VSK233
Library VS
(Link to library)
Clone ID VSK233
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01347-1
Original site URL
Representative seq. ID VSK233P
(Link to Original site)
Representative DNA sequence
>VSK233 (VSK233Q) /CSM/VS/VSK2-B/VSK233Q.Seq.d/
GTACAAATAAAAATCATATATATAATACCTCAATTCATAATTTATCAGAGAATCAAGCTT
TGGTAACTAAATATATCGATTTTAATAAAATAAATTTAAATAAATAAATAAATAAATAAA
TTATTAAAGATTTTATTTTTTTTATGTACGATATACATATCCGGTGGGGGAATATTAATT
TATGAAAATTAAAAAAAAAAXXXXXXXXXXGTACAAATAAAAATCATATATATAATACCT
CAATTCATAATTTATCAGAGAATCAAGCTTTGGTAACTAAATATATCGATTTTAATAAAA
TAAATTTAAATAAATAAATAAATAAATAAATTATTAAAGATTTTATTTTTTTNATGTAC
sequence update 2001. 3.22
Translated Amino Acid sequence
yk*ksyi*ylns*firessfgn*iyrf**nkfk*ink*iny*rfyffyvrytypvgey*F
MKIKKK---

---TNKNHIYNTSIHNLSENQALVTKYIDFNKINLNK*ink*iikdfifxmy


Translated Amino Acid sequence (All Frames)
Frame A:
vqikiiyiipqfiiyqriklw*lnisilik*i*ink*inkllkilfflctiyisgggili
yen*kk---

---vqikiiyiipqfiiyqriklw*lnisilik*i*ink*inkllkilffxc

Frame B:
yk*ksyi*ylns*firessfgn*iyrf**nkfk*ink*iny*rfyffyvrytypvgey*F
MKIKKK---

---yk*ksyi*ylns*firessfgn*iyrf**nkfk*ink*iny*rfyffxv

Frame C:
tnknhiyntsihnlsenqalvtkyidfnkinlnk*ink*iikdfiffmydihirwgninl
*klkkk---

---TNKNHIYNTSIHNLSENQALVTKYIDFNKINLNK*ink*iikdfifxmy

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK233 (VSK233Q) /CSM/VS/VSK2-B/VSK233Q.Seq.d/ 163 2e-39
SLG841 (SLG841Q) /CSM/SL/SLG8-B/SLG841Q.Seq.d/ 163 2e-39
SSB168 (SSB168Q) /CSM/SS/SSB1-C/SSB168Q.Seq.d/ 66 4e-10
SLG149 (SLG149Q) /CSM/SL/SLG1-C/SLG149Q.Seq.d/ 36 0.35
VHI205 (VHI205Q) /CSM/VH/VHI2-A/VHI205Q.Seq.d/ 34 1.4
SSK527 (SSK527Q) /CSM/SS/SSK5-B/SSK527Q.Seq.d/ 34 1.4
SSK385 (SSK385Q) /CSM/SS/SSK3-D/SSK385Q.Seq.d/ 34 1.4
SSK111 (SSK111Q) /CSM/SS/SSK1-A/SSK111Q.Seq.d/ 34 1.4
SSE527 (SSE527Q) /CSM/SS/SSE5-B/SSE527Q.Seq.d/ 34 1.4
SSD530 (SSD530Q) /CSM/SS/SSD5-B/SSD530Q.Seq.d/ 34 1.4

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE001382|AE001382.2 Plasmodium falciparum 3D7 chromosome 2 section 19 of 73 of the complete sequence. 34 0.024 4
BZ495258|BZ495258.1 BONIK32TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONIK32, DNA sequence. 48 0.073 1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 36 0.079 8
X65740|X65740.2 Plasmodium falciparum P-type ATPase 3 gene. 36 0.086 2
X65738|X65738.1 P.falciparum gene for ATPase 1. 36 0.088 2
AQ567811|AQ567811.1 HS_2116_A2_F02_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2116 Col=4 Row=K, genomic survey sequence. 34 0.092 2
AX356493|AX356493.1 Sequence 127 from Patent WO0181622. 34 0.21 6
AX347026|AX347026.1 Sequence 2097 from Patent WO0200928. 34 0.21 6
BD260169|BD260169.1 50 human secreted proteins. 42 0.26 2
BD260165|BD260165.1 50 human secreted proteins. 42 0.26 2
dna update 2003. 7.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 275,642,486
protein update 2009. 3.26
PSORT

psg: 0.72 gvh: 0.20 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VSK233 is nuc

5' end seq. ID VSK233F
5' end seq.
>VSK233F.Seq
GTACAAATAAAAATCATATATATAATACCTCAATTCATAATTTATCAGAGAATCAAGCTT
TGGTAACTAAATATATCGATTTTAATAAAATAAATTTAAATAAATAAATAAATAAATAAA
TTATTAAAGATTTTATTTTTTTTATGTACGATATACATATCCGGTGGGGGAATATTAATT
TATGAAAATTAAAAAAAAAA----------
Length of 5' end seq. 200
3' end seq. ID VSK233Z
3' end seq.
>VSK233Z.Seq
----------GTACAAATAAAAATCATATATATAATACCTCAATTCATAATTTATCAGAG
AATCAAGCTTTGGTAACTAAATATATCGATTTTAATAAAATAAATTTAAATAAATAAATA
AATAAATAAATTATTAAAGATTTTATTTTTTTNATGTAC
Length of 3' end seq. 149
Connected seq. ID VSK233P
Connected seq.
>VSK233P.Seq
GTACAAATAAAAATCATATATATAATACCTCAATTCATAATTTATCAGAGAATCAAGCTT
TGGTAACTAAATATATCGATTTTAATAAAATAAATTTAAATAAATAAATAAATAAATAAA
TTATTAAAGATTTTATTTTTTTTATGTACGATATACATATCCGGTGGGGGAATATTAATT
TATGAAAATTAAAAAAAAAA----------GTACAAATAAAAATCATATATATAATACCT
CAATTCATAATTTATCAGAGAATCAAGCTTTGGTAACTAAATATATCGATTTTAATAAAA
TAAATTTAAATAAATAAATAAATAAATAAATTATTAAAGATTTTATTTTTTTNATGTAC
Length of connected seq. 349
Full length Seq ID -
Full length Seq. -
Length of full length seq. -