NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK207
Library VS
(Link to library)
Clone ID VSK207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15069-1
Original site URL
Representative seq. ID VSK207P
(Link to Original site)
Representative DNA sequence 
>VSK207 (VSK207Q) /CSM/VS/VSK2-A/VSK207Q.Seq.d/
TCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCTACGGTAACAA
ATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCTCAATGGCCAA
CGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAACTGATTGGTT
AGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCGTTAAAAAGAT
GGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTGCCAACTGTGG
TCAACTTTAAATTATCAACATATAGCTTTTTTATAATAATTAATAATAATAAAAAGAATT
GATTCAATTTTTTTTTGTANAAAAAAAAXXXXXXXXXXTCAAGGTGGTGACTTTACCATG
GGTAATGGTACTGGTGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAA
TTAAAACATTTCGGTCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGT
TCACAATTCTTTATCTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTC
GGTTTTGTCACTGAAGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCA
GGTAAAACTACCAAACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATA
TAGCTTTTTATAATAATTAATAATAAAAAAAGAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
srw*lyhg*wyww*inlr*qic**klqiktfrsrytlngqrwcqhqwftilylccsn*lv
rr*trcirfch*rygcr*kdgscwftir*nyqtsrhcqlwstlnyqhiafl**LIIIKRI
DSIFFCXKK---

---QGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPT
DWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL*iini*lfiiinnkk
r
Translated Amino Acid sequence (All Frames) 
Frame A:
srw*lyhg*wyww*inlr*qic**klqiktfrsrytlngqrwcqhqwftilylccsn*lv
rr*trcirfch*rygcr*kdgscwftir*nyqtsrhcqlwstlnyqhiafl**LIIIKRI
DSIFFCXKK---

---srw*lyhg*wyww*inlr*qic**klqiktfrsrytlngqrwcqhqwftilylccsn
*lvrr*trcirfch*rygcr*kdgscwftir*nyqtsrhcqlwstlnyqhiafynn***k
kn

Frame B:
qggdftmgngtggesiygnkfadenfklkhfgqgtlsmanagantngsqfficvaptdwl
dgkhvvfgfvtegmdvvkkmeaagsqsgkttkpvviancgql*iini*lfynn****kel
iqfffvxkk---

---QGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPT
DWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL*iini*lfiiinnkk
r

Frame C:
kvvtlpwvmvlvvnqstvtnllmktsn*nisvkvhsqwptlvptpmvhnslsvllqlig*
tvntlysvlslkvwmslkrwkllvhnqvklpnqsslptvvnfklstysffiiinnnkkn*
fnfflxkk---

---kvvtlpwvmvlvvnqstvtnllmktsn*nisvkvhsqwptlvptpmvhnslsvllql
ig*tvntlysvlslkvwmslkrwkllvhnqvklpnqsslptvvnfklstysfl**liikk
e
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK207 (VSK207Q) /CSM/VS/VSK2-A/VSK207Q.Seq.d/                        728   0.0
VSJ435 (VSJ435Q) /CSM/VS/VSJ4-B/VSJ435Q.Seq.d/                        728   0.0
VSE143 (VSE143Q) /CSM/VS/VSE1-B/VSE143Q.Seq.d/                        728   0.0
VSC526 (VSC526Q) /CSM/VS/VSC5-B/VSC526Q.Seq.d/                        728   0.0
VSA826 (VSA826Q) /CSM/VS/VSA8-B/VSA826Q.Seq.d/                        728   0.0
VSA728 (VSA728Q) /CSM/VS/VSA7-B/VSA728Q.Seq.d/                        728   0.0
VHG230 (VHG230Q) /CSM/VH/VHG2-B/VHG230Q.Seq.d/                        728   0.0
VHF401 (VHF401Q) /CSM/VH/VHF4-A/VHF401Q.Seq.d/                        728   0.0
SSK846 (SSK846Q) /CSM/SS/SSK8-B/SSK846Q.Seq.d/                        728   0.0
SSK338 (SSK338Q) /CSM/SS/SSK3-B/SSK338Q.Seq.d/                        728   0.0
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF123597|AF123597.1 Dictyostelium discoideum cyclophilin B (cypB) mRNA, complete cds.    68  8e-21  3
M60628|M60628.1 C.albicans peptidyl-propyl cis-trans isomerase (CYP1) gene, complete cds.    52  1e-17  4
AF053068|AF053068.1 Dictyostelium discoideum cyclophilin B (CypB) gene, complete cds.    58  3e-16  4
AX536868|AX536868.1 Sequence 469 from Patent WO02064766.          52  1e-15  3
BI817906|BI817906.1 G4-A12 Axolotl Lambda Zap Library Ambystoma mexicanum cDNA similar to Putative peptidylprolyl isomerase F (cyclophilin F), mRNA sequence.    70  5e-12  2
BI773129|BI773129.1 kq46c02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:CYPH_MAIZE P21569 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE ;, mRNA sequence.    68  6e-11  2
BI772908|BI772908.1 kp98h11.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25633 Q25633 CYCLOPHILIN OVCYP-2 ;, mRNA sequence.    68  7e-11  2
BI772907|BI772907.1 kp98g12.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25633 Q25633 CYCLOPHILIN OVCYP-2 ;, mRNA sequence.    68  7e-11  2
BI773105|BI773105.1 kq42c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:CYP7_CAEEL P52015 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 7 ;, mRNA sequence.    68  7e-11  2
BI772921|BI772921.1 kq04c05.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25633 Q25633 CYCLOPHILIN OVCYP-2 ;, mRNA sequence.    68  7e-11  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF133868_1(EF133868|pid:none) Alexandrium fundyense strain GT-CA...   145   1e-33
U47812_1(U47812|pid:none) Onchocerca volvulus cyclophilin Ovcyp-...   144   2e-33
AJ238310_1(AJ238310|pid:none) Lumbricus rubellus mRNA for cyclop...   144   2e-33
AY362759_1(AY362759|pid:none) Chlamys farreri cyclophilin A mRNA...   144   4e-33
(P34790) RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP18...   144   4e-33
EF532602_1(EF532602|pid:none) Pinus taeda putative cyclophilin (...   143   6e-33
EU953413_1(EU953413|pid:none) Zea mays clone 1409164 peptidyl-pr...   143   6e-33
EU401723_1(EU401723|pid:none) Capsicum annuum cyclophilin mRNA, ...   142   1e-32
EF134038_1(EF134038|pid:none) Perkinsus chesapeaki isolate Pch_c...   142   1e-32
EF208090_1(EF208090|pid:none) Aiptasia pallida cyclophilin mRNA,...   142   1e-32
protein update 2009. 3.26
PSORT 

 psg: 0.71  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VSK207 is cyt
5' end seq. ID VSK207F
5' end seq. 
>VSK207F.Seq
TCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCTACGGTAACAA
ATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCTCAATGGCCAA
CGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAACTGATTGGTT
AGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCGTTAAAAAGAT
GGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTGCCAACTGTGG
TCAACTTTAAATTATCAACATATAGCTTTTTTATAATAATTAATAATAATAAAAAGAATT
GATTCAATTTTTTTTTGTANAAAAAAAA----------
Length of 5' end seq. 388
3' end seq. ID VSK207Z
3' end seq. 
>VSK207Z.Seq
----------TCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCT
ACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCT
CAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAA
CTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCG
TTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTG
CCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTATAATAATTAATAATAAAA
AAAGAAT
Length of 3' end seq. 357
Connected seq. ID VSK207P
Connected seq. 
>VSK207P.Seq
TCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCTACGGTAACAA
ATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCTCAATGGCCAA
CGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAACTGATTGGTT
AGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCGTTAAAAAGAT
GGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTGCCAACTGTGG
TCAACTTTAAATTATCAACATATAGCTTTTTTATAATAATTAATAATAATAAAAAGAATT
GATTCAATTTTTTTTTGTANAAAAAAAA----------TCAAGGTGGTGACTTTACCATG
GGTAATGGTACTGGTGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAA
TTAAAACATTTCGGTCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGT
TCACAATTCTTTATCTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTC
GGTTTTGTCACTGAAGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCA
GGTAAAACTACCAAACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATA
TAGCTTTTTATAATAATTAATAATAAAAAAAGAAT
Length of connected seq. 745
Full length Seq ID -
Full length Seq. -
Length of full length seq. -