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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK202
Library VS
(Link to library)
Clone ID VSK202
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14972-1
Original site URL
Representative seq. ID VSK202P
(Link to Original site)
Representative DNA sequence 
>VSK202 (VSK202Q) /CSM/VS/VSK2-A/VSK202Q.Seq.d/
AAGAAATGAGATTAAAGGTTGCATGGAAAGATTTCAAATTTGTTATTCCAACTGGAAAGT
CAAATAAAATTTCAGATTTATTTAAAGAAATTGCCAACAAATTTGCAGCTTACTCAACAG
AAGAATTCATTGTTTCAGAATTAAAAACTTCTGATGGTTTTGTTATTTCACCACATTATT
TAGTCGAAGATGCTTTATTAGAAAATGATATTTTATTAGTTGTAGATTTTGAATCTTGGA
AAAATGAACAATTTAAATTATGTACAAAAAGTTTTGTATTATTTGCATTAGAAAATTTCC
AAGATGATAATAAATTAAGAGTTAATATTGGTTTAAATACATTAAATAAATTATTTGTAT
CAATTGGATTATATAATAAATTATATAGATTAGAATTATTTGATTCAGCAGATCTTAAAG
CATTCCATAAGGAAGGTGAACATCCAGTTACTCATTGGGAAGATGGTAAAGGTAATGATG
CAAAAGTAAXXXXXXXXXXGTGTCAATAGTGAACGTCTTCAACGTAGTCATCATTCATTA
CCAAATGAATTACATATTAAAATTTACATNTCATGATGACAAACAAAAATTGTAACCACC
ATTCCAGTATTTTACAAGAATAAAACTGAGGATCCAGTAACAATGACATTGAAAACTCGT
CAAGCTCGTGTTGAAAAACCAATCATTTTCTTCCAAACTGTTGATAACTTGGAAACCAAT
GTTCGTGGTTGGGTTCAAATTGTTACCGATAAAAGTGATGGTAAAAATATCTTCAATTTC
ACATCTATTTGTTCCAATAGCTCTCATTATATCTCTCAAGCTGCTTTACACTCTTTTGTC
TATGATGCAAAGAAAGAAAATCNAAAGAAATACAAAATCAAAAACTATTGTGCTAGTAAC
TCTGATTTCCAATTAGAAGTCTTTGCAAATGTAAACTTTGAAACCTCAAAAGTTGATTCC
CTTTGTTTCGAATTATCCGATAAAAAAGGTATCTCTAAATCTGTTAAATATTTCCCAATT
AAAAAACTAACTGAATAATTTAATTAAATTAAATTATTTTATTTATAAATAAAAATTTTA
AAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
EMRLKVAWKDFKFVIPTGKSNKISDLFKEIANKFAAYSTEEFIVSELKTSDGFVISPHYL
VEDALLENDILLVVDFESWKNEQFKLCTKSFVLFALENFQDDNKLRVNIGLNTLNKLFVS
IGLYNKLYRLELFDSADLKAFHKEGEHPVTHWEDGKGNDAKV---

---VSIVNVFNVVIIHYQMNYILKFTXHDDKQKL*ppfqyftriklriq*q*h*klvklv
lknqsfsskllitwkpmfvvgfkllpikvmvkissishlfvpialiislkllytllsmmq
rkkixrntksktivlvtlisn*kslqm*tlkpqklipfvsnypikkvslnllnisqlkn*
lnnliklnyfiyk*kf*
Translated Amino Acid sequence (All Frames) 
Frame A:
kk*d*rlhgkisnllfqlesqikfqiylkklptnlqltqqknslfqn*kllmvllfhhii
*skmly*kmify*l*ilnlgkmnnlnyvqkvlyylh*kiskmiin*elilv*ih*inyly
qldyiinyid*nyliqqilkhsirkvniqlligkmvkvmmqk*---

---VSIVNVFNVVIIHYQMNYILKFTXHDDKQKL*ppfqyftriklriq*q*h*klvklv
lknqsfsskllitwkpmfvvgfkllpikvmvkissishlfvpialiislkllytllsmmq
rkkixrntksktivlvtlisn*kslqm*tlkpqklipfvsnypikkvslnllnisqlkn*
lnnliklnyfiyk*kf*

Frame B:
rneikgcmerfqicysnwkvk*nfrfi*rncqqicsllnrrihcfriknf*wfcyfttlf
srrcfirk*yfiscrf*ilek*ti*imykkfciicirkfpr***iks*ywfkyik*iici
nwii**ii*irii*fsrs*sip*gr*tssyslgrw*r**cks---

---cq**tsst*ssfitk*ity*nlhxmmtnkncnhhssilqe*n*gssnndienssssc
*ktnhflpnc**lgnqcswlgsncyr*k*w*kylqfhiylfq*lslylsscftlfcl*ck
erkskeiqnqkllc**l*fpirslckckl*nlks*fplfriir*kryl*ic*ifpn*ktn
*ii*ln*iilfinknfk

Frame C:
EMRLKVAWKDFKFVIPTGKSNKISDLFKEIANKFAAYSTEEFIVSELKTSDGFVISPHYL
VEDALLENDILLVVDFESWKNEQFKLCTKSFVLFALENFQDDNKLRVNIGLNTLNKLFVS
IGLYNKLYRLELFDSADLKAFHKEGEHPVTHWEDGKGNDAKV---

---vnserlqrshhslpnelhikiyxs**qtkivttipvfyknktedpvtmtlktrqarv
ekpiiffqtvdnletnvrgwvqivtdksdgknifnftsicsnsshyisqaalhsfvydak
kenxkkykiknycasnsdfqlevfanvnfetskvdslcfelsdkkgisksvkyfpikklt
e*fn*iklfyl*ikiln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK202 (VSK202Q) /CSM/VS/VSK2-A/VSK202Q.Seq.d/                       1614   0.0
VFF580 (VFF580Q) /CSM/VF/VFF5-D/VFF580Q.Seq.d/                        969   0.0
SLA522 (SLA522Q) /CSM/SL/SLA5-A/SLA522Q.Seq.d/                        969   0.0
AFE281 (AFE281Q) /CSM/AF/AFE2-D/AFE281Q.Seq.d/                        969   0.0
SHH396 (SHH396Q) /CSM/SH/SHH3-D/SHH396Q.Seq.d/                         42   0.018
AHR354 (AHR354Q) /CSM/AH/AHR3-C/AHR354Q.Seq.d/                         42   0.018
AHC450 (AHC450Q) /CSM/AH/AHC4-C/AHC450Q.Seq.d/                         42   0.018
AHA577 (AHA577Q) /CSM/AH/AHA5-D/AHA577Q.Seq.d/                         42   0.018
VSD634 (VSD634Q) /CSM/VS/VSD6-B/VSD634Q.Seq.d/                         40   0.069
SHL410 (SHL410Q) /CSM/SH/SHL4-A/SHL410Q.Seq.d/                         40   0.069
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38  0.002  11
AC090149|AC090149.6 Homo sapiens chromosome 8, clone RP11-429M12, complete sequence.    44  0.002  5
AC090575|AC090575.11 Homo sapiens chromosome 8, clone RP11-480D6, complete sequence.    44  0.002  5
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36  0.004  13
AE015938|AE015938.1 Clostridium tetani E88, section 3 of 10 of the complete genome.    42  0.005  10
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32  0.021  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  0.026  11
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          38  0.030  12
AP003189|AP003189.2 Clostridium perfringens DNA, complete genome, section 5/10.    46  0.041  11
AC078801|AC078801.14 Homo sapiens chromosome 3 clone RP11-274D21, WORKING DRAFT SEQUENCE, 26 unordered pieces.    38  0.060  6
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM285338_9(AM285338|pid:none) Spiroplasma citri GII3-3X chromoso...    42   0.035
AM285307_1(AM285307|pid:none) Spiroplasma citri GII3-3X chromoso...    42   0.035
CU179680_622(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    38   0.66
AE017244_643(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c...    38   0.66
AE017243_622(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp...    36   2.5
AE017143_988(AE017143|pid:none) Haemophilus ducreyi strain 35000...    35   3.3
AL844507_101(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   7.3
CP000879_1573(CP000879|pid:none) Petrotoga mobilis SJ95, complet...    34   9.6
CP001140_401(CP001140|pid:none) Desulfurococcus kamchatkensis 12...    34   9.6
AC117076_37(AC117076|pid:none) Dictyostelium discoideum chromoso...    34   9.6
protein update 2009. 3.26
PSORT 

 psg: 0.82  gvh: 0.24  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSK202 is nuc
5' end seq. ID VSK202F
5' end seq. 
>VSK202F.Seq
AAGAAATGAGATTAAAGGTTGCATGGAAAGATTTCAAATTTGTTATTCCAACTGGAAAGT
CAAATAAAATTTCAGATTTATTTAAAGAAATTGCCAACAAATTTGCAGCTTACTCAACAG
AAGAATTCATTGTTTCAGAATTAAAAACTTCTGATGGTTTTGTTATTTCACCACATTATT
TAGTCGAAGATGCTTTATTAGAAAATGATATTTTATTAGTTGTAGATTTTGAATCTTGGA
AAAATGAACAATTTAAATTATGTACAAAAAGTTTTGTATTATTTGCATTAGAAAATTTCC
AAGATGATAATAAATTAAGAGTTAATATTGGTTTAAATACATTAAATAAATTATTTGTAT
CAATTGGATTATATAATAAATTATATAGATTAGAATTATTTGATTCAGCAGATCTTAAAG
CATTCCATAAGGAAGGTGAACATCCAGTTACTCATTGGGAAGATGGTAAAGGTAATGATG
CAAAAGTAA----------
Length of 5' end seq. 489
3' end seq. ID VSK202Z
3' end seq. 
>VSK202Z.Seq
----------GTGTCAATAGTGAACGTCTTCAACGTAGTCATCATTCATTACCAAATGAA
TTACATATTAAAATTTACATNTCATGATGACAAACAAAAATTGTAACCACCATTCCAGTA
TTTTACAAGAATAAAACTGAGGATCCAGTAACAATGACATTGAAAACTCGTCAAGCTCGT
GTTGAAAAACCAATCATTTTCTTCCAAACTGTTGATAACTTGGAAACCAATGTTCGTGGT
TGGGTTCAAATTGTTACCGATAAAAGTGATGGTAAAAATATCTTCAATTTCACATCTATT
TGTTCCAATAGCTCTCATTATATCTCTCAAGCTGCTTTACACTCTTTTGTCTATGATGCA
AAGAAAGAAAATCNAAAGAAATACAAAATCAAAAACTATTGTGCTAGTAACTCTGATTTC
CAATTAGAAGTCTTTGCAAATGTAAACTTTGAAACCTCAAAAGTTGATTCCCTTTGTTTC
GAATTATCCGATAAAAAAGGTATCTCTAAATCTGTTAAATATTTCCCAATTAAAAAACTA
ACTGAATAATTTAATTAAATTAAATTATTTTATTTATAAATAAAAATTTTAAAT
Length of 3' end seq. 584
Connected seq. ID VSK202P
Connected seq. 
>VSK202P.Seq
AAGAAATGAGATTAAAGGTTGCATGGAAAGATTTCAAATTTGTTATTCCAACTGGAAAGT
CAAATAAAATTTCAGATTTATTTAAAGAAATTGCCAACAAATTTGCAGCTTACTCAACAG
AAGAATTCATTGTTTCAGAATTAAAAACTTCTGATGGTTTTGTTATTTCACCACATTATT
TAGTCGAAGATGCTTTATTAGAAAATGATATTTTATTAGTTGTAGATTTTGAATCTTGGA
AAAATGAACAATTTAAATTATGTACAAAAAGTTTTGTATTATTTGCATTAGAAAATTTCC
AAGATGATAATAAATTAAGAGTTAATATTGGTTTAAATACATTAAATAAATTATTTGTAT
CAATTGGATTATATAATAAATTATATAGATTAGAATTATTTGATTCAGCAGATCTTAAAG
CATTCCATAAGGAAGGTGAACATCCAGTTACTCATTGGGAAGATGGTAAAGGTAATGATG
CAAAAGTAA----------GTGTCAATAGTGAACGTCTTCAACGTAGTCATCATTCATTA
CCAAATGAATTACATATTAAAATTTACATNTCATGATGACAAACAAAAATTGTAACCACC
ATTCCAGTATTTTACAAGAATAAAACTGAGGATCCAGTAACAATGACATTGAAAACTCGT
CAAGCTCGTGTTGAAAAACCAATCATTTTCTTCCAAACTGTTGATAACTTGGAAACCAAT
GTTCGTGGTTGGGTTCAAATTGTTACCGATAAAAGTGATGGTAAAAATATCTTCAATTTC
ACATCTATTTGTTCCAATAGCTCTCATTATATCTCTCAAGCTGCTTTACACTCTTTTGTC
TATGATGCAAAGAAAGAAAATCNAAAGAAATACAAAATCAAAAACTATTGTGCTAGTAAC
TCTGATTTCCAATTAGAAGTCTTTGCAAATGTAAACTTTGAAACCTCAAAAGTTGATTCC
CTTTGTTTCGAATTATCCGATAAAAAAGGTATCTCTAAATCTGTTAAATATTTCCCAATT
AAAAAACTAACTGAATAATTTAATTAAATTAAATTATTTTATTTATAAATAAAAATTTTA
AAT
Length of connected seq. 1073
Full length Seq ID -
Full length Seq. -
Length of full length seq. -