VSK252
Library VS
(Link to library)
Clone ID VSK252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12592-1
Original site URL
Representative seq. ID VSK252P
(Link to Original site)
Representative DNA sequence
>VSK252 (VSK252Q) /CSM/VS/VSK2-C/VSK252Q.Seq.d/
AATAAATAAAAAAAAATGGAATTATTAACAGACGATCAAAAAAATGAATTTCAAATTTGT
TTCACACAATTCGATAAAGATAATGATGGAAGACTTAATCCAAAAGAATCAGTTATGGCA
TTGAAATCATTGGGTGTAAATTTACCAGAATCTGATGTTTCATCAGGCACAGATTTTAAT
GGTTTCTTACAAGTTGTAGTTAGAAAACTTCAAATTACTGATCCAGCTGATGAATTAAAA
AGAGCTTTTAATTGTTTTGATACAGATGGTACTGGTTCAATTTCAGCACAACATTTAAAA
CAAATTCTTACAACATTAGGTGACACTTTAACATCTCAAGAAGCAGATGAATTAATTAGG
GATACTGATACCGATAGAGATGGTTATATTTCTTCAGATGAAGCTACAAAATTAATTCTT
TCAAAATTACAATAAACCTTTAGCGAATAATGGAAAAAAACAAAAAAAAAAXXXXXXXXX
XAAATTAATTCCTTCAAAANTACNANAAACCCTTANCGAANAATGGAAAAAAACNAAAAA
NACAAAAACAAAAAACNAATATATTTAAAATAAAATCCTCACAAAACAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
inkkkwny*qtikkmnfkfvshnsikimmedliqknqlwh*nhwv*iyqnlmfhqaqilm
vsykl*lenfklliqlmn*kellivliqmvlvqfqhni*nkflqh*vtl*hlkkqmn*lg
ilipiemviflqmklqn*FFQNYNKPLANNGKKQKK---

---INSFKXTXNPXRXMEKNXKXKNKKXIYLK*nphktk


Translated Amino Acid sequence (All Frames)
Frame A:
nk*kkmelltddqknefqicftqfdkdndgrlnpkesvmalkslgvnlpesdvssgtdfn
gflqvvvrklqitdpadelkrafncfdtdgtgsisaqhlkqilttlgdtltsqeadelir
dtdtdrdgyissdeatklilsklq*tfse*wkktkkk---

---klipskxxxtlxexwkktkxtktknxyi*nkiltkqk

Frame B:
inkkkwny*qtikkmnfkfvshnsikimmedliqknqlwh*nhwv*iyqnlmfhqaqilm
vsykl*lenfklliqlmn*kellivliqmvlvqfqhni*nkflqh*vtl*hlkkqmn*lg
ilipiemviflqmklqn*FFQNYNKPLANNGKKQKK---

---n*flqxyxkplxxngkkxkxqkqktnifkikssqnk

Frame C:
*ikkngiinrrskk*isnlfhtir*r**wkt*skrisygieiigckftri*cfirhrf*w
fltscs*ktsny*ss**ikksf*lf*yrwywfnfsttfktnsynir*hfnisrsr*in*g
y*yr*rwlyffr*sykinsfkitinl*rimeknkkk---

---INSFKXTXNPXRXMEKNXKXKNKKXIYLK*nphktk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK252 (VSK252Q) /CSM/VS/VSK2-C/VSK252Q.Seq.d/ 825 0.0
VSD509 (VSD509Q) /CSM/VS/VSD5-A/VSD509Q.Seq.d/ 825 0.0
VHA848 (VHA848Q) /CSM/VH/VHA8-B/VHA848Q.Seq.d/ 795 0.0
VSG846 (VSG846Q) /CSM/VS/VSG8-B/VSG846Q.Seq.d/ 468 e-131
SLG393 (SLG393Q) /CSM/SL/SLG3-D/SLG393Q.Seq.d/ 36 0.58
SFJ825 (SFJ825Q) /CSM/SF/SFJ8-B/SFJ825Q.Seq.d/ 36 0.58
CHL252 (CHL252Q) /CSM/CH/CHL2-C/CHL252Q.Seq.d/ 36 0.58
AHM449 (AHM449Q) /CSM/AH/AHM4-C/AHM449Q.Seq.d/ 36 0.58
VSG133 (VSG133Q) /CSM/VS/VSG1-B/VSG133Q.Seq.d/ 34 2.3
VHO671 (VHO671Q) /CSM/VH/VHO6-C/VHO671Q.Seq.d/ 34 2.3

own update 2003. 1.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ693161|AZ693161.1 ENTKF78TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 0.48 1
AX349001|AX349001.1 Sequence 459 from Patent WO0202807. 36 1.2 3
AX599007|AX599007.1 Sequence 347 from Patent WO02077272. 36 1.7 2
AX345925|AX345925.1 Sequence 996 from Patent WO0200928. 38 1.9 2
AC106494|AC106494.5 Rattus norvegicus clone CH230-184F18, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 1.9 1
BX323561|BX323561.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-113G3. 44 1.9 1
AC096595|AC096595.4 Rattus norvegicus clone CH230-4P17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 1.9 1
BX511307|BX511307.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP71-1A16. 44 2.0 3
AX346384|AX346384.1 Sequence 1455 from Patent WO0200928. 40 2.0 2
AC019732|AC019732.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 40 2.9 2
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC145330_23(AC145330|pid:none) Medicago truncatula clone mth2-17... 117 3e-25
AF084425_1(AF084425|pid:none) Synthetic construct calmodulin mut... 116 4e-25
(P93087) RecName: Full=Calmodulin; Short=CaM; &AB05084... 116 5e-25
CS560270_1(CS560270|pid:none) Sequence 857 from Patent WO2006032... 115 7e-25
DQ881447_1(DQ881447|pid:none) Betula halophila calmodulin (CaM) ... 115 7e-25
S58311(S58311) calmodulin - Bidens pilosa &X89890_1(X89890|pid:... 115 9e-25
X98404_1(X98404|pid:none) C.annuum mRNA for calmodulin-2. 115 1e-24
(P18061) RecName: Full=Calmodulin; Short=CaM; &AM49494... 115 1e-24
(P11118) RecName: Full=Calmodulin; Short=CaM; &EU93585... 115 1e-24
U48691_1(U48691|pid:none) Triticum aestivum calmodulin TaCaM2-2 ... 114 1e-24
protein update 2009. 3.26
PSORT

psg: 0.53 gvh: 0.31 alm: 0.81 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: mitochondrial
28.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VSK252 is mit

5' end seq. ID VSK252F
5' end seq.
>VSK252F.Seq
AATAAATAAAAAAAAATGGAATTATTAACAGACGATCAAAAAAATGAATTTCAAATTTGT
TTCACACAATTCGATAAAGATAATGATGGAAGACTTAATCCAAAAGAATCAGTTATGGCA
TTGAAATCATTGGGTGTAAATTTACCAGAATCTGATGTTTCATCAGGCACAGATTTTAAT
GGTTTCTTACAAGTTGTAGTTAGAAAACTTCAAATTACTGATCCAGCTGATGAATTAAAA
AGAGCTTTTAATTGTTTTGATACAGATGGTACTGGTTCAATTTCAGCACAACATTTAAAA
CAAATTCTTACAACATTAGGTGACACTTTAACATCTCAAGAAGCAGATGAATTAATTAGG
GATACTGATACCGATAGAGATGGTTATATTTCTTCAGATGAAGCTACAAAATTAATTCTT
TCAAAATTACAATAAACCTTTAGCGAATAATGGAAAAAAACAAAAAAAAAA---------
-
Length of 5' end seq. 471
3' end seq. ID VSK252Z
3' end seq.
>VSK252Z.Seq
----------AAATTAATTCCTTCAAAANTACNANAAACCCTTANCGAANAATGGAAAAA
AACNAAAAANACAAAAACAAAAAACNAATATATTTAAAATAAAATCCTCACAAAACAAAA
A
Length of 3' end seq. 111
Connected seq. ID VSK252P
Connected seq.
>VSK252P.Seq
AATAAATAAAAAAAAATGGAATTATTAACAGACGATCAAAAAAATGAATTTCAAATTTGT
TTCACACAATTCGATAAAGATAATGATGGAAGACTTAATCCAAAAGAATCAGTTATGGCA
TTGAAATCATTGGGTGTAAATTTACCAGAATCTGATGTTTCATCAGGCACAGATTTTAAT
GGTTTCTTACAAGTTGTAGTTAGAAAACTTCAAATTACTGATCCAGCTGATGAATTAAAA
AGAGCTTTTAATTGTTTTGATACAGATGGTACTGGTTCAATTTCAGCACAACATTTAAAA
CAAATTCTTACAACATTAGGTGACACTTTAACATCTCAAGAAGCAGATGAATTAATTAGG
GATACTGATACCGATAGAGATGGTTATATTTCTTCAGATGAAGCTACAAAATTAATTCTT
TCAAAATTACAATAAACCTTTAGCGAATAATGGAAAAAAACAAAAAAAAAA---------
-AAATTAATTCCTTCAAAANTACNANAAACCCTTANCGAANAATGGAAAAAAACNAAAAA
NACAAAAACAAAAAACNAATATATTTAAAATAAAATCCTCACAAAACAAAAA
Length of connected seq. 582
Full length Seq ID -
Full length Seq. -
Length of full length seq. -