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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK168
Library VS
(Link to library)
Clone ID VSK168
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07057-1
Original site URL
Representative seq. ID VSK168E
(Link to Original site)
Representative DNA sequence 
>VSK168 (VSK168Q) /CSM/VS/VSK1-C/VSK168Q.Seq.d/
ACGCGTCCGCTTACAATAATNATAATAACTGATATAGAGCTATTCATTTGGTATGTTAGC
GATATTAGGTCCATTCATATCTACCCTTCAAACTGAAAGTGATATATTCTTTTGTTTTGC
TGCAATGATGAAAAAAATTGAAGAGAATTTACAAAATGAAAGTTTAACTTTAAAATTATC
AAGATTTATAATGTATTTTAGATCTGTATTACCAGAATTATTTAGTCATTTTGAAGAAGA
AGAAATTAATAGTAATGATTGGGCAACAAGTTGGATTCAAAATTATTTATCATGTGAATT
ACCAATTGAATGTACACTTAGATTATGGGATACTTATTCTGTCTGGTAGATTAGGTTCTG
GATTTACATGTTTATGTTTGTTTAGCAATTNTAACAAATTTCTCTGAAGAATTATTAGAA
TTGGAACATAGTGAAATCTTATCTTTTCTTCAACATTTACCTGGTATTGATATTGATCAA
ATTATAGCTCAAGCTTATAATATTTTTGATGATATTAGAGCTAATAATGAATTATAAAAT
AAATAAAATAAAAATAAAAAAAATAAAAATAAATNAATAA
sequence update 2001. 3.26
Translated Amino Acid sequence 
rvrlq*x**li*SYSFGMLAILGPFISTLQTESDIFFCFAAMMKKIEENLQNESLTLKLS
RFIMYFRSVLPELFSHFEEEEINSNDWATSWIQNYLSCELPIECTLRLWDTYSVW*irfw
iymfmfv*qx*qislkny*nwnivksylffniylvlilikl*lkliiflmilelimnyki
nkikikkikinx*
Translated Amino Acid sequence (All Frames) 
Frame A:
trpltixiitdielfiwyvsdirsihiypsn*k*yillfccndekn*reftk*kfnfkii
kiynvf*icitrii*sf*rrrn****lgnkldsklfim*itn*myt*imgylfclvd*vl
dlhvyvclaixtnfseellelehseilsflqhlpgididqiiaqaynifddirannel*n
k*nknkknknkxi


Frame B:
rvrlq*x**li*SYSFGMLAILGPFISTLQTESDIFFCFAAMMKKIEENLQNESLTLKLS
RFIMYFRSVLPELFSHFEEEEINSNDWATSWIQNYLSCELPIECTLRLWDTYSVW*irfw
iymfmfv*qx*qislkny*nwnivksylffniylvlilikl*lkliiflmilelimnyki
nkikikkikinx*


Frame C:
asaynnxnn*yraihlvc*ry*vhsylpfklkviysfvllq**kklkriykmkv*l*nyq
dl*cildlyyqnylvilkkkklivmigqqvgfkiiyhvnyqlnvhldygililsgrlgsg
ftclclfsnxnkfl*riirigt**nlifsstftwy*y*snysssl*yf**y*s***iik*
ik*k*kk*k*xn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK168 (VSK168Q) /CSM/VS/VSK1-C/VSK168Q.Seq.d/                       1003   0.0
VFJ613 (VFJ613Q) /CSM/VF/VFJ6-A/VFJ613Q.Seq.d/                         38   0.14
VHP301 (VHP301Q) /CSM/VH/VHP3-A/VHP301Q.Seq.d/                         36   0.57
VHM466 (VHM466Q) /CSM/VH/VHM4-C/VHM466Q.Seq.d/                         36   0.57
VHL821 (VHL821Q) /CSM/VH/VHL8-A/VHL821Q.Seq.d/                         36   0.57
VHD733 (VHD733Q) /CSM/VH/VHD7-B/VHD733Q.Seq.d/                         36   0.57
VHB843 (VHB843Q) /CSM/VH/VHB8-B/VHB843Q.Seq.d/                         36   0.57
VHB708 (VHB708Q) /CSM/VH/VHB7-A/VHB708Q.Seq.d/                         36   0.57
VHB218 (VHB218Q) /CSM/VH/VHB2-A/VHB218Q.Seq.d/                         36   0.57
VHA883 (VHA883Q) /CSM/VH/VHA8-D/VHA883Q.Seq.d/                         36   0.57
own update 2004. 6. 2
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5.    38  0.011  7
AC110714|AC110714.5 Rattus norvegicus clone CH230-168F19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.19  4
BX539324|BX539324.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38  0.24  3
BX255911|BX255911.7 Zebrafish DNA sequence from clone DKEY-274C14 in linkage group 20.    42  0.30  3
BX119967|BX119967.4 Mouse DNA sequence from clone RP23-362M13 on chromosome X.    36  0.44  3
AL593854|AL593854.6 Human DNA sequence from clone RP11-423B13 on chromosome 6.    42  0.75  4
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  0.80  4
AL080277|AL080277.12 Human DNA sequence from clone 308E17 on chromosome 6q22.1-22.3 Contains STSs and GSSs.    42  0.99  5
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    34  0.99  8
AC107301|AC107301.10 Homo sapiens 3 BAC RP11-544A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  1.2  7
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_281(AE017341|pid:none) Cryptococcus neoformans var. neo...    56   6e-07
BC060066_1(BC060066|pid:none) Mus musculus TBC1 domain family, m...    55   1e-06
(Q9NU19) RecName: Full=TBC1 domain family member 22B;  &AB449909...    54   3e-06
BC142187_1(BC142187|pid:none) Bos taurus TBC1 domain family, mem...    54   3e-06
AY129013_1(AY129013|pid:none) Homo sapiens clone FP17814 unknown...    54   3e-06
AK300007_1(AK300007|pid:none) Homo sapiens cDNA FLJ55654 complet...    54   3e-06
BC002720_1(BC002720|pid:none) Homo sapiens TBC1 domain family, m...    54   3e-06
(Q9HA65) RecName: Full=TBC1 domain family member 17;  &AK022230_...    54   3e-06
CR855616_1(CR855616|pid:none) Xenopus tropicalis finished cDNA, ...    53   5e-06
BC001292_1(BC001292|pid:none) Homo sapiens TBC1 domain family, m...    53   6e-06
protein update 2009. 3.26
PSORT 

 psg: 0.96  gvh: 0.57  alm: 0.39  top: 0.47  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSK168 is cyt
5' end seq. ID VSK168F
5' end seq. 
>VSK168F.Seq
ACGCGTCCGCTTACANTAATCATAATAACTGATNTAGAGCTATTCATTTGGTATGTTAGC
GATATTAGGTCCATTCATATCTACCCTTCAAACTGAAAGTGATATATNCTTTTGTTNTGC
TGCANTGATGAAAAAAATTGAAGAGAATTTACAAAATGAAAGTTTAACTTTAAAANTATC
AAGATTTATAATGTATTTTAGATCTGTATTACCAGANTTATTTAGTCATTTTGAAGAAGA
AGAAATTAATAGTAATGATTGGGCAACAAGTTGGATTCAAAATTATTTATCATGTGAATT
ACCAATTGAATGTACACTTAGATTATGGGATACTTATTCTGNCTGGTAGATTAGGTTCTG
GATTTACATGTTTATGTTNGTTTAGCAATTCTAACAAATNTCTCTGAAGAATTATTAGAA
TTGGAACATAGTGAAATCTTATCTTTNCTTCAACATTTACCTGGTATTGATATTGATCAA
ATTATAGCTCAAG----------
Length of 5' end seq. 493
3' end seq. ID VSK168Z
3' end seq. 
>VSK168Z.Seq
----------CTTACAATAATTATAATAATGATATAGAGTATTCATTTGGTATGTTAGCG
ATATTAGGTCCATTCATATCTACCCTTCAAACTGAAAGTGATATATTCTTTTGTTTTGCT
GCAATGATGAAAAAAATTGAAGAGAATTTACAAAATGAAAGTTTAACTTTAAAATTATCA
AGATTTATAATGTATTTTAGATCTGTATTACCAGAATTATTTAGTCATTTTGAAGAAGAA
GAAATTAATAGTAATGATTGGGCAACAAGTTGGATTCAAAATTATTTATCATGTGAATTA
CCAATTGAATGTACACTTAGATTATGGGATACTTATTTGTCTGGTAGATTAGGTTTGGAT
TTACATGTTTATGTTTGTTTAGCAATTTTAACAAATTTCTCTGAAGAATTATTAGAATTG
GAACATAGTGAAATCTTATCTTTTCTTCAACATTTACCTGGTATTGATATTGATCAAATT
ATAGCTCAAGCTTATAATATTTTTGATGATATTAGAGCTAATAATGAATTATAAAATAAA
TAAAATAAAAATAAAAAAAATAAAAATAAATNAATAA
Length of 3' end seq. 567
Connected seq. ID VSK168P
Connected seq. 
>VSK168P.Seq
ACGCGTCCGCTTACANTAATCATAATAACTGATNTAGAGCTATTCATTTGGTATGTTAGC
GATATTAGGTCCATTCATATCTACCCTTCAAACTGAAAGTGATATATNCTTTTGTTNTGC
TGCANTGATGAAAAAAATTGAAGAGAATTTACAAAATGAAAGTTTAACTTTAAAANTATC
AAGATTTATAATGTATTTTAGATCTGTATTACCAGANTTATTTAGTCATTTTGAAGAAGA
AGAAATTAATAGTAATGATTGGGCAACAAGTTGGATTCAAAATTATTTATCATGTGAATT
ACCAATTGAATGTACACTTAGATTATGGGATACTTATTCTGNCTGGTAGATTAGGTTCTG
GATTTACATGTTTATGTTNGTTTAGCAATTCTAACAAATNTCTCTGAAGAATTATTAGAA
TTGGAACATAGTGAAATCTTATCTTTNCTTCAACATTTACCTGGTATTGATATTGATCAA
ATTATAGCTCAAG----------CTTACAATAATTATAATAATGATATAGAGTATTCATT
TGGTATGTTAGCGATATTAGGTCCATTCATATCTACCCTTCAAACTGAAAGTGATATATT
CTTTTGTTTTGCTGCAATGATGAAAAAAATTGAAGAGAATTTACAAAATGAAAGTTTAAC
TTTAAAATTATCAAGATTTATAATGTATTTTAGATCTGTATTACCAGAATTATTTAGTCA
TTTTGAAGAAGAAGAAATTAATAGTAATGATTGGGCAACAAGTTGGATTCAAAATTATTT
ATCATGTGAATTACCAATTGAATGTACACTTAGATTATGGGATACTTATTTGTCTGGTAG
ATTAGGTTTGGATTTACATGTTTATGTTTGTTTAGCAATTTTAACAAATTTCTCTGAAGA
ATTATTAGAATTGGAACATAGTGAAATCTTATCTTTTCTTCAACATTTACCTGGTATTGA
TATTGATCAAATTATAGCTCAAGCTTATAATATTTTTGATGATATTAGAGCTAATAATGA
ATTATAAAATAAATAAAATAAAAATAAAAAAAATAAAAATAAATNAATAA
Length of connected seq. 1060
Full length Seq ID VSK168E
Full length Seq. 
>VSK168E.Seq
ACGCGTCCGCTTACAATAATNATAATAACTGATATAGAGCTATTCATTTGGTATGTTAGC
GATATTAGGTCCATTCATATCTACCCTTCAAACTGAAAGTGATATATTCTTTTGTTTTGC
TGCAATGATGAAAAAAATTGAAGAGAATTTACAAAATGAAAGTTTAACTTTAAAATTATC
AAGATTTATAATGTATTTTAGATCTGTATTACCAGAATTATTTAGTCATTTTGAAGAAGA
AGAAATTAATAGTAATGATTGGGCAACAAGTTGGATTCAAAATTATTTATCATGTGAATT
ACCAATTGAATGTACACTTAGATTATGGGATACTTATTCTGTCTGGTAGATTAGGTTCTG
GATTTACATGTTTATGTTTGTTTAGCAATTNTAACAAATTTCTCTGAAGAATTATTAGAA
TTGGAACATAGTGAAATCTTATCTTTTCTTCAACATTTACCTGGTATTGATATTGATCAA
ATTATAGCTCAAGCTTATAATATTTTTGATGATATTAGAGCTAATAATGAATTATAAAAT
AAATAAAATAAAAATAAAAAAAATAAAAATAAATNAATAA
Length of full length seq. 580