VSK230
Library VS
(Link to library)
Clone ID VSK230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08358-1
Original site URL
Representative seq. ID VSK230P
(Link to Original site)
Representative DNA sequence
>VSK230 (VSK230Q) /CSM/VS/VSK2-B/VSK230Q.Seq.d/
AATAGTTTGACTACTGATTTCATACTAGCGTGGTAAAGCTTCGATGTAAGAAAACGAGGT
GAAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTTTGACGTAGAT
AGTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTTGTTAGAAATT
TTTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTAAAAGGATCTA
AACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTTAGTAGTTATA
AATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGTAGTAGTAGTA
GTAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGGATTTAAATTT
CAAGGTATTTAAATGCGTGAAAATAAAGAAAAAATAAAATGTATAGAAATAGAAAAAAAT
AAATAAAAAAAAAAXXXXXXXXXXAATAGTTTGACTACTGATTTCATACTAGCGTGGTAA
AGCTTCGATGTAAGAAAACGAGGTGAAAAAGGGTATCTTATATTATTCTAATCTATTTAT
TATTTTTACATTTTTGACGTAGATAGTGTTAGAAACTAAAATTCGTTAGTTATTTGGATC
TTCTTGAAAAAGTTGTTAGAAATTTTTGGATGTTGTTAATAGATATTAATAAAGGTCTTG
AAAAAGGGAATGTAAAAGGATCTAAACTACATACCTTAAGTGACTGTTATGAGAGTTCGG
ATAAAAAATTCTTTAGTAGTTATAAATTTTTTTTAACGACGATATTTAAAAGGAAATTAA
AAAGAACTAAACGTAGTAGTAGTAGTAGTAGTAGTATAAAACCACCCACTCATTTAGTAA
TTCTTTATTTTAGGATTTAAATTTCAAGGTATTTAAATGCGGAAAAAAAGAAAAAATAAA
ATGTAAGAAAAAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
iv*llisy*rgkasm*enevkkgilyysnlfiiftflt*ivletkir*lfgss*ksc*kf
ldvvnry**rs*kreckri*ttylk*ll*efg*kil**l*iffnddi*keikkn*t****
***yktthsfsnslf*dlnfkvfkcvkikkk*nv*k*KKINKKK---

---NSLTTDFILAW*sfdvrkrgekgylilf*siyyfyifdvdsvrn*nslviwiflkkl
leifgcc**ilikvlkkgm*kdlnyip*vtvmrvriknslvvinff*rrylkgn*kelnv
vvvvvvv*nhpli**ffilgfkfqgi*mrkkrknkm*ekkk


Translated Amino Acid sequence (All Frames)
Frame A:
nslttdfilaw*sfdvrkrgekgylilf*siyyfyifdvdsvrn*nslviwiflkkllei
fgcc**ilikvlkkgm*kdlnyip*vtvmrvriknslvvinff*rrylkgn*kelnvvvv
vvvv*nhpli**ffilgfkfqgi*mrenkekikcieieknk*kk---

---NSLTTDFILAW*sfdvrkrgekgylilf*siyyfyifdvdsvrn*nslviwiflkkl
leifgcc**ilikvlkkgm*kdlnyip*vtvmrvriknslvvinff*rrylkgn*kelnv
vvvvvvv*nhpli**ffilgfkfqgi*mrkkrknkm*ekkk

Frame B:
iv*llisy*rgkasm*enevkkgilyysnlfiiftflt*ivletkir*lfgss*ksc*kf
ldvvnry**rs*kreckri*ttylk*ll*efg*kil**l*iffnddi*keikkn*t****
***yktthsfsnslf*dlnfkvfkcvkikkk*nv*k*KKINKKK---

---iv*llisy*rgkasm*enevkkgilyysnlfiiftflt*ivletkir*lfgss*ksc
*kfldvvnry**rs*kreckri*ttylk*ll*efg*kil**l*iffnddi*keikkn*t*
******yktthsfsnslf*dlnfkvfkcgkkekikckkkkk

Frame C:
*fdy*fhtsvvklrckktr*krvsyiiliyllflhf*rr*c*klkfvsyldllekvvrnf
wmllidinkglekgnvkgsklhtlsdcyessdkkffssykfflttifkrklkrtkrssss
sssikppthlvilyfri*isrylna*k*rknkmyrnrkk*ikkk---

---*fdy*fhtsvvklrckktr*krvsyiiliyllflhf*rr*c*klkfvsyldllekvv
rnfwmllidinkglekgnvkgsklhtlsdcyessdkkffssykfflttifkrklkrtkrs
ssssssikppthlvilyfri*isrylnaekkkk*nvrkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK230 (VSK230Q) /CSM/VS/VSK2-B/VSK230Q.Seq.d/ 642 0.0
VSK210 (VSK210Q) /CSM/VS/VSK2-A/VSK210Q.Seq.d/ 642 0.0
VSJ474 (VSJ474Q) /CSM/VS/VSJ4-D/VSJ474Q.Seq.d/ 642 0.0
VSH257 (VSH257Q) /CSM/VS/VSH2-C/VSH257Q.Seq.d/ 642 0.0
VSH190 (VSH190Q) /CSM/VS/VSH1-D/VSH190Q.Seq.d/ 642 0.0
VSG724 (VSG724Q) /CSM/VS/VSG7-A/VSG724Q.Seq.d/ 642 0.0
VSG103 (VSG103Q) /CSM/VS/VSG1-A/VSG103Q.Seq.d/ 642 0.0
VSF795 (VSF795Q) /CSM/VS/VSF7-D/VSF795Q.Seq.d/ 642 0.0
VSF309 (VSF309Q) /CSM/VS/VSF3-A/VSF309Q.Seq.d/ 642 0.0
VSE572 (VSE572Q) /CSM/VS/VSE5-C/VSE572Q.Seq.d/ 642 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA. 599 0.0 5
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence. 599 0.0 5
AF020409|AF020409.1 Dictyostelium discoideum DocA (docA) mRNA, complete cds. 131 2e-26 2
AC135073|AC135073.1 Homo sapiens chromosome 8 clone RP11-252B1 map 8, LOW-PASS SEQUENCE SAMPLING. 36 0.003 4
BH559284|BH559284.1 BOGXH07TR BOGX Brassica oleracea genomic clone BOGXH07, DNA sequence. 52 0.013 1
AC013809|AC013809.4 Homo sapiens clone RP11-21C18, LOW-PASS SEQUENCE SAMPLING. 48 0.019 6
AX344551|AX344551.1 Sequence 2 from Patent WO0200932. 36 0.021 12
BX548011|BX548011.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-237G15. 40 0.074 2
AP001556|AP001556.3 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-674P19, WORKING DRAFT SEQUENCE, 3 unordered pieces. 40 0.18 4
AC090337|AC090337.5 Homo sapiens chromosome 18, clone RP11-674P19, complete sequence. 40 0.21 5
dna update 2003. 7.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 945,117,261
protein update 2009. 3.26
PSORT -
5' end seq. ID VSK230F
5' end seq.
>VSK230F.Seq
AATAGTTTGACTACTGATTTCATACTAGCGTGGTAAAGCTTCGATGTAAGAAAACGAGGT
GAAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTTTGACGTAGAT
AGTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTTGTTAGAAATT
TTTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTAAAAGGATCTA
AACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTTAGTAGTTATA
AATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGTAGTAGTAGTA
GTAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGGATTTAAATTT
CAAGGTATTTAAATGCGTGAAAATAAAGAAAAAATAAAATGTATAGAAATAGAAAAAAAT
AAATAAAAAAAAAA----------
Length of 5' end seq. 494
3' end seq. ID VSK230Z
3' end seq.
>VSK230Z.Seq
----------AATAGTTTGACTACTGATTTCATACTAGCGTGGTAAAGCTTCGATGTAAG
AAAACGAGGTGAAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTT
TGACGTAGATAGTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTT
GTTAGAAATTTTTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTA
AAAGGATCTAAACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTT
AGTAGTTATAAATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGT
AGTAGTAGTAGTAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGG
ATTTAAATTTCAAGGTATTTAAATGCGGAAAAAAAGAAAAAATAAAATGTAAGAAAAAAA
AAAAA
Length of 3' end seq. 475
Connected seq. ID VSK230P
Connected seq.
>VSK230P.Seq
AATAGTTTGACTACTGATTTCATACTAGCGTGGTAAAGCTTCGATGTAAGAAAACGAGGT
GAAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTTTGACGTAGAT
AGTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTTGTTAGAAATT
TTTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTAAAAGGATCTA
AACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTTAGTAGTTATA
AATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGTAGTAGTAGTA
GTAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGGATTTAAATTT
CAAGGTATTTAAATGCGTGAAAATAAAGAAAAAATAAAATGTATAGAAATAGAAAAAAAT
AAATAAAAAAAAAA----------AATAGTTTGACTACTGATTTCATACTAGCGTGGTAA
AGCTTCGATGTAAGAAAACGAGGTGAAAAAGGGTATCTTATATTATTCTAATCTATTTAT
TATTTTTACATTTTTGACGTAGATAGTGTTAGAAACTAAAATTCGTTAGTTATTTGGATC
TTCTTGAAAAAGTTGTTAGAAATTTTTGGATGTTGTTAATAGATATTAATAAAGGTCTTG
AAAAAGGGAATGTAAAAGGATCTAAACTACATACCTTAAGTGACTGTTATGAGAGTTCGG
ATAAAAAATTCTTTAGTAGTTATAAATTTTTTTTAACGACGATATTTAAAAGGAAATTAA
AAAGAACTAAACGTAGTAGTAGTAGTAGTAGTAGTATAAAACCACCCACTCATTTAGTAA
TTCTTTATTTTAGGATTTAAATTTCAAGGTATTTAAATGCGGAAAAAAAGAAAAAATAAA
ATGTAAGAAAAAAAAAAAA
Length of connected seq. 969
Full length Seq ID -
Full length Seq. -
Length of full length seq. -