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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK121
Library VS
(Link to library)
Clone ID VSK121
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14806-1
Original site URL
Representative seq. ID VSK121P
(Link to Original site)
Representative DNA sequence 
>VSK121 (VSK121Q) /CSM/VS/VSK1-A/VSK121Q.Seq.d/
TAAATAAATAAATTTAAAAAAAAAAATGAAGAAAACTCTTTTAATAATTTTAATTTTAAT
TTCTATAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGG
TGGTACCTGTAATTCAAATAACCAATGTACATGCACTAATCAATGGACTGGAAATGATTG
CTCAACTAAAAAAATCCAAGTTTATTCAATTTTCCCATCATACACTGACGGNGGTGAAGT
GATTTTCTATGGTTGGTTCACAGCAAATTCTCCAATTTCTATCTTAATTGGAAGTCAAAC
TTGTACTCCAACCCTTGTTACTACTGATCAAATTAAATGTAATATTGGTGCTGGTAATGG
TGTAAAGGATATTTCAATCACTCAAGCTGGTTATACTTGGTTTTCTCCAAACTCCTATGA
ATATGTTATTAGACCAACCACTCCTGCAAATTGTCCAACAAATTGCTCAAATAGAGGTTA
TTGTGGTGCTGGTCGTTGTGXXXXXXXXXXGGGTAAATAAATNAATTTAAAAAAAAAAAT
GAAGAAAACTCTTTTAATAATTTGAATTTTAATTTCTATAATTTTTATAAANNNNTGTAT
TGCAGGAACATGTGNAAATGGCTGTTTAAATGGTGGTACCTGTAATTCAAATANCCAATG
TACANGCACTAATCNATGGACTGTNAANGATTGCNCAACTANGNGGATCCAAGTTTATTC
AATTTTCC
sequence update 2001. 3.22
Translated Amino Acid sequence 
k*INLKKKMKKTLLIILILISIIFINNCIAGTCGNGCLNGGTCNSNNQCTCTNQWTGNDC
STKKIQVYSIFPSYTDGGEVIFYGWFTANSPISILIGSQTCTPTLVTTDQIKCNIGAGNG
VKDISITQAGYTWFSPNSYEYVIRPTTPANCPTNCSNRGYCGAGRC---

---VNKXI*kkk*rklf**fef*fl*fl*xxvlqehvxmav*mvvpviqixnvxalixgl
xxiaqlxgskfiqfs
Translated Amino Acid sequence (All Frames) 
Frame A:
*inkfkkkneensfnnfnfnfynfyk*lycrnmwkwlfkwwyl*fk*pmymh*smdwk*l
ln*knpslfnfpiih*rx*sdflwlvhskfsnfylnwksnlysnpcyy*sn*m*ywcw*w
ckgyfnhsswlylvfskll*icy*tnhscklsnkllk*rllwcwsl---

---g*inxfkkkneensfnnlnfnfynfykxxycrnmxkwlfkwwyl*fkxpmyxh*smd
cxxlxnxxdpslfnf

Frame B:
k*INLKKKMKKTLLIILILISIIFINNCIAGTCGNGCLNGGTCNSNNQCTCTNQWTGNDC
STKKIQVYSIFPSYTDGGEVIFYGWFTANSPISILIGSQTCTPTLVTTDQIKCNIGAGNG
VKDISITQAGYTWFSPNSYEYVIRPTTPANCPTNCSNRGYCGAGRC---

---gk*xnlkkkmkktllii*ilisiifixxciagtcxngclnggtcnsnxqctxtnxwt
vxdcxtxxiqvysif

Frame C:
nk*i*kkk*rklf**f*f*fl*fl*iivlqehvemav*mvvpviqitnvhalinglemia
qlkkskfiqfshhtltxvk*fsmvgsqqilqfls*levklvlqplllliklnvilvlvmv
*rifqslklvilgflqtpmnmlldqpllqivqqiaqievivvlvvv---

---VNKXI*kkk*rklf**fef*fl*fl*xxvlqehvxmav*mvvpviqixnvxalixgl
xxiaqlxgskfiqfs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK121 (VSK121Q) /CSM/VS/VSK1-A/VSK121Q.Seq.d/                        779   0.0
VSJ446 (VSJ446Q) /CSM/VS/VSJ4-B/VSJ446Q.Seq.d/                        779   0.0
VSH376 (VSH376Q) /CSM/VS/VSH3-D/VSH376Q.Seq.d/                        779   0.0
VSF647 (VSF647Q) /CSM/VS/VSF6-B/VSF647Q.Seq.d/                        779   0.0
VSF439 (VSF439Q) /CSM/VS/VSF4-B/VSF439Q.Seq.d/                        779   0.0
VHP143 (VHP143Q) /CSM/VH/VHP1-B/VHP143Q.Seq.d/                        779   0.0
VSI251 (VSI251Q) /CSM/VS/VSI2-C/VSI251Q.Seq.d/                        771   0.0
VHG647 (VHG647Q) /CSM/VH/VHG6-B/VHG647Q.Seq.d/                        771   0.0
VSG790 (VSG790Q) /CSM/VS/VSG7-D/VSG790Q.Seq.d/                        724   0.0
VHM378 (VHM378Q) /CSM/VH/VHM3-D/VHM378Q.Seq.d/                        714   0.0
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY190950|AY190950.1 Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence.    40  0.035  3
AL663052|AL663052.8 Mouse DNA sequence from clone RP23-202N14 on chromosome X.    44  0.080  4
AC099023|AC099023.1 Drosophila melanogaster, chromosome 2R, region 56X-57A, BAC clone BACR48L22, complete sequence.    48  0.15  1
U55857|U55857.1 Caenorhabditis elegans cosmid K08D10.    34  0.34  4
AC131854|AC131854.3 Rattus norvegicus clone CH230-96G13, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34  0.44  4
AC020205|AC020205.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    48  1.2  2
AC096883|AC096883.2 Sus scrofa clone RP44-276G17, complete sequence.    46  1.5  2
AC005286|AC005286.1 Drosophila melanogaster DNA sequence (P1s DS01995 (D179), DS03499 (D217), and DS08132 (D174)), complete sequence.    48  1.7  2
AC009890|AC009890.12 Genomic Sequence For Homo sapiens Clone H_NH0262L04 From Chromosome 18, complete sequence.    44  1.8  2
AC099012|AC099012.1 Drosophila melanogaster, chromosome 2R, region 56F-57X, BAC clone BACR23F24, complete sequence.    48  1.8  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    79   2e-13
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    74   3e-12
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    72   1e-11
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    70   5e-11
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    67   7e-10
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    60   8e-08
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    59   2e-07
AC116984_28(AC116984|pid:none) Dictyostelium discoideum chromoso...    57   7e-07
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    56   9e-07
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    56   9e-07
protein update 2009. 3.25
PSORT 

 psg: 1.00  gvh: 0.59  alm: 0.16  top: 0.20  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for VSK121 is cyt
5' end seq. ID VSK121F
5' end seq. 
>VSK121F.Seq
TAAATAAATAAATTTAAAAAAAAAAATGAAGAAAACTCTTTTAATAATTTTAATTTTAAT
TTCTATAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGG
TGGTACCTGTAATTCAAATAACCAATGTACATGCACTAATCAATGGACTGGAAATGATTG
CTCAACTAAAAAAATCCAAGTTTATTCAATTTTCCCATCATACACTGACGGNGGTGAAGT
GATTTTCTATGGTTGGTTCACAGCAAATTCTCCAATTTCTATCTTAATTGGAAGTCAAAC
TTGTACTCCAACCCTTGTTACTACTGATCAAATTAAATGTAATATTGGTGCTGGTAATGG
TGTAAAGGATATTTCAATCACTCAAGCTGGTTATACTTGGTTTTCTCCAAACTCCTATGA
ATATGTTATTAGACCAACCACTCCTGCAAATTGTCCAACAAATTGCTCAAATAGAGGTTA
TTGTGGTGCTGGTCGTTGTG----------
Length of 5' end seq. 500
3' end seq. ID VSK121Z
3' end seq. 
>VSK121Z.Seq
----------GGGTAAATAAATNAATTTAAAAAAAAAAATGAAGAAAACTCTTTTAATAA
TTTGAATTTTAATTTCTATAATTTTTATAAANNNNTGTATTGCAGGAACATGTGNAAATG
GCTGTTTAAATGGTGGTACCTGTAATTCAAATANCCAATGTACANGCACTAATCNATGGA
CTGTNAANGATTGCNCAACTANGNGGATCCAAGTTTATTCAATTTTCC
Length of 3' end seq. 218
Connected seq. ID VSK121P
Connected seq. 
>VSK121P.Seq
TAAATAAATAAATTTAAAAAAAAAAATGAAGAAAACTCTTTTAATAATTTTAATTTTAAT
TTCTATAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGG
TGGTACCTGTAATTCAAATAACCAATGTACATGCACTAATCAATGGACTGGAAATGATTG
CTCAACTAAAAAAATCCAAGTTTATTCAATTTTCCCATCATACACTGACGGNGGTGAAGT
GATTTTCTATGGTTGGTTCACAGCAAATTCTCCAATTTCTATCTTAATTGGAAGTCAAAC
TTGTACTCCAACCCTTGTTACTACTGATCAAATTAAATGTAATATTGGTGCTGGTAATGG
TGTAAAGGATATTTCAATCACTCAAGCTGGTTATACTTGGTTTTCTCCAAACTCCTATGA
ATATGTTATTAGACCAACCACTCCTGCAAATTGTCCAACAAATTGCTCAAATAGAGGTTA
TTGTGGTGCTGGTCGTTGTG----------GGGTAAATAAATNAATTTAAAAAAAAAAAT
GAAGAAAACTCTTTTAATAATTTGAATTTTAATTTCTATAATTTTTATAAANNNNTGTAT
TGCAGGAACATGTGNAAATGGCTGTTTAAATGGTGGTACCTGTAATTCAAATANCCAATG
TACANGCACTAATCNATGGACTGTNAANGATTGCNCAACTANGNGGATCCAAGTTTATTC
AATTTTCC
Length of connected seq. 718
Full length Seq ID -
Full length Seq. -
Length of full length seq. -