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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK240
Library VS
(Link to library)
Clone ID VSK240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16390-1
Original site URL
Representative seq. ID VSK240P
(Link to Original site)
Representative DNA sequence 
>VSK240 (VSK240Q) /CSM/VS/VSK2-B/VSK240Q.Seq.d/
CCCCCCTCGAGGTCGACCCCGCGTCCGGTCTTCAATCATGGGTACTCCATACCAAGGTAC
TGCTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAA
TGATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAG
AGCTTTAGTTTATTATACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAA
TTTGGCTTCCAATGCAGTCTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATAC
TCCACTCGAAGGTGGTGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTAT
GCACTCACCACAACAAACTACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGT
TTGGTAAACTACTTTGTATTATTTTTTTTTCTCTACAATAATTGTAATAAAATCGATTTA
TATTAAATTTATTGTCACTTTATAATTAAAAAAAAAAXXXXXXXXXXGTCATTCAATCAA
TGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTG
TAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAA
AATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATACAACTACTCAATATAGTACTG
GTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGTCTTAGAATGGCCAAATGATG
GTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGTATATTTAAATAACTTTAAAG
ACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAACTACAAATACTGAATATAACA
AAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTTGTATTATTTTTTTTTCTCTACAA
TAATTGTAATAAAATCGATTTATATTAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
ppsrstprpvfnhgysiprycsrwylgfyw*ccrcwlfck**shc*wcrfmvkinssr*k
sfsllynysi*ywffn*ll*fgfqcslrmak*wcc***aystrrwcifk*l*rlvsl*wy
altttnyky*i*qrnefqlclvnyfvlffflynncnkidly*IYCHFIIKKK---

---VIQSMGTPYQGTALAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYY
TTTQYSTGSLINYCNLASNAVLEWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQ
TTNTEYNKEMSSNSVW*ttlyyfffstiiviksiyik
Translated Amino Acid sequence (All Frames) 
Frame A:
ppsrstprpvfnhgysiprycsrwylgfyw*ccrcwlfck**shc*wcrfmvkinssr*k
sfsllynysi*ywffn*ll*fgfqcslrmak*wcc***aystrrwcifk*l*rlvsl*wy
altttnyky*i*qrnefqlclvnyfvlffflynncnkidly*IYCHFIIKKK---

---VIQSMGTPYQGTALAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYY
TTTQYSTGSLINYCNLASNAVLEWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQ
TTNTEYNKEMSSNSVW*ttlyyfffstiiviksiyik

Frame B:
pprgrprvrssimgtpyqgtalagtwasigsavgvgcsanddltvdgaalwlksipadkr
alvyytttqystgslinycnlasnavlewpndgvvdnehtpleggvylnnfkdwchsdgm
hspqqttnteynkemssnsvw*ttlyyfffstiiviksiyikfivtl*lkkk---

---sfnqwvlhtkvllslvlglllvvl*vlvvlqmmisllmvplyg*nqfqqikel*fii
qllnivlvl*liiviwlpmqs*ngqmmvllimsilhskvvyi*itlktgvtlmvcthhnk
lqilnitkk*vptlfgkllciiffslq*l**nrfil

Frame C:
plevdpasglqswvlhtkvllslvlglllvvl*vlvvlqmmisllmvplyg*nqfqqike
l*fiiqllnivlvl*liiviwlpmqs*ngqmmvllimsilhskvvyi*itlktgvtlmvc
thhnklqilnitkk*vptlfgkllciiffslq*l**nrfilnllslyn*kk---

---hsingysiprycsrwylgfyw*ccrcwlfck**shc*wcrfmvkinssr*ksfslly
nysi*ywffn*ll*fgfqcslrmak*wcc***aystrrwcifk*l*rlvsl*wyaltttn
yky*i*qrnefqlclvnyfvlffflynncnkidly*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK240 (VSK240Q) /CSM/VS/VSK2-B/VSK240Q.Seq.d/                        952   0.0
VSE772 (VSE772Q) /CSM/VS/VSE7-C/VSE772Q.Seq.d/                        868   0.0
VHQ437 (VHQ437Q) /CSM/VH/VHQ4-B/VHQ437Q.Seq.d/                        868   0.0
VHP806 (VHP806Q) /CSM/VH/VHP8-A/VHP806Q.Seq.d/                        868   0.0
VHP701 (VHP701Q) /CSM/VH/VHP7-A/VHP701Q.Seq.d/                        868   0.0
VHP580 (VHP580Q) /CSM/VH/VHP5-D/VHP580Q.Seq.d/                        868   0.0
VHP430 (VHP430Q) /CSM/VH/VHP4-B/VHP430Q.Seq.d/                        868   0.0
VHO841 (VHO841Q) /CSM/VH/VHO8-B/VHO841Q.Seq.d/                        868   0.0
VHO695 (VHO695Q) /CSM/VH/VHO6-D/VHO695Q.Seq.d/                        868   0.0
VHO642 (VHO642Q) /CSM/VH/VHO6-B/VHO642Q.Seq.d/                        868   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   414  0.0  10
Z11691|Z11691.1 Dictyostelium discoideum mRNA for Conditioned medium factor.   428  0.0  5
BG985824|BG985824.1 5155t3 NICHD Zebrafish normalized I Danio rerio cDNA clone 5155, mRNA sequence.    54  0.003  1
BG985792|BG985792.1 5128 NICHD Zebrafish normalized I Danio rerio cDNA clone 5128, mRNA sequence.    54  0.003  1
BG985726|BG985726.1 2600 NICHD Zebrafish normalized I Danio rerio cDNA clone 2600, mRNA sequence.    54  0.003  1
BG985718|BG985718.1 2508 NICHD Zebrafish normalized I Danio rerio cDNA clone 2508, mRNA sequence.    54  0.003  1
AZ141674|AZ141674.1 SP_0045_A1_D10_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=45 Col=19 Row=G, DNA sequence.    38  0.004  2
AZ141802|AZ141802.1 SP_0045_A1_H10_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=45 Col=19 Row=O, DNA sequence.    38  0.004  2
Z98551|Z98551.1 Plasmodium falciparum MAL3P6.                     36  0.075  9
BG784455|BG784455.1 SEAUMC004412 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PC_0022_A1_B06_MR 5', mRNA sequence.    34  0.17  3
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920689_339(AM920689|pid:none) Xanthomonas campestris pv. campe...   122   2e-26
CP000050_316(CP000050|pid:none) Xanthomonas campestris pv. campe...   120   7e-26
AE012127_8(AE012127|pid:none) Xanthomonas campestris pv. campest...   120   7e-26
AM039952_339(AM039952|pid:none) Xanthomonas campestris pv. vesic...   119   1e-25
AP007171_154(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    34   8.4
protein update 2009. 3.26
PSORT 

 psg: 0.89  gvh: 0.55  alm: 0.40  top: 0.63  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSK240 is cyt
5' end seq. ID VSK240F
5' end seq. 
>VSK240F.Seq
CCCCCCTCGAGGTCGACCCCGCGTCCGGTCTTCAATCATGGGTACTCCATACCAAGGTAC
TGCTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAA
TGATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAG
AGCTTTAGTTTATTATACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAA
TTTGGCTTCCAATGCAGTCTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATAC
TCCACTCGAAGGTGGTGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTAT
GCACTCACCACAACAAACTACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGT
TTGGTAAACTACTTTGTATTATTTTTTTTTCTCTACAATAATTGTAATAAAATCGATTTA
TATTAAATTTATTGTCACTTTATAATTAAAAAAAAAA----------
Length of 5' end seq. 517
3' end seq. ID VSK240Z
3' end seq. 
>VSK240Z.Seq
----------GTCATTCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTAC
TTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGT
TGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTA
TACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGC
AGTCTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGG
TGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACA
AACTACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTT
GTATTATTTTTTTTTCTCTACAATAATTGTAATAAAATCGATTTATATTAAA
Length of 3' end seq. 462
Connected seq. ID VSK240P
Connected seq. 
>VSK240P.Seq
CCCCCCTCGAGGTCGACCCCGCGTCCGGTCTTCAATCATGGGTACTCCATACCAAGGTAC
TGCTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAA
TGATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAG
AGCTTTAGTTTATTATACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAA
TTTGGCTTCCAATGCAGTCTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATAC
TCCACTCGAAGGTGGTGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTAT
GCACTCACCACAACAAACTACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGT
TTGGTAAACTACTTTGTATTATTTTTTTTTCTCTACAATAATTGTAATAAAATCGATTTA
TATTAAATTTATTGTCACTTTATAATTAAAAAAAAAA----------GTCATTCAATCAA
TGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTG
TAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAA
AATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATACAACTACTCAATATAGTACTG
GTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGTCTTAGAATGGCCAAATGATG
GTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGTATATTTAAATAACTTTAAAG
ACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAACTACAAATACTGAATATAACA
AAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTTGTATTATTTTTTTTTCTCTACAA
TAATTGTAATAAAATCGATTTATATTAAA
Length of connected seq. 979
Full length Seq ID -
Full length Seq. -
Length of full length seq. -