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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK125
Library VS
(Link to library)
Clone ID VSK125
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSK125F
(Link to Original site)
Representative DNA sequence 
>VSK125 (VSK125Q) /CSM/VS/VSK1-B/VSK125Q.Seq.d/
CCAAACAATTGATTGAAGGTCGTTTCAAAGAGGGTGACAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
KQLIEGRFKEGD---
Translated Amino Acid sequence (All Frames) 
Frame A:
pnn*lkvvskrv---


Frame B:
qtid*rsfqrg*---


Frame C:
KQLIEGRFKEGD---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK125 (VSK125Q) /CSM/VS/VSK1-B/VSK125Q.Seq.d/                         78   1e-14
VFK845 (VFK845Q) /CSM/VF/VFK8-B/VFK845Q.Seq.d/                         78   1e-14
VFJ861 (VFJ861Q) /CSM/VF/VFJ8-C/VFJ861Q.Seq.d/                         78   1e-14
VFF165 (VFF165Q) /CSM/VF/VFF1-C/VFF165Q.Seq.d/                         78   1e-14
VFA512 (VFA512Q) /CSM/VF/VFA5-A/VFA512Q.Seq.d/                         78   1e-14
SFJ278 (SFJ278Q) /CSM/SF/SFJ2-D/SFJ278Q.Seq.d/                         78   1e-14
SFD801 (SFD801Q) /CSM/SF/SFD8-A/SFD801Q.Seq.d/                         78   1e-14
CFJ263 (CFJ263Q) /CSM/CF/CFJ2-C/CFJ263Q.Seq.d/                         78   1e-14
CFJ163 (CFJ163Q) /CSM/CF/CFJ1-C/CFJ163Q.Seq.d/                         78   1e-14
CFI626 (CFI626Q) /CSM/CF/CFI6-B/CFI626Q.Seq.d/                         78   1e-14
own update 2001.11.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X07560|X07560.1 Dictyostelium discoideum DdPYR5-6 gene for UMP synthase (EC  2.4.2.10, EC 4.1.1.23).    78  7e-12  1
dna update 2001. 4. 6
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 49,665,211
protein update 2009. 3.25
PSORT -
5' end seq. ID VSK125F
5' end seq. 
>VSK125F.Seq
CCAAACAATTGATTGAAGGTCGTTTCAAAGAGGGTGACA----------
Length of 5' end seq. 39
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -