Dictyostelium discoideum chromoso... 348 4e-95
CR382131_43(CR382131|pid:none) Yarrowia lipolytica strain CLIB12... 158 8e-38
EU976032_1(EU976032|pid:none) Zea mays clone 509150 periodic try... 155 4e-37
AC126012_7(AC126012|pid:none) Medicago truncatula clone mth2-27p... 154 1e-36
AY050883_1(AY050883|pid:none) Arabidopsis thaliana unknown prote... 152 4e-36
AM920430_79(AM920430|pid:none) Penicillium chrysogenum Wisconsin... 151 7e-36
CP000585_50(CP000585|pid:none) Ostreococcus lucimarinus CCE9901 ... 150 2e-35
CU633867_85(CU633867|pid:none) Podospora anserina genomic DNA ch... 148 6e-35
AP007151_719(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 147 2e-34
(Q9P775) Uncharacterized WD repeat-containing protein C17D11.16.... 145 7e-34
protein update 2009. 3.26
PSORT

psg: 0.75 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: mitochondrial

>> prediction for VSK253 is cyt

5' end seq. ID VSK253F
5' end seq.
>VSK253F.Seq
AACCGATTCAATATTGGTATCAGCAATTGTCACTGGTGAAGATGATTATTCGCATTTAGA
TATTATGGTCTATGAAGAGGAATGCGATAATCTATACGTTCATCATGATATTATCCTCTC
ATCATATCCATTGGCATTGGCATGGATGGATCAAAACCCAATAAATCCACAAGAGAAAGG
TTCGTTCATGGCCGTTGGTACTTTCGAGCCATCCATCGAAATTTGGGATTTGGATGTTGT
AGATAATTTAATTCCAACCGTTATATTGGGTGGTAAAGAAGAGGATAGCGCCGATCCAAT
GAAAAAGCCATCCGCTAAAAAACGTGGTGGTAAACATAATAAATTCAAGGAAGGTAGTCA
TAGAGATGGTGTTATGTCTCTCTCTTGGAATAGTCATCAACGTAATGTTTTAGCAAGTGG
TAGCAGTGATAATACCGTCAAGGTTTGGGATATCACAACTCAACAATGTCTCAACACCTT
TACTCATCATAAGGATAAAGT----------
Length of 5' end seq. 501
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -