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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK209
Library VS
(Link to library)
Clone ID VSK209
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15669-1
Original site URL
Representative seq. ID VSK209P
(Link to Original site)
Representative DNA sequence 
>VSK209 (VSK209Q) /CSM/VS/VSK2-A/VSK209Q.Seq.d/
AAGACTAATGCCATTTGGTGGTTTCAATTTCCAAAGATTCCCAACAATCGTTGAAGGTGC
CAGAGCAAAAGGTTTACTAAAAAGCTTTTATGTTGAAGAAAAATCAGTTTCAAGAGCTCC
AAGTGTTTCATCTTTTAATATTCAAACTTCAACAATTAATAATAATAATAACAATAATAA
TAATAATAATAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATTNAACTGNAACTACAACTGCAACAAGTGTTTCAGCTTC
AAATTCTCCAACTATTTTATCAGCAAACAATAGTAATTTAAACATTTCGTCAAATAATTC
AAATCTTGGATCTAGTGGTGGTATACCATCCTCAAATTCTTCTTTGACTCCTAATAATAA
ATCAACCAGTCCTTCATCAGGACCAGNTTCCACTTTATTTAAAGGACCACTACTTAGAGT
TTCTTCAAAAAATTGTGTTCAATCAACAAACTCTTCCAAAAAATAAAAATCAAAAAAAAA
AXXXXXXXXXXACAACTGCAACAAGTGNTTCAGCTTCNAATTCTCCAACTATTTTATCAG
CNAACAANAGNAATTTTAACNTTTNGNCAAANAANTCAAATCTTGGATCTAGNGGNGGGA
AACCATCCNCAAANTNTTCTTTGACNCCTAANAATAAAACNACCAGNCCTTNATCAGGNC
CNGTTTCCNCNTTATTTAAAGGNCCNCNACTTAGAGNTTNTTCNAAAAANTGNGNTCNAA
CAACAAACCCTCCNAAAAATAAAAATCNAAAAAAAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
d*chlvvsiskdsqqslkvpeqkvy*kafmlkknqfqelqvfhllifklqqliiiitiii
iiiiviiiiiiiiiiiiiiiiiiiiiixlxlqlqqvfqlqilqlfyqqtivi*tfrqiiq
ildlvvvyhpqill*LLIINQPVLHQDQXPLYLKDHYLEFLQKIVFNQQTLPKNKNQKK-
--

---TTATSXSASNSPTILSANXXNFNXXXXXSNLGSXGGKPSXXXSLTPXNKTTXPXSGP
VSXLFKGPXLRXXSKXXXXTTNPPKNKNXKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
ktnaiwwfqfpkipnnr*rcqskrftkkllc*rkisfksskcfif*ysnfnn*****q**
***************************xnxnyncnkcfsfkfsnyfiskq**fkhfvk*f
kswi*wwytilkfffds***inqsfirtxfhfi*rttt*sffkklcsinklfqkikikkk
---

---TTATSXSASNSPTILSANXXNFNXXXXXSNLGSXGGKPSXXXSLTPXNKTTXPXSGP
VSXLFKGPXLRXXSKXXXXTTNPPKNKNXKKKK

Frame B:
rlmpfggfnfqrfptivegarakgllksfyveeksvsrapsvssfniqtstinnnnnnnn
nnnnsnnnnnnnnnnnnnnnnnnnnnnxtxtttatsvsasnsptilsannsnlnissnns
nlgssggipssnssltpnnkstspssgpxstlfkgpllrvsskncvqstnsskk*kskkk
---

---qlqqvxqlxilqlfyqxtxxiltfxqxxqildlxxgnhpqxxl*xlxikxpxlxqxx
fpxylkxxxlexxxkxxxxqqtlxkikixkkkk

Frame C:
d*chlvvsiskdsqqslkvpeqkvy*kafmlkknqfqelqvfhllifklqqliiiitiii
iiiiviiiiiiiiiiiiiiiiiiiiiixlxlqlqqvfqlqilqlfyqqtivi*tfrqiiq
ildlvvvyhpqill*LLIINQPVLHQDQXPLYLKDHYLEFLQKIVFNQQTLPKNKNQKK-
--

---ncnkxfsfxfsnyfisxqxxf*xxxkxxkswi*xxetixkxffdx*x*nxqxxirxx
fxxi*rxxt*xxfxkxxsnnkpsxk*kskkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK209 (VSK209Q) /CSM/VS/VSK2-A/VSK209Q.Seq.d/                        490   e-137
SSD488 (SSD488Q) /CSM/SS/SSD4-D/SSD488Q.Seq.d/                        490   e-137
SSB805 (SSB805Q) /CSM/SS/SSB8-A/SSB805Q.Seq.d/                        490   e-137
VFH458 (VFH458Q) /CSM/VF/VFH4-C/VFH458Q.Seq.d/                         36   0.82
SLC520 (SLC520Q) /CSM/SL/SLC5-A/SLC520Q.Seq.d/                         36   0.82
SLB426 (SLB426Q) /CSM/SL/SLB4-B/SLB426Q.Seq.d/                         36   0.82
AFI118 (AFI118Q) /CSM/AF/AFI1-A/AFI118Q.Seq.d/                         36   0.82
VHQ471 (VHQ471Q) /CSM/VH/VHQ4-C/VHQ471Q.Seq.d/                         34   3.2
VHP830 (VHP830Q) /CSM/VH/VHP8-B/VHP830Q.Seq.d/                         34   3.2
VHP116 (VHP116Q) /CSM/VH/VHP1-A/VHP116Q.Seq.d/                         34   3.2
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX429287|BX429287.1 human full-length cDNA 5-PRIME end of clone CS0DE008YF17 of PLACENTA of Homo sapiens (human).    38  0.94  2
BI207192|BI207192.1 EST525232 cTOS Lycopersicon esculentum cDNA clone cTOS13I10 5' end, mRNA sequence.    34  2.2  2
BI205237|BI205237.1 EST523277 cTOS Lycopersicon esculentum cDNA clone cTOS7K8 5' end, mRNA sequence.    34  2.5  2
BI204450|BI204450.1 EST522490 cTOS Lycopersicon esculentum cDNA clone cTOS5E21 5' end, mRNA sequence.    34  2.6  2
AC063925|AC063925.9 Homo sapiens chromosome 3 clone RP11-129H12, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  2.7  1
AC012557|AC012557.23 Homo sapiens 3 BAC RP11-245J9 (Roswell...    44  2.7  1
AC092049|AC092049.1 Homo sapiens chromosome 3 clone RP11-245J9, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  2.7  1
BZ610166|BZ610166.1 WHABD55TR Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_1-7J14, DNA sequence.    44  2.7  1
BH983710|BH983710.1 odf14b10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    38  2.9  2
BI207358|BI207358.1 EST525398 cTOS Lycopersicon esculentum cDNA clone cTOS13H24 5' end, mRNA sequence.    34  2.9  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HD2) RecName: Full=Probable serine/threonine-protein kinase ...   104   3e-21
AF062069_1(AF062069|pid:none) Limulus polyphemus myosin III mRNA...    34   6.2
T31109(T31109)myosin III - Atlantic horseshoe crab                     34   6.2
protein update 2009. 3.26
PSORT 

 psg: 0.81  gvh: 0.41  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSK209 is nuc
5' end seq. ID VSK209F
5' end seq. 
>VSK209F.Seq
AAGACTAATGCCATTTGGTGGTTTCAATTTCCAAAGATTCCCAACAATCGTTGAAGGTGC
CAGAGCAAAAGGTTTACTAAAAAGCTTTTATGTTGAAGAAAAATCAGTTTCAAGAGCTCC
AAGTGTTTCATCTTTTAATATTCAAACTTCAACAATTAATAATAATAATAACAATAATAA
TAATAATAATAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATTNAACTGNAACTACAACTGCAACAAGTGTTTCAGCTTC
AAATTCTCCAACTATTTTATCAGCAAACAATAGTAATTTAAACATTTCGTCAAATAATTC
AAATCTTGGATCTAGTGGTGGTATACCATCCTCAAATTCTTCTTTGACTCCTAATAATAA
ATCAACCAGTCCTTCATCAGGACCAGNTTCCACTTTATTTAAAGGACCACTACTTAGAGT
TTCTTCAAAAAATTGTGTTCAATCAACAAACTCTTCCAAAAAATAAAAATCAAAAAAAAA
A----------
Length of 5' end seq. 541
3' end seq. ID VSK209Z
3' end seq. 
>VSK209Z.Seq
----------ACAACTGCAACAAGTGNTTCAGCTTCNAATTCTCCAACTATTTTATCAGC
NAACAANAGNAATTTTAACNTTTNGNCAAANAANTCAAATCTTGGATCTAGNGGNGGGAA
ACCATCCNCAAANTNTTCTTTGACNCCTAANAATAAAACNACCAGNCCTTNATCAGGNCC
NGTTTCCNCNTTATTTAAAGGNCCNCNACTTAGAGNTTNTTCNAAAAANTGNGNTCNAAC
AACAAACCCTCCNAAAAATAAAAATCNAAAAAAAAAAAAAA
Length of 3' end seq. 271
Connected seq. ID VSK209P
Connected seq. 
>VSK209P.Seq
AAGACTAATGCCATTTGGTGGTTTCAATTTCCAAAGATTCCCAACAATCGTTGAAGGTGC
CAGAGCAAAAGGTTTACTAAAAAGCTTTTATGTTGAAGAAAAATCAGTTTCAAGAGCTCC
AAGTGTTTCATCTTTTAATATTCAAACTTCAACAATTAATAATAATAATAACAATAATAA
TAATAATAATAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATTNAACTGNAACTACAACTGCAACAAGTGTTTCAGCTTC
AAATTCTCCAACTATTTTATCAGCAAACAATAGTAATTTAAACATTTCGTCAAATAATTC
AAATCTTGGATCTAGTGGTGGTATACCATCCTCAAATTCTTCTTTGACTCCTAATAATAA
ATCAACCAGTCCTTCATCAGGACCAGNTTCCACTTTATTTAAAGGACCACTACTTAGAGT
TTCTTCAAAAAATTGTGTTCAATCAACAAACTCTTCCAAAAAATAAAAATCAAAAAAAAA
A----------ACAACTGCAACAAGTGNTTCAGCTTCNAATTCTCCAACTATTTTATCAG
CNAACAANAGNAATTTTAACNTTTNGNCAAANAANTCAAATCTTGGATCTAGNGGNGGGA
AACCATCCNCAAANTNTTCTTTGACNCCTAANAATAAAACNACCAGNCCTTNATCAGGNC
CNGTTTCCNCNTTATTTAAAGGNCCNCNACTTAGAGNTTNTTCNAAAAANTGNGNTCNAA
CAACAAACCCTCCNAAAAATAAAAATCNAAAAAAAAAAAAAA
Length of connected seq. 812
Full length Seq ID -
Full length Seq. -
Length of full length seq. -