AHA838
Library AH
(Link to library)
Clone ID AHA838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10817-1|Contig-U12635-1
Original site URL
Representative seq. ID AHA838P
(Link to Original site)
Representative DNA sequence
>AHA838 (AHA838Q) /CSM/AH/AHA8-B/AHA838Q.Seq.d/
GAGAAAAAAGAAAAGGAATTAAAGGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAG
GAATTAAAAGAAAAGGAATTAACTTCACCAAAAAAAGAAACTATTGATATTTCAGATTTA
TTTAAAAGAGCAAATGCTGAAGCTAAATCGTCAGTACCAACCTCAACATCTAAAAACAGT
AAAACTAATAAAAAACAAAAAGTTGATCATAAACCAACAGCAACAACAAAAAAACCATCA
CCTGTACTTGAAGCAAAGCAAAGCACCACAACCACCACCACCACAACTACTACCTCTACC
GCCACAACTATTTCTTCAAAATCAATTTCAAGTCCATCTAAAAAAGAAGAAAAAGAAGTA
ATAACTTCAAAAAAACAAGTTGAAGCAACAAAAGTAGAAGTTAAAAAAGAAAAAGAAAAA
GAAAAAGAAAAAGAAAAAGAAGATGATGAGGAAGAAGAGGAAGAAGAAGAAGATGATGAT
GAAAAATTAGAAGATATTGATGAGGAAGAATATGAAGAAGAAGAAGAAGAAGATGAAGAG
GGAATTAGTGAAAATGAAGAAGAAGAAGGAAXXXXXXXXXXTGATGTTTGGTTCTCTCCA
AGTTGTGTTTGGGAGGTATTGGCCGCTGATTTATCAATCTCTCCAGTTCATACAGCTGCA
TCTGGTATTTTGGATCCAAATAAAGGTATCGCTTTACGTTTCCCACGTTTCATTAGAATT
CGTCCTGATAAATCTCCTGAAGATGCAACTAGTTCTGATCAAGTTGTTGATATGTATCAA
AATCAAAAAATTAATAGTCAATCTTCAAAAATTAATGAAGAAGATGATGAGAAAAATTAG
AAGATATNATGAGGAAGAATANAAGAAGAAGAAGAAGAAGNANAAGNAGGGAATTAGTAA
AA
sequence update 2002.10.25
Translated Amino Acid sequence
EKKEKELKEKELKEKELKEKELKEKELTSPKKETIDISDLFKRANAEAKSSVPTSTSKNS
KTNKKQKVDHKPTATTKKPSPVLEAKQSTTTTTTTTTTSTATTISSKSISSPSKKEEKEV
ITSKKQVEATKVEVKKEKEKEKEKEKEDDEEEEEEEEDDDEKLEDIDEEEYEEEEEEDEE
GISENEEEEG---

---MFGSLQVVFGRYWPLIYQSLQFIQLHLVFWIQIKVSLYVSHVSLEFVLINLLKMQLV
LIKLLICIKIKKLIVNLQKLMKKMMRKIRRYXEEEXKKKKKKXKXGISK


Translated Amino Acid sequence (All Frames)
Frame A:
EKKEKELKEKELKEKELKEKELKEKELTSPKKETIDISDLFKRANAEAKSSVPTSTSKNS
KTNKKQKVDHKPTATTKKPSPVLEAKQSTTTTTTTTTTSTATTISSKSISSPSKKEEKEV
ITSKKQVEATKVEVKKEKEKEKEKEKEDDEEEEEEEEDDDEKLEDIDEEEYEEEEEEDEE
GISENEEEEG---

---*clvlsklclggigr*finlsssysciwyfgsk*ryrftfptfh*nss**is*rcn*
f*ssc*yvskskn**sifkn**rr**ekledxmrknxrrrrrxxxrelvk

Frame B:
rkkkrn*rkrn*kkrn*kkrn*kkrn*lhqkkkllifqiylkeqmlklnrqyqpqhlktv
kliknkkliinqqqqqknhhlylkqskapqppppqllplppqlflqnqfqvhlkkkkkk*
*lqknklkqqk*klkkkkkkkkkkkkkmmrkkrkkkkmmmkn*kilmrknmkkkkkkmkr
elvkmkkkke---

---dvwfspscvwevlaadlsispvhtaasgildpnkgialrfprfirirpdkspedats
sdqvvdmyqnqkinsqsskineeddekn*kix*grixeeeeexxxgn**

Frame C:
ekrkgikgkgikrkgikrkgikrkginftkkrny*yfrfi*kskc*s*ivstnlni*kq*
n**ktks*s*tnsnnkktitct*skakhhnhhhhnyylyrhnyffkinfksi*krrkrsn
nfkkts*snksrs*krkrkrkrkrkrr**grrgrrrr***kirry**gri*rrrrrr*rg
n**k*rrrr---

---MFGSLQVVFGRYWPLIYQSLQFIQLHLVFWIQIKVSLYVSHVSLEFVLINLLKMQLV
LIKLLICIKIKKLIVNLQKLMKKMMRKIRRYXEEEXKKKKKKXKXGISK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AHM654 (AHM654Q) /CSM/AH/AHM6-C/AHM654Q.Seq.d/ 452 e-126
AHM362 (AHM362Q) /CSM/AH/AHM3-C/AHM362Q.Seq.d/ 452 e-126
AHA838 (AHA838Q) /CSM/AH/AHA8-B/AHA838Q.Seq.d/ 452 e-126
AHD760 (AHD760Q) /CSM/AH/AHD7-C/AHD760Q.Seq.d/ 444 e-123
CHR561 (CHR561Q) /CSM/CH/CHR5-C/CHR561Q.Seq.d/ 436 e-121
SLG880 (SLG880Q) /CSM/SL/SLG8-D/SLG880Q.Seq.d/ 287 1e-76
SHB326 (SHB326Q) /CSM/SH/SHB3-B/SHB326Q.Seq.d/ 287 1e-76
SLC554 (SLC554Q) /CSM/SL/SLC5-C/SLC554Q.Seq.d/ 264 2e-69
AFD754 (AFD754Q) /CSM/AF/AFD7-C/AFD754Q.Seq.d/ 258 1e-67
AFL413 (AFL413Q) /CSM/AF/AFL4-A/AFL413Q.Seq.d/ 238 1e-61

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 452 0.0 13
AF192260|AF192260.1 Periplaneta fuliginosa densovirus, complete genome. 44 7e-06 3
AB028936|AB028936.1 Periplaneta fuliginosa densovirus ORF-beta, ORF-alpha, ORF-gamma, ORF-1, ORF-3, ORF-2 genes, complete cds. 44 7e-06 3
AC120684|AC120684.4 Rattus norvegicus clone CH230-13M5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 5e-04 3
AC107343|AC107343.4 Rattus norvegicus clone CH230-77B15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 7e-04 2
AC137362|AC137362.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces. 42 7e-04 2
AC094706|AC094706.5 Rattus norvegicus clone CH230-5L19, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces. 42 7e-04 2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 9e-04 13
AC017928|AC017928.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 40 0.001 4
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 34 0.001 11
dna update 2004. 2.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT068552_1(BT068552|pid:none) Zea mays full-length cDNA clone ZM... 123 7e-27
S71278(S71278) DNA ligase (ATP) (EC 6.5.1.1) - Arabidopsis thali... 116 9e-25
AK222166_1(AK222166|pid:none) Arabidopsis thaliana mRNA for DNA ... 116 9e-25
(Q42572) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 116 9e-25
CP000590_67(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 ... 105 2e-21
AC011438_1(AC011438|pid:none) Genomic sequence for Arabidopsis t... 104 3e-21
EU513165_1(EU513165|pid:none) Pinus sylvestris putative DNA liga... 102 2e-20
AC026875_23(AC026875|pid:none) Genomic sequence for Arabidopsis ... 101 4e-20
AM494967_348(AM494967|pid:none) Leishmania braziliensis chromoso... 99 1e-19
(P12000) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 99 2e-19
protein update 2009. 4.27
PSORT

psg: 0.28 gvh: 0.33 alm: 0.26 top: 0.80 tms: 0.07 mit: 0.10 mip: 0.00
nuc: 0.54 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal

>> prediction for AHA838 is cyt

5' end seq. ID AHA838F
5' end seq.
>AHA838F.Seq
GAGAAAAAAGAAAAGGAATTAAAGGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAG
GAATTAAAAGAAAAGGAATTAACTTCACCAAAAAAAGAAACTATTGATATTTCAGATTTA
TTTAAAAGAGCAAATGCTGAAGCTAAATCGTCAGTACCAACCTCAACATCTAAAAACAGT
AAAACTAATAAAAAACAAAAAGTTGATCATAAACCAACAGCAACAACAAAAAAACCATCA
CCTGTACTTGAAGCAAAGCAAAGCACCACAACCACCACCACCACAACTACTACCTCTACC
GCCACAACTATTTCTTCAAAATCAATTTCAAGTCCATCTAAAAAAGAAGAAAAAGAAGTA
ATAACTTCAAAAAAACAAGTTGAAGCAACAAAAGTAGAAGTTAAAAAAGAAAAAGAAAAA
GAAAAAGAAAAAGAAAAAGAAGATGATGAGGAAGAAGAGGAAGAAGAAGAAGATGATGAT
GAAAAATTAGAAGATATTGATGAGGAAGAATATGAAGAAGAAGAAGAAGAAGATGAAGAG
GGAATTAGTGAAAATGAAGAAGAAGAAGGAANNNNNNNNNN
Length of 5' end seq. 581
3' end seq. ID AHA838Z
3' end seq.
>AHA838Z.Seq
NNNNNNNNNNTGATGTTTGGTTCTCTCCAAGTTGTGTTTGGGAGGTATTGGCCGCTGATT
TATCAATCTCTCCAGTTCATACAGCTGCATCTGGTATTTTGGATCCAAATAAAGGTATCG
CTTTACGTTTCCCACGTTTCATTAGAATTCGTCCTGATAAATCTCCTGAAGATGCAACTA
GTTCTGATCAAGTTGTTGATATGTATCAAAATCAAAAAATTAATAGTCAATCTTCAAAAA
TTAATGAAGAAGATGATGAGAAAAATTAGAAGATATNATGAGGAAGAATANAAGAAGAAG
AAGAAGAAGNANAAGNAGGGAATTAGTAAAA
Length of 3' end seq. 331
Connected seq. ID AHA838P
Connected seq.
>AHA838P.Seq
GAGAAAAAAGAAAAGGAATTAAAGGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAG
GAATTAAAAGAAAAGGAATTAACTTCACCAAAAAAAGAAACTATTGATATTTCAGATTTA
TTTAAAAGAGCAAATGCTGAAGCTAAATCGTCAGTACCAACCTCAACATCTAAAAACAGT
AAAACTAATAAAAAACAAAAAGTTGATCATAAACCAACAGCAACAACAAAAAAACCATCA
CCTGTACTTGAAGCAAAGCAAAGCACCACAACCACCACCACCACAACTACTACCTCTACC
GCCACAACTATTTCTTCAAAATCAATTTCAAGTCCATCTAAAAAAGAAGAAAAAGAAGTA
ATAACTTCAAAAAAACAAGTTGAAGCAACAAAAGTAGAAGTTAAAAAAGAAAAAGAAAAA
GAAAAAGAAAAAGAAAAAGAAGATGATGAGGAAGAAGAGGAAGAAGAAGAAGATGATGAT
GAAAAATTAGAAGATATTGATGAGGAAGAATATGAAGAAGAAGAAGAAGAAGATGAAGAG
GGAATTAGTGAAAATGAAGAAGAAGAAGGAA----------TGATGTTTGGTTCTCTCCA
AGTTGTGTTTGGGAGGTATTGGCCGCTGATTTATCAATCTCTCCAGTTCATACAGCTGCA
TCTGGTATTTTGGATCCAAATAAAGGTATCGCTTTACGTTTCCCACGTTTCATTAGAATT
CGTCCTGATAAATCTCCTGAAGATGCAACTAGTTCTGATCAAGTTGTTGATATGTATCAA
AATCAAAAAATTAATAGTCAATCTTCAAAAATTAATGAAGAAGATGATGAGAAAAATTAG
AAGATATNATGAGGAAGAATANAAGAAGAAGAAGAAGAAGNANAAGNAGGGAATTAGTAA
AA
Length of connected seq. 892
Full length Seq ID -
Full length Seq. -
Length of full length seq. -