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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK232
Library VS
(Link to library)
Clone ID VSK232
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15096-1
Original site URL
Representative seq. ID VSK232P
(Link to Original site)
Representative DNA sequence 
>VSK232 (VSK232Q) /CSM/VS/VSK2-B/VSK232Q.Seq.d/
CTTTAGGCATCATCAAAATGAAATACTTAGCTGCTTACCTCTTAGCTTCCTTATCAGGCA
ATGCCAACGCTGCCTCAGTCACCAAGATTTTACAATCTGTTGGTGTTGAAGTTGATGCTG
CTCGTGTCGAATCTGTCTGCAAAGAATTAGACGGTAAAGACGTCCAAGCCTTAATTGCCG
CCGGTAAATCTAAAGTTGGTTCAGTTGCCGCTGCCGCCGCCCCAGCTGCTGCCACCTCTG
CTGCCCCAGCTGCTGCTGCCGCTGCCCCAGCCAAAAAAGTTGTTGAAGAGAAAAAAGAAG
AATCAGACGACGATATGGGTATGGGTTTATTCGACTAAAAAGACAACTAATATGAGCAAA
CTATTATTAGAATGCTTATAGGCAGTTTCCTATAGTATTTATAAAAAGAAAAATAAAAAA
AAATAAAAATATANNAAAAAAAXXXXXXXXXXCTTTAGGCATCATCAAAATGAAATACTT
AGCTGCTTACCTCTTAGCTTCCTTATCAGGCAATGCCAACGCTGCCTCAGTCACCAAGAT
TTTACAATCTGTTGGTGTTGAAGTTGATGCTGCTCGTGTCGAATCTGTCTGCAAAGAATT
AGACGGTAAAGACGTCCAAGCCTTAATTGCCGCCGGTAAATCTAAAGTTGGTTCAGTTGC
CGCTGCCGCCGCCCCAGCTGCTGCCACCTCTGCTGCCCCAGCTGCTGCTGCCGCTGCCCC
AGCCAAAAAAGTTGTTGAAGAGAAAAAAGAAGAATCAGACGACGATATGGGTATGGGTTT
ATTCGACTAAAAAGACAACTAATATGAGCAAACTATTATTAGAATGCTTATAGGCAGTTT
CCTATAGTATTTAAAAAAGAAAAAAAAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
frhhqneilsclplsflirqcqrclshqdfticwc*s*ccscriclqrirr*rrpslncr
r*i*swfscrcrrpscchlccpscccrcpsqksc*rekrrirrrygygfirlkrqli*an
yy*NAYRQFPIVFIKRKIKKNKNIXKK---

---LGIIKMKYLAAYLLASLSGNANAASVTKILQSVGVEVDAARVESVCKELDGKDVQAL
IAAGKSKVGSVAAAAAPAAATSAAPAAAAAAPAKKVVEEKKEESDDDMGMGLFD*kdn*y
eqtiirmligsfl*ylkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
l*assk*nt*llts*lpyqamptlpqsprfynllvlklmllvsnlsakn*tvktskp*lp
pvnlklvqlplpppqllppllpqlllplpqpkkllkrkkknqttiwvwvystkkttnmsk
lllecl*avsysiykkknkkk*kyxkk---

---l*assk*nt*llts*lpyqamptlpqsprfynllvlklmllvsnlsakn*tvktskp
*lppvnlklvqlplpppqllppllpqlllplpqpkkllkrkkknqttiwvwvystkkttn
msklllecl*avsysi*krkkkk

Frame B:
frhhqneilsclplsflirqcqrclshqdfticwc*s*ccscriclqrirr*rrpslncr
r*i*swfscrcrrpscchlccpscccrcpsqksc*rekrrirrrygygfirlkrqli*an
yy*NAYRQFPIVFIKRKIKKNKNIXKK---

---frhhqneilsclplsflirqcqrclshqdfticwc*s*ccscriclqrirr*rrpsl
ncrr*i*swfscrcrrpscchlccpscccrcpsqksc*rekrrirrrygygfirlkrqli
*anyy*nayrqfpivfkkekkkk

Frame C:
lgiikmkylaayllaslsgnanaasvtkilqsvgvevdaarvesvckeldgkdvqaliaa
gkskvgsvaaaaapaaatsaapaaaaaapakkvveekkeesdddmgmglfd*kdn*yeqt
iirmligsfl*yl*kek*kkikixxk---

---LGIIKMKYLAAYLLASLSGNANAASVTKILQSVGVEVDAARVESVCKELDGKDVQAL
IAAGKSKVGSVAAAAAPAAATSAAPAAAAAAPAKKVVEEKKEESDDDMGMGLFD*kdn*y
eqtiirmligsfl*ylkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK232 (VSK232Q) /CSM/VS/VSK2-B/VSK232Q.Seq.d/                        444   e-123
VSH402 (VSH402Q) /CSM/VS/VSH4-A/VSH402Q.Seq.d/                        444   e-123
VSG877 (VSG877Q) /CSM/VS/VSG8-D/VSG877Q.Seq.d/                        444   e-123
VSG117 (VSG117Q) /CSM/VS/VSG1-A/VSG117Q.Seq.d/                        444   e-123
VSE496 (VSE496Q) /CSM/VS/VSE4-D/VSE496Q.Seq.d/                        444   e-123
VSE107 (VSE107Q) /CSM/VS/VSE1-A/VSE107Q.Seq.d/                        444   e-123
VSD248 (VSD248Q) /CSM/VS/VSD2-B/VSD248Q.Seq.d/                        444   e-123
VSC527 (VSC527Q) /CSM/VS/VSC5-B/VSC527Q.Seq.d/                        444   e-123
VSB748 (VSB748Q) /CSM/VS/VSB7-B/VSB748Q.Seq.d/                        444   e-123
VSB540 (VSB540Q) /CSM/VS/VSB5-B/VSB540Q.Seq.d/                        444   e-123
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56192|X56192.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P2.   444  0.0  2
X56193|X56193.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P1.    76  4e-18  3
AF317662|AF317662.1 Candida albicans 60S acidic ribosomal protein type P2-B (p2B) gene, complete cds.    48  2e-09  3
X06958|X06958.1 Yeast mRNA for ribosomal protein A2.              52  6e-09  2
J03760|J03760.1 Yeast (S.cerevisiae) ribosomal protein L44 gene, complete cds.    52  9e-09  2
M26503|M26503.1 S.cerevisiae L12eIB protein gene, complete cds.    52  1e-08  2
Z74781|Z74781.1 S.cerevisiae chromosome XV reading frame ORF YOL039w.    52  2e-08  2
AL392317|AL392317.1 T3 end of clone AR0AA003F10 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    56  8e-04  1
AF317661|AF317661.1 Candida albicans 60S acidic ribosomal protein type P2-A (p2A) gene, complete cds.    40  8e-04  2
BE581235|BE581235.1 kq44a10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RLA2_BOVIN P42899 60S ACIDIC RIBOSOMAL PROTEIN P2. ;, mRNA sequence.    42  0.003  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382132_246(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    41   0.043
Y09056_1(Y09056|pid:none) C.capitata rpp2 gene.                        40   0.095
BC135754_1(BC135754|pid:none) Xenopus tropicalis ribosomal prote...    39   0.21
EU934304_1(EU934304|pid:none) TSA: Anopheles darlingi AD-120 60S...    39   0.21
X05466_1(X05466|pid:none) Drosophila melanogaster mRNA for r rib...    39   0.21
AY119253_1(AY119253|pid:none) Drosophila melanogaster SD22208 fu...    39   0.21
FM992690_436(FM992690|pid:none) Candida dubliniensis CD36 chromo...    38   0.47
(P51408) RecName: Full=60S acidic ribosomal protein P2;  &S32038...    37   0.62
DQ413224_1(DQ413224|pid:none) Acyrthosiphon pisum isolate WHAP02...    37   0.62
(P17478) RecName: Full=60S acidic ribosomal protein P2-beta; Alt...    37   0.62
protein update 2009. 3.26
PSORT 

 psg: 0.79  gvh: 0.71  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 36.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VSK232 is mit
5' end seq. ID VSK232F
5' end seq. 
>VSK232F.Seq
CTTTAGGCATCATCAAAATGAAATACTTAGCTGCTTACCTCTTAGCTTCCTTATCAGGCA
ATGCCAACGCTGCCTCAGTCACCAAGATTTTACAATCTGTTGGTGTTGAAGTTGATGCTG
CTCGTGTCGAATCTGTCTGCAAAGAATTAGACGGTAAAGACGTCCAAGCCTTAATTGCCG
CCGGTAAATCTAAAGTTGGTTCAGTTGCCGCTGCCGCCGCCCCAGCTGCTGCCACCTCTG
CTGCCCCAGCTGCTGCTGCCGCTGCCCCAGCCAAAAAAGTTGTTGAAGAGAAAAAAGAAG
AATCAGACGACGATATGGGTATGGGTTTATTCGACTAAAAAGACAACTAATATGAGCAAA
CTATTATTAGAATGCTTATAGGCAGTTTCCTATAGTATTTATAAAAAGAAAAATAAAAAA
AAATAAAAATATANNAAAAAAA----------
Length of 5' end seq. 442
3' end seq. ID VSK232Z
3' end seq. 
>VSK232Z.Seq
----------CTTTAGGCATCATCAAAATGAAATACTTAGCTGCTTACCTCTTAGCTTCC
TTATCAGGCAATGCCAACGCTGCCTCAGTCACCAAGATTTTACAATCTGTTGGTGTTGAA
GTTGATGCTGCTCGTGTCGAATCTGTCTGCAAAGAATTAGACGGTAAAGACGTCCAAGCC
TTAATTGCCGCCGGTAAATCTAAAGTTGGTTCAGTTGCCGCTGCCGCCGCCCCAGCTGCT
GCCACCTCTGCTGCCCCAGCTGCTGCTGCCGCTGCCCCAGCCAAAAAAGTTGTTGAAGAG
AAAAAAGAAGAATCAGACGACGATATGGGTATGGGTTTATTCGACTAAAAAGACAACTAA
TATGAGCAAACTATTATTAGAATGCTTATAGGCAGTTTCCTATAGTATTTAAAAAAGAAA
AAAAAAAAAAAA
Length of 3' end seq. 422
Connected seq. ID VSK232P
Connected seq. 
>VSK232P.Seq
CTTTAGGCATCATCAAAATGAAATACTTAGCTGCTTACCTCTTAGCTTCCTTATCAGGCA
ATGCCAACGCTGCCTCAGTCACCAAGATTTTACAATCTGTTGGTGTTGAAGTTGATGCTG
CTCGTGTCGAATCTGTCTGCAAAGAATTAGACGGTAAAGACGTCCAAGCCTTAATTGCCG
CCGGTAAATCTAAAGTTGGTTCAGTTGCCGCTGCCGCCGCCCCAGCTGCTGCCACCTCTG
CTGCCCCAGCTGCTGCTGCCGCTGCCCCAGCCAAAAAAGTTGTTGAAGAGAAAAAAGAAG
AATCAGACGACGATATGGGTATGGGTTTATTCGACTAAAAAGACAACTAATATGAGCAAA
CTATTATTAGAATGCTTATAGGCAGTTTCCTATAGTATTTATAAAAAGAAAAATAAAAAA
AAATAAAAATATANNAAAAAAA----------CTTTAGGCATCATCAAAATGAAATACTT
AGCTGCTTACCTCTTAGCTTCCTTATCAGGCAATGCCAACGCTGCCTCAGTCACCAAGAT
TTTACAATCTGTTGGTGTTGAAGTTGATGCTGCTCGTGTCGAATCTGTCTGCAAAGAATT
AGACGGTAAAGACGTCCAAGCCTTAATTGCCGCCGGTAAATCTAAAGTTGGTTCAGTTGC
CGCTGCCGCCGCCCCAGCTGCTGCCACCTCTGCTGCCCCAGCTGCTGCTGCCGCTGCCCC
AGCCAAAAAAGTTGTTGAAGAGAAAAAAGAAGAATCAGACGACGATATGGGTATGGGTTT
ATTCGACTAAAAAGACAACTAATATGAGCAAACTATTATTAGAATGCTTATAGGCAGTTT
CCTATAGTATTTAAAAAAGAAAAAAAAAAAAAAA
Length of connected seq. 864
Full length Seq ID -
Full length Seq. -
Length of full length seq. -