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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK196
Library VS
(Link to library)
Clone ID VSK196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10274-1
Original site URL
Representative seq. ID VSK196P
(Link to Original site)
Representative DNA sequence 
>VSK196 (VSK196Q) /CSM/VS/VSK1-D/VSK196Q.Seq.d/
ATAAAGATGGAAAATTAGTTTCTTTAAAAGATTTCATTAAAGATCAAAAACCAATTGTAT
TATATTTTTACCCAAAGGATGAAACTTCTATTTGCACTAAAGAGGCTTGTGAATTCAGAG
ATAAATATCAAAAGTTTATTGAAGCAGGTGCAGATGTTATTGGTGTCANTNNANATGATG
CAGAAAGTCATTCAAAATTCACATCAAAATATTCATTGCCATTCACATTATCNACTGATA
AAGGTGGTGAATTAGCTAAATTATATGGTGCTGAAGGTAACTTTTTATCACCTGGTAGAG
TCACTTTTATTATTGACAAAAATGGAAAAGTAGCTCTAAATCATTCAGCTTTATTAAGTG
CAACATCACACATTGAAGAATCTTTAAAAGTTATTGAACAATTAAAATAAAATAAAATAA
ANTXXXXXXXXXXCAAAATTAAAAGTTGGTGACCAAGCTCCAGATTTCACATGTCCAGAT
AAAGATGGAAAATTAGTTTCTTTAAAAGATTTCATTAAAGATCAAAAACCAATTGTATTA
TATTTTTACCCAAAGGATGAAACTTCTATTTGCACTAAAGAGGCTTGTGAATTCAGAGAT
AAATATCAAAAGTTTATTGAAGCAGGTGCAGATGTTATTGGTGTCAGTAGAGATGATGCA
GAAAGTCATTCAAAATTCACATCAAAATATTCATTGCCATTCACATTATTAACTGATAAA
GGTGGTGAATTAGCTAAATTATATGGTGCTGAAGGTAACTTTTTATCACCTGGTAGAGTC
ACTTTTATTATTGACAAAAATGGAAAAGTAGCTCTAAATCATTCAGCTTTATTAAGTGCA
ACATCACACATTGAAGANCTTAAAAGTTATNAACAATTAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
kdgklvslkdfikdqkpivlyfypkdetsictkeacefrdkyqkfieagadvigvxxxda
eshskftskyslpftlstdkggelaklygaegnflspgrvtfiidkngkvalnhsallsa
tshieeslkvieqlk*NKIX---

---KLKVGDQAPDFTCPDKDGKLVSLKDFIKDQKPIVLYFYPKDETSICTKEACEFRDKY
QKFIEAGADVIGVSRDDAESHSKFTSKYSLPFTLLTDKGGELAKLYGAEGNFLSPGRVTF
IIDKNGKVALNHSALLSATSHIEXLKSYXQLKK
Translated Amino Acid sequence (All Frames) 
Frame A:
ikmen*fl*kislkiknqlyyiftqrmkllfalkrlvnseiniksllkqvqmllvsxxmm
qkviqnshqnihchshyxlikvvn*lnymvlkvtfyhlveslllltkmek*l*iiqly*v
qhhtlknl*kllnn*nkik*x---

---qn*klvtklqishvqikmen*fl*kislkiknqlyyiftqrmkllfalkrlvnsein
iksllkqvqmllvsvemmqkviqnshqnihchshy*likvvn*lnymvlkvtfyhlvesl
llltkmek*l*iiqly*vqhhtlkxlkvxnn*kk

Frame B:
*rwkisffkrfh*rsktnciiflpkg*nfylh*rgl*iqr*iskvy*srcrcywcxxx*c
rksfkihikifiaihiix**rw*is*iiwc*r*lfitw*shfyy*qkwksssksfsfikc
nith*rifksy*tikik*nk---

---kiksw*pssrfhmsr*rwkisffkrfh*rsktnciiflpkg*nfylh*rgl*iqr*i
skvy*srcrcywcq*r*crksfkihikifiaihiin**rw*is*iiwc*r*lfitw*shf
yy*qkwksssksfsfikcnith*rx*klxtikk

Frame C:
kdgklvslkdfikdqkpivlyfypkdetsictkeacefrdkyqkfieagadvigvxxxda
eshskftskyslpftlstdkggelaklygaegnflspgrvtfiidkngkvalnhsallsa
tshieeslkvieqlk*NKIX---

---KLKVGDQAPDFTCPDKDGKLVSLKDFIKDQKPIVLYFYPKDETSICTKEACEFRDKY
QKFIEAGADVIGVSRDDAESHSKFTSKYSLPFTLLTDKGGELAKLYGAEGNFLSPGRVTF
IIDKNGKVALNHSALLSATSHIEXLKSYXQLKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK196 (VSK196Q) /CSM/VS/VSK1-D/VSK196Q.Seq.d/                       1633   0.0
VSD874 (VSD874Q) /CSM/VS/VSD8-D/VSD874Q.Seq.d/                        841   0.0
SSK877 (SSK877Q) /CSM/SS/SSK8-D/SSK877Q.Seq.d/                        841   0.0
SSE778 (SSE778Q) /CSM/SS/SSE7-D/SSE778Q.Seq.d/                        841   0.0
SSJ414 (SSJ414Q) /CSM/SS/SSJ4-A/SSJ414Q.Seq.d/                        835   0.0
SSB709 (SSB709Q) /CSM/SS/SSB7-A/SSB709Q.Seq.d/                        809   0.0
VSC210 (VSC210Q) /CSM/VS/VSC2-A/VSC210Q.Seq.d/                         68   2e-10
VFK266 (VFK266Q) /CSM/VF/VFK2-C/VFK266Q.Seq.d/                         68   2e-10
VSI387 (VSI387Q) /CSM/VS/VSI3-D/VSI387Q.Seq.d/                         44   0.004
VSG329 (VSG329Q) /CSM/VS/VSG3-B/VSG329Q.Seq.d/                         44   0.004
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    68  9e-18  7
AC115132|AC115132.6 Rattus norvegicus clone CH230-108K6, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48  0.003  4
AC084363|AC084363.8 Homo sapiens chromosome 12q clone RP11-625I23, WORKING DRAFT SEQUENCE, 40 unordered pieces.    44  0.004  4
AE015938|AE015938.1 Clostridium tetani E88, section 3 of 10 of the complete genome.    36  0.009  11
AL035089|AL035089.21 Human DNA sequence from clone RP5-1030M6 on chromosome 20q12-13.2. Contains STSs, GSSs and two putative CpG islands.    40  0.010  4
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    44  0.011  8
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    38  0.013  8
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    44  0.014  8
AC037464|AC037464.2 Homo sapiens chromosome 6 clone RP11-195B5 map 6, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  0.014  2
AC111930|AC111930.4 Rattus norvegicus clone CH230-154D3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48  0.017  3
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_28(AC115598|pid:none) Dictyostelium discoideum chromoso...   193   5e-48
CP000117_3860(CP000117|pid:none) Anabaena variabilis ATCC 29413,...   159   1e-37
AP008231_2152(AP008231|pid:none) Synechococcus elongatus PCC 630...   152   1e-35
(Q9LU86) RecName: Full=Peroxiredoxin Q, chloroplastic;          ...   147   4e-34
CP001344_3442(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...   145   2e-33
BT051537_1(BT051537|pid:none) Medicago truncatula clone MTYF1_F2...   144   4e-33
EF083780_1(EF083780|pid:none) Picea sitchensis clone WS02720_H21...   143   8e-33
CP001291_4924(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...   143   8e-33
EF084656_1(EF084656|pid:none) Picea sitchensis clone WS02722_E06...   143   8e-33
AM746676_4625(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   142   1e-32
protein update 2009. 3.26
PSORT 

 psg: 0.70  gvh: 0.28  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSK196 is nuc
5' end seq. ID VSK196F
5' end seq. 
>VSK196F.Seq
ATAAAGATGGAAAATTAGTTTCTTTAAAAGATTTCATTAAAGATCAAAAACCAATTGTAT
TATATTTTTACCCAAAGGATGAAACTTCTATTTGCACTAAAGAGGCTTGTGAATTCAGAG
ATAAATATCAAAAGTTTATTGAAGCAGGTGCAGATGTTATTGGTGTCANTNNANATGATG
CAGAAAGTCATTCAAAATTCACATCAAAATATTCATTGCCATTCACATTATCNACTGATA
AAGGTGGTGAATTAGCTAAATTATATGGTGCTGAAGGTAACTTTTTATCACCTGGTAGAG
TCACTTTTATTATTGACAAAAATGGAAAAGTAGCTCTAAATCATTCAGCTTTATTAAGTG
CAACATCACACATTGAAGAATCTTTAAAAGTTATTGAACAATTAAAATAAAATAAAATAA
ANT----------
Length of 5' end seq. 423
3' end seq. ID VSK196Z
3' end seq. 
>VSK196Z.Seq
----------CAAAATTAAAAGTTGGTGACCAAGCTCCAGATTTCACATGTCCAGATAAA
GATGGAAAATTAGTTTCTTTAAAAGATTTCATTAAAGATCAAAAACCAATTGTATTATAT
TTTTACCCAAAGGATGAAACTTCTATTTGCACTAAAGAGGCTTGTGAATTCAGAGATAAA
TATCAAAAGTTTATTGAAGCAGGTGCAGATGTTATTGGTGTCAGTAGAGATGATGCAGAA
AGTCATTCAAAATTCACATCAAAATATTCATTGCCATTCACATTATTAACTGATAAAGGT
GGTGAATTAGCTAAATTATATGGTGCTGAAGGTAACTTTTTATCACCTGGTAGAGTCACT
TTTATTATTGACAAAAATGGAAAAGTAGCTCTAAATCATTCAGCTTTATTAAGTGCAACA
TCACACATTGAAGANCTTAAAAGTTATNAACAATTAAAAAAAA
Length of 3' end seq. 453
Connected seq. ID VSK196P
Connected seq. 
>VSK196P.Seq
ATAAAGATGGAAAATTAGTTTCTTTAAAAGATTTCATTAAAGATCAAAAACCAATTGTAT
TATATTTTTACCCAAAGGATGAAACTTCTATTTGCACTAAAGAGGCTTGTGAATTCAGAG
ATAAATATCAAAAGTTTATTGAAGCAGGTGCAGATGTTATTGGTGTCANTNNANATGATG
CAGAAAGTCATTCAAAATTCACATCAAAATATTCATTGCCATTCACATTATCNACTGATA
AAGGTGGTGAATTAGCTAAATTATATGGTGCTGAAGGTAACTTTTTATCACCTGGTAGAG
TCACTTTTATTATTGACAAAAATGGAAAAGTAGCTCTAAATCATTCAGCTTTATTAAGTG
CAACATCACACATTGAAGAATCTTTAAAAGTTATTGAACAATTAAAATAAAATAAAATAA
ANT----------CAAAATTAAAAGTTGGTGACCAAGCTCCAGATTTCACATGTCCAGAT
AAAGATGGAAAATTAGTTTCTTTAAAAGATTTCATTAAAGATCAAAAACCAATTGTATTA
TATTTTTACCCAAAGGATGAAACTTCTATTTGCACTAAAGAGGCTTGTGAATTCAGAGAT
AAATATCAAAAGTTTATTGAAGCAGGTGCAGATGTTATTGGTGTCAGTAGAGATGATGCA
GAAAGTCATTCAAAATTCACATCAAAATATTCATTGCCATTCACATTATTAACTGATAAA
GGTGGTGAATTAGCTAAATTATATGGTGCTGAAGGTAACTTTTTATCACCTGGTAGAGTC
ACTTTTATTATTGACAAAAATGGAAAAGTAGCTCTAAATCATTCAGCTTTATTAAGTGCA
ACATCACACATTGAAGANCTTAAAAGTTATNAACAATTAAAAAAAA
Length of connected seq. 876
Full length Seq ID -
Full length Seq. -
Length of full length seq. -