VSK150
Library VS
(Link to library)
Clone ID VSK150
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11649-1
Original site URL
Representative seq. ID VSK150P
(Link to Original site)
Representative DNA sequence
>VSK150 (VSK150Q) /CSM/VS/VSK1-C/VSK150Q.Seq.d/
GAAAGGTAAATTAATCATTGCTTTTGATATTGAATATCCATCGAATCTTACAAATGATGA
TATTGAAAAACTCTCTAAAATCTTACCAAAAGCTGCCACCCCTTCTGTTTCAAAATCTGA
TTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTTAATACCAACGAACAAAGTTCTCATGG
TGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGTCATCAAAAACAACAACA
ACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGTGGTGGTCCACAACAAGC
ACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAXXXXXXXXXXCCACGNGTCCG
GAAAAGGTAAATTAATCATTGCTTTTGANATTGAANANCCANCGAATCTTNCAAATNATG
ANATTGAAAAACTCTNTAAAATCTTACCAAAAGCTGCCNCCCCTTNTGTTTCAAAATCTG
ATTGTAAANCGGTTGGTCTCTCAAAGGTAAACTTTAANACCAACGAACAAAGTTCTCATG
GTGGNGCTGGTGGTGCTTATCAACAACATGGTGGTGNTTATGGTCATCAAAAACAACAAC
AACAAGGTTTTAATCCTGCTGATTTTGGTGCNCAATTTGGTGGTGGTGGTCCNCAACAAG
CACAACAGTGTCAACAACAANAAACAATTTAAAAAAAAAAAAACTAAAAATATCC
sequence update 2001. 3.22
Translated Amino Acid sequence
kvn*slllilnihrilqmmilknslksyqklppllfqnlivnrlvsqr*TLIPTNKVLMV
VLVVLINNMVVLMVIKNNNNKVLILLILVLNLVVVVHNKHNSVNNNKQFKKK---

---HXSGKGKLIIAFXIEXPXNLXNXXIEKLXKILPKAAXPXVSKSDCKXVGLSKVNFXT
NEQSSHGGAGGAYQQHGGXYGHQKQQQQGFNPADFGAQFGGGGPQQAQQCQQQXTI*kkk
n*ky


Translated Amino Acid sequence (All Frames)
Frame A:
er*inhcf*y*isiesyk**y*ktl*nltkschpfcfki*l*igwslkgkl*yqrtkfsw
wcwwclsttwwclwsskttttrf*sc*fwcsiwwwwsttsttvsttinnlkkk---

---prvrkr*inhcf*x*xxxesxkx*x*ktl*nltkscxpxcfki*l*xgwslkgkl*x
qrtkfswwxwwclsttwwxlwsskttttrf*sc*fwcxiwwwwsxtsttvsttxnnlkkk
klkis

Frame B:
kgkliiafdieypsnltnddieklskilpkaatpsvsksdcksvglskvnfntneqsshg
gaggayqqhggayghqkqqqqgfnpadfgaqfggggpqqaqqcqqq*ti*kk---

---HXSGKGKLIIAFXIEXPXNLXNXXIEKLXKILPKAAXPXVSKSDCKXVGLSKVNFXT
NEQSSHGGAGGAYQQHGGXYGHQKQQQQGFNPADFGAQFGGGGPQQAQQCQQQXTI*kkk
n*ky

Frame C:
kvn*slllilnihrilqmmilknslksyqklppllfqnlivnrlvsqr*TLIPTNKVLMV
VLVVLINNMVVLMVIKNNNNKVLILLILVLNLVVVVHNKHNSVNNNKQFKKK---

---txpekvn*slllxlxxxrixqxmxlknsxksyqklpplxfqnlivxrlvsqr*tlxp
tnkvlmvxlvvlinnmvvxmviknnnnkvlillilvxnlvvvvxnkhnsvnnxkqfkkkk
tkni

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK150 (VSK150Q) /CSM/VS/VSK1-C/VSK150Q.Seq.d/ 652 0.0
SLK513 (SLK513Q) /CSM/SL/SLK5-A/SLK513Q.Seq.d/ 650 0.0
SLI160 (SLI160Q) /CSM/SL/SLI1-C/SLI160Q.Seq.d/ 650 0.0
SLE413 (SLE413Q) /CSM/SL/SLE4-A/SLE413Q.Seq.d/ 650 0.0
SLE114 (SLE114Q) /CSM/SL/SLE1-A/SLE114Q.Seq.d/ 650 0.0
SLA810 (SLA810Q) /CSM/SL/SLA8-A/SLA810Q.Seq.d/ 650 0.0
SFD228 (SFD228Q) /CSM/SF/SFD2-B/SFD228Q.Seq.d/ 650 0.0
SLH286 (SLH286Q) /CSM/SL/SLH2-D/SLH286Q.Seq.d/ 646 0.0
SLH333 (SLH333Q) /CSM/SL/SLH3-B/SLH333Q.Seq.d/ 644 0.0
SLA830 (SLA830Q) /CSM/SL/SLA8-B/SLA830Q.Seq.d/ 634 0.0

own update 2001.11.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF159241|AF159241.1 Dictyostelium discoideum ras interacting protein RIPA (ripA) mRNA, complete cds. 34 6e-04 4
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 38 8e-04 4
AC027194|AC027194.2 Homo sapiens chromosome 1 clone RP11-18C10 map 1, WORKING DRAFT SEQUENCE, 9 unordered pieces. 40 0.001 4
AA338158|AA338158.1 EST43291 Fetal brain I Homo sapiens cDNA 3' end similar to EST containing Alu repeat, mRNA sequence. 38 0.001 2
AX348975|AX348975.1 Sequence 433 from Patent WO0202807. 38 0.002 3
CA324720|CA324720.1 UI-M-FY0-ccl-d-24-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone IMAGE:6821065 5', mRNA sequence. 38 0.003 3
BV042883|BV042883.1 S212P6598FD9.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 38 0.004 3
AC010868|AC010868.1 Homo sapiens chromosome 15 clone BAC 396D15 map 15q24, LOW-PASS SEQUENCE SAMPLING. 38 0.004 5
AZ382066|AZ382066.1 1M0138G19R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0138G19 R, DNA sequence. 34 0.004 3
AC119824|AC119824.3 Mus musculus clone RP23-238F5, WORKING DRAFT SEQUENCE, 14 unordered pieces. 40 0.005 7
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ED3) RecName: Full=DnaJ homolog subfamily A member 1 homolog; 112 1e-23
AK220968_1(AK220968|pid:none) Arabidopsis thaliana mRNA for dnaJ... 40 0.088
(Q94AW8) RecName: Full=Chaperone protein dnaJ 3; Short=... 40 0.088
S71199(S71199) dnaJ protein homolog atj3 - Arabidopsis thaliana ... 40 0.088
AY045655_1(AY045655|pid:none) Arabidopsis thaliana AT3g44110/F26... 40 0.088
L36113_1(L36113|pid:none) Arabidopsis thaliana chaperone protein... 39 0.15
(P42825) RecName: Full=Chaperone protein dnaJ 2; Short=... 39 0.15
AF239932_1(AF239932|pid:none) Euphorbia esula DnaJ protein mRNA,... 36 0.97
AM429733_2(AM429733|pid:none) Vitis vinifera contig VV78X195295.... 35 1.7
EU294193_1(EU294193|pid:none) Toxoplasma gondii Sis1-like protei... 35 1.7
protein update 2009. 3.25
PSORT

psg: 0.99 gvh: 0.55 alm: 0.16 top: 0.53 tms: 0.13 mit: 0.28 mip: 0.00
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: nuclear
4.0 %: cytoplasmic

>> prediction for VSK150 is end

5' end seq. ID VSK150F
5' end seq.
>VSK150F.Seq
GAAAGGTAAATTAATCATTGCTTTTGATATTGAATATCCATCGAATCTTACAAATGATGA
TATTGAAAAACTCTCTAAAATCTTACCAAAAGCTGCCACCCCTTCTGTTTCAAAATCTGA
TTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTTAATACCAACGAACAAAGTTCTCATGG
TGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGTCATCAAAAACAACAACA
ACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGTGGTGGTCCACAACAAGC
ACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAA----------
Length of 5' end seq. 339
3' end seq. ID VSK150Z
3' end seq.
>VSK150Z.Seq
----------CCACGNGTCCGGAAAAGGTAAATTAATCATTGCTTTTGANATTGAANANC
CANCGAATCTTNCAAATNATGANATTGAAAAACTCTNTAAAATCTTACCAAAAGCTGCCN
CCCCTTNTGTTTCAAAATCTGATTGTAAANCGGTTGGTCTCTCAAAGGTAAACTTTAANA
CCAACGAACAAAGTTCTCATGGTGGNGCTGGTGGTGCTTATCAACAACATGGTGGTGNTT
ATGGTCATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCNCAATTTG
GTGGTGGTGGTCCNCAACAAGCACAACAGTGTCAACAACAANAAACAATTTAAAAAAAAA
AAAACTAAAAATATCC
Length of 3' end seq. 366
Connected seq. ID VSK150P
Connected seq.
>VSK150P.Seq
GAAAGGTAAATTAATCATTGCTTTTGATATTGAATATCCATCGAATCTTACAAATGATGA
TATTGAAAAACTCTCTAAAATCTTACCAAAAGCTGCCACCCCTTCTGTTTCAAAATCTGA
TTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTTAATACCAACGAACAAAGTTCTCATGG
TGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGTCATCAAAAACAACAACA
ACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGTGGTGGTCCACAACAAGC
ACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAA----------CCACGNGTCCG
GAAAAGGTAAATTAATCATTGCTTTTGANATTGAANANCCANCGAATCTTNCAAATNATG
ANATTGAAAAACTCTNTAAAATCTTACCAAAAGCTGCCNCCCCTTNTGTTTCAAAATCTG
ATTGTAAANCGGTTGGTCTCTCAAAGGTAAACTTTAANACCAACGAACAAAGTTCTCATG
GTGGNGCTGGTGGTGCTTATCAACAACATGGTGGTGNTTATGGTCATCAAAAACAACAAC
AACAAGGTTTTAATCCTGCTGATTTTGGTGCNCAATTTGGTGGTGGTGGTCCNCAACAAG
CACAACAGTGTCAACAACAANAAACAATTTAAAAAAAAAAAAACTAAAAATATCC
Length of connected seq. 705
Full length Seq ID -
Full length Seq. -
Length of full length seq. -