NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK153
Library VS
(Link to library)
Clone ID VSK153
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11777-1
Original site URL
Representative seq. ID VSK153F
(Link to Original site)
Representative DNA sequence 
>VSK153 (VSK153Q) /CSM/VS/VSK1-C/VSK153Q.Seq.d/
ATTTTTTTTTTTAAACTATCACTAATTTTCAAAGTNCAAATAAATAAATAAAAAAATAAA
TAAAAAATAAATAAATAAAAAAATAAAAAANTAAAAAAAAAAAAATTAAAAAAAAAAXXX
XXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
IFFFKLSLIFKVQINK*knk*kink*knkkxkkkklkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
IFFFKLSLIFKVQINK*knk*kink*knkkxkkkklkk---


Frame B:
ffflnyh*fskxk*inkkinkk*inkkikx*kkkn*kk---


Frame C:
fff*titnfqsxnk*ikk*iknk*ikk*kxkkkkikkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK153 (VSK153Q) /CSM/VS/VSK1-C/VSK153Q.Seq.d/                         46   1e-04
SHC268 (SHC268Q) /CSM/SH/SHC2-C/SHC268Q.Seq.d/                         46   1e-04
CHI345 (CHI345Q) /CSM/CH/CHI3-B/CHI345Q.Seq.d/                         46   1e-04
own update 2003. 1.10
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 410192
Number of Sequences: 25004352
Number of extensions: 410192
Number of successful extensions: 409534
Number of sequences better than 10.0: 0
length of query: 127
length of database: P,411,327,136
effective HSP length: 21
effective length of query: 106
effective length of database: O,886,235,744
effective search space: 3379940988864
effective search space used: 3379940988864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003. 7.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 32,414,282
protein update 2009. 3.25
PSORT -
5' end seq. ID VSK153F
5' end seq. 
>VSK153F.Seq
ATTTTTTTTTTTAAACTATCACTAATTTTCAAAGTNCAAATAAATAAATAAAAAAATAAA
TAAAAAATAAATAAATAAAAAAATAAAAAANTAAAAAAAAAAAAATTAAAAAAAAAA---
-------
Length of 5' end seq. 117
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -