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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK166
Library VS
(Link to library)
Clone ID VSK166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15097-1
Original site URL
Representative seq. ID VSK166P
(Link to Original site)
Representative DNA sequence 
>VSK166 (VSK166Q) /CSM/VS/VSK1-C/VSK166Q.Seq.d/
ATAGTTGTATACGTTTATTTAATCAAAATATTAGTGGAAACATCACTAGATCAATTTCCA
ATTTTAAAAAGCATTCACCAAGATCCAAACTCACTAGATGTATCCTTTCAAATGGTGCAA
CAATTAGATATTGGACATCACTTCCAATGTCAGAAACTTGGAGATGTGAAACAGATATAT
TCAATAATCCACCAGAATATGTAATGGATAATATCCAAAAAATTAAAGAAAAAAGAAAAT
CAGATTTAGATGAAAGATTCAGACAATACAAAAAATAAACAAAAATTAAAATCAATTACA
AACATTTAATAATAATAATAATAATAATAAAATCATATGATATCGTTTCAAAAATATTAT
TACCACCAACATACTTCGATAACAATGTAATAACATATCATAAATTAAAACAAACAATAA
AAAAAATAAATAAAAAAAAAGTGAAAAAAAAAAGGATTAAAATTATTAGGAATAATTNTA
ATAAAAAAAAAAXXXXXXXXXXAGTTGTATACGTTTATTTAATCAAAATATTAGTGGAAA
CATCACTAGATCAATTTCCAATTTTAAAAAGCATTCACCAAGATCCAAACTCACTAGATG
TATCCTTTCAAATGGTGCAACAATTANATATTGGACATCACTTNCAATGTCANAAACTTG
GAGATGTGNAACANATATATTCAATAATCCACCANAATATGTAATGGATAATATCCAAAA
AATTAAAGAAAAAANAAAATCAGATTTAGATGAAAGATTCAGNCAATACAAAAAATAAAC
AAAAATTAAAATCAATTACNAACNTTTAATAATAATAATAATAATAATAAAATCATATGA
TATCGTTTCAAAAANATTATTACCNCCAACATACTTCGATAACAATGTAATAACATATCA
TAAATTNAAACAAACAATAAAAAAAATNAATAAAAAAAAAGTTAAAAAAAAAAGGNATTA
AAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
scirlfnqnisgnitrsisnfkkhsprskltrcilsngatirywtslpmsetwrcetdif
nnppeyvmdniqkikekrksdlderfrqykk*TKIKINYKHLIIIIIIIKSYDIVSKILL
PPTYFDNNVITYHKLKQTIKKINKKKVKKKRIKIIRNNXNKKK---

---SCIRLFNQNISGNITRSISNFKKHSPRSKLTRCILSNGATIXYWTSLXMSXTWRCXT
XIFNNPPXYVMDNIQKIKEKXKSDLDERFXQYKK*tkikinyxxliiiiiiiksydivsk
xllpptyfdnnvityhkxkqtikkxnkkkvkkkrx*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvyvylikilvetsldqfpilksihqdpnsldvsfqmvqqldighhfqcqklgdvkqiy
siihqnm*wiiskklkkkenqi*mkdsdntknkqklksitni********nhmisfqkyy
yhqhtsitm**hiin*nkq*kk*ikkk*kkkglkllgiixikkk---

---SCIRLFNQNISGNITRSISNFKKHSPRSKLTRCILSNGATIXYWTSLXMSXTWRCXT
XIFNNPPXYVMDNIQKIKEKXKSDLDERFXQYKK*tkikinyxxliiiiiiiksydivsk
xllpptyfdnnvityhkxkqtikkxnkkkvkkkrx*k

Frame B:
*lytfi*sky*wkhh*infqf*kaftkiqth*mypfkwcnn*ilditsnvrnlem*nryi
q*stricng*ypkn*rkkkirfr*kiqtiqkinkn*nqlqtfnnnnnnnkii*yrfknii
ttnilr*qcnnis*iktnnkknk*kksekkkd*ny*e*x**kk---

---vvyvylikilvetsldqfpilksihqdpnsldvsfqmvqqlxighhxqcxklgdvxx
iysiihxnm*wiiskklkkkxnqi*mkdsxntknkqklksitnx********nhmisfqk
xyyxqhtsitm**hiinxnkq*kkxikkklkkkgikk

Frame C:
scirlfnqnisgnitrsisnfkkhsprskltrcilsngatirywtslpmsetwrcetdif
nnppeyvmdniqkikekrksdlderfrqykk*TKIKINYKHLIIIIIIIKSYDIVSKILL
PPTYFDNNVITYHKLKQTIKKINKKKVKKKRIKIIRNNXNKKK---

---lytfi*sky*wkhh*infqf*kaftkiqth*mypfkwcnnxilditxnvxnlemxnx
yiq*stxicng*ypkn*rkxkirfr*kiqxiqkinkn*nqlxtfnnnnnnnkii*yrfkx
iitxnilr*qcnnis*ixtnnkknx*kks*kkkxlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK166 (VSK166Q) /CSM/VS/VSK1-C/VSK166Q.Seq.d/                        428   e-119
SSM122 (SSM122Q) /CSM/SS/SSM1-A/SSM122Q.Seq.d/                        428   e-119
FC-AB31 (FC-AB31Q) /CSM/FC/FC-AB/FC-AB31Q.Seq.d/                      406   e-112
VSD435 (VSD435Q) /CSM/VS/VSD4-B/VSD435Q.Seq.d/                        387   e-106
FC-BH04 (FC-BH04Q) /CSM/FC/FC-BH/FC-BH04Q.Seq.d/                       38   0.24
AFL879 (AFL879Q) /CSM/AF/AFL8-D/AFL879Q.Seq.d/                         38   0.24
AFF369 (AFF369Q) /CSM/AF/AFF3-C/AFF369Q.Seq.d/                         36   0.96
VSJ272 (VSJ272Q) /CSM/VS/VSJ2-C/VSJ272Q.Seq.d/                         34   3.8
VSH806 (VSH806Q) /CSM/VS/VSH8-A/VSH806Q.Seq.d/                         34   3.8
VSA448 (VSA448Q) /CSM/VS/VSA4-B/VSA448Q.Seq.d/                         34   3.8
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX161528|BX161528.1 Danio rerio genomic clone DKEY-167F21, genomic survey sequence.    42  0.003  3
AC101590|AC101590.1 Mus musculus clone RP23-197N5, LOW-PASS SEQUENCE SAMPLING.    38  0.38  2
AC096173|AC096173.6 Rattus norvegicus clone CH230-11I10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.80  1
BX510992|BX510992.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.80  1
AC122014|AC122014.2 Mus musculus chromosome UNK clone RP24-358F15, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46  0.80  1
AC127226|AC127226.3 Mus musculus chromosome 6 clone RP24-500I10, complete sequence.    46  0.80  1
BH093455|BH093455.1 RPCI-24-270N15.TJ RPCI-24 Mus musculus genomic clone RPCI-24-270N15 , DNA sequence.    46  0.80  1
AZ780706|AZ780706.1 2M0018I02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0018I02 R, DNA sequence.    42  0.81  2
AC132277|AC132277.3 Mus musculus chromosome 9 clone RP24-344C7, complete sequence.    38  0.93  3
AC122344|AC122344.3 Mus musculus chromosome 9 clone RP23-364M19, complete sequence.    38  0.97  2
dna update 2003. 7.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 964,075,029
protein update 2009. 3.26
PSORT 

 psg: 1.01  gvh: 0.30  alm: 0.29  top: 0.37  tms: 0.07  mit: 0.28  mip: 0.20
 nuc: 0.29  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.50  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSK166 is cyt
5' end seq. ID VSK166F
5' end seq. 
>VSK166F.Seq
ATAGTTGTATACGTTTATTTAATCAAAATATTAGTGGAAACATCACTAGATCAATTTCCA
ATTTTAAAAAGCATTCACCAAGATCCAAACTCACTAGATGTATCCTTTCAAATGGTGCAA
CAATTAGATATTGGACATCACTTCCAATGTCAGAAACTTGGAGATGTGAAACAGATATAT
TCAATAATCCACCAGAATATGTAATGGATAATATCCAAAAAATTAAAGAAAAAAGAAAAT
CAGATTTAGATGAAAGATTCAGACAATACAAAAAATAAACAAAAATTAAAATCAATTACA
AACATTTAATAATAATAATAATAATAATAAAATCATATGATATCGTTTCAAAAATATTAT
TACCACCAACATACTTCGATAACAATGTAATAACATATCATAAATTAAAACAAACAATAA
AAAAAATAAATAAAAAAAAAGTGAAAAAAAAAAGGATTAAAATTATTAGGAATAATTNTA
ATAAAAAAAAAA----------
Length of 5' end seq. 492
3' end seq. ID VSK166Z
3' end seq. 
>VSK166Z.Seq
----------AGTTGTATACGTTTATTTAATCAAAATATTAGTGGAAACATCACTAGATC
AATTTCCAATTTTAAAAAGCATTCACCAAGATCCAAACTCACTAGATGTATCCTTTCAAA
TGGTGCAACAATTANATATTGGACATCACTTNCAATGTCANAAACTTGGAGATGTGNAAC
ANATATATTCAATAATCCACCANAATATGTAATGGATAATATCCAAAAAATTAAAGAAAA
AANAAAATCAGATTTAGATGAAAGATTCAGNCAATACAAAAAATAAACAAAAATTAAAAT
CAATTACNAACNTTTAATAATAATAATAATAATAATAAAATCATATGATATCGTTTCAAA
AANATTATTACCNCCAACATACTTCGATAACAATGTAATAACATATCATAAATTNAAACA
AACAATAAAAAAAATNAATAAAAAAAAAGTTAAAAAAAAAAGGNATTAAAAAA
Length of 3' end seq. 463
Connected seq. ID VSK166P
Connected seq. 
>VSK166P.Seq
ATAGTTGTATACGTTTATTTAATCAAAATATTAGTGGAAACATCACTAGATCAATTTCCA
ATTTTAAAAAGCATTCACCAAGATCCAAACTCACTAGATGTATCCTTTCAAATGGTGCAA
CAATTAGATATTGGACATCACTTCCAATGTCAGAAACTTGGAGATGTGAAACAGATATAT
TCAATAATCCACCAGAATATGTAATGGATAATATCCAAAAAATTAAAGAAAAAAGAAAAT
CAGATTTAGATGAAAGATTCAGACAATACAAAAAATAAACAAAAATTAAAATCAATTACA
AACATTTAATAATAATAATAATAATAATAAAATCATATGATATCGTTTCAAAAATATTAT
TACCACCAACATACTTCGATAACAATGTAATAACATATCATAAATTAAAACAAACAATAA
AAAAAATAAATAAAAAAAAAGTGAAAAAAAAAAGGATTAAAATTATTAGGAATAATTNTA
ATAAAAAAAAAA----------AGTTGTATACGTTTATTTAATCAAAATATTAGTGGAAA
CATCACTAGATCAATTTCCAATTTTAAAAAGCATTCACCAAGATCCAAACTCACTAGATG
TATCCTTTCAAATGGTGCAACAATTANATATTGGACATCACTTNCAATGTCANAAACTTG
GAGATGTGNAACANATATATTCAATAATCCACCANAATATGTAATGGATAATATCCAAAA
AATTAAAGAAAAAANAAAATCAGATTTAGATGAAAGATTCAGNCAATACAAAAAATAAAC
AAAAATTAAAATCAATTACNAACNTTTAATAATAATAATAATAATAATAAAATCATATGA
TATCGTTTCAAAAANATTATTACCNCCAACATACTTCGATAACAATGTAATAACATATCA
TAAATTNAAACAAACAATAAAAAAAATNAATAAAAAAAAAGTTAAAAAAAAAAGGNATTA
AAAAA
Length of connected seq. 955
Full length Seq ID -
Full length Seq. -
Length of full length seq. -