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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSK112
Library VS
(Link to library)
Clone ID VSK112
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16538-1
Original site URL
Representative seq. ID VSK112P
(Link to Original site)
Representative DNA sequence 
>VSK112 (VSK112Q) /CSM/VS/VSK1-A/VSK112Q.Seq.d/
CACAAAATGAGACTTTTAATNCATTATTTGCAATTTTCGCTTTATTCAACTGCTCATTAG
CAAACACTGCCACCAATGTTGGTGAATTTTTAATTGGTTTCGCCCAAGGTGTTGAAATCA
CACTCAACAGTAACTCACAAGCATGTTTAAGTGGTGTCACCTCAACATTTGATGAATTCC
AAACTGCATTCCAATTAATTGACAGTGGTTTCAAATCAAAATCAATCAATCAAGTTAAAA
CTGGTATCACTGATCTCGGTTTAGCCATCCAACAAGTTCCAGTCGATTATGATGCTTGTG
GTATCACTCAATTCGTTGAAGAAATCGAAGAAATCGCCTCAAAATTATCATCAGGTGTTG
ATGGTATCGTTGATGTTATCTTAAAGGAAGCCGTCGAAATCTGGGAACACAAAAACGATC
TCTCTGCTGACTTCAAAACTGCCATCGCTGATTGGAAATCATCAAACTACAATGGTTCAG
GTGTTGCCGTCGGTTCAATCATTGGTGATTTAATCXXXXXXXXXXTAACTCACAAGCATG
TTTAAGTGGTGTCACCTCAACATTTGATGAATTCCNTAACTGCATTCCAATTAATTGACA
GTGGTTTCAAATCAAAATCAATCAATCAATGTTAAAACTGGTATCACTGATCTCGGTTTA
GCCATCCAACAAGTTCCAGTCGATTATGATGCTTGTGGTATCACTCAATTCGTTNAAGAA
ATCNAAGAAATCGCCTCAAAATTATCATCAGGTGTTGATGGTATCGTTGATGTTATCTTA
AAGGAAGCCGTCGAAATCTGGGAACACAAANACGATCTCTNTGCTGACTTCAAAACNGCC
ATCGCTGATTGGAAATCATCAAACTACAATGGTTCAGGTGNA
sequence update 2001. 3.22
Translated Amino Acid sequence 
QNETFNXLFAIFALFNCSLANTATNVGEFLIGFAQGVEITLNSNSQACLSGVTSTFDEFQ
TAFQLIDSGFKSKSINQVKTGITDLGLAIQQVPVDYDACGITQFVEEIEEIASKLSSGVD
GIVDVILKEAVEIWEHKNDLSADFKTAIADWKSSNYNGSGVAVGSIIGDLI---

---NSQACLSGVTSTFDEFXNCIPIN*qwfqikinqsmlklvslisv*psnkfqsimmlv
vslnsxkkskkspqnyhqvlmvslmls*rkpsksgntxtisxltskxpslignhqttmvq
v
Translated Amino Acid sequence (All Frames) 
Frame A:
hkmrllxhylqfslystah*qtlppmlvnf*lvspkvlkshstvthkhv*vvspqhlmns
klhsn*ltvvsnqnqsiklklvslisv*psnkfqsimmlvvslnslkkskkspqnyhqvl
mvslmls*rkpsksgntktislltsklpslignhqttmvqvlpsvqslvi*---

---*ltsmfkwchlni**ip*lhsn*ltvvsnqnqsinvktgitdlglaiqqvpvdydac
gitqfvxeixeiasklssgvdgivdvilkeaveiwehkxdlxadfktaiadwkssnyngs
gx

Frame B:
tk*df*xiicnfrfiqlliskhchqcw*ifnwfrprc*nhtqq*ltsmfkwchlni**ip
ncipin*qwfqikinqss*nwyh*srfshptsssrl*clwyhsir*rnrrnrlkiiirc*
wyr*cylkgsrrnlgtqkrslc*lqnchr*leiiklqwfrccrrfnhw*fn---

---NSQACLSGVTSTFDEFXNCIPIN*qwfqikinqsmlklvslisv*psnkfqsimmlv
vslnsxkkskkspqnyhqvlmvslmls*rkpsksgntxtisxltskxpslignhqttmvq
v

Frame C:
QNETFNXLFAIFALFNCSLANTATNVGEFLIGFAQGVEITLNSNSQACLSGVTSTFDEFQ
TAFQLIDSGFKSKSINQVKTGITDLGLAIQQVPVDYDACGITQFVEEIEEIASKLSSGVD
GIVDVILKEAVEIWEHKNDLSADFKTAIADWKSSNYNGSGVAVGSIIGDLI---

---thkhv*vvspqhlmnsxtafqlidsgfksksinqc*nwyh*srfshptsssrl*clw
yhsirxrnxrnrlkiiirc*wyr*cylkgsrrnlgtqxrslc*lqnxhr*leiiklqwfr
x
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK112 (VSK112Q) /CSM/VS/VSK1-A/VSK112Q.Seq.d/                       1643   0.0
VSA191 (VSA191Q) /CSM/VS/VSA1-D/VSA191Q.Seq.d/                        993   0.0
VSF413 (VSF413Q) /CSM/VS/VSF4-A/VSF413Q.Seq.d/                        991   0.0
VSF240 (VSF240Q) /CSM/VS/VSF2-B/VSF240Q.Seq.d/                        989   0.0
VSA374 (VSA374Q) /CSM/VS/VSA3-D/VSA374Q.Seq.d/                        985   0.0
VSI560 (VSI560Q) /CSM/VS/VSI5-C/VSI560Q.Seq.d/                        981   0.0
VSF357 (VSF357Q) /CSM/VS/VSF3-C/VSF357Q.Seq.d/                        979   0.0
VSB377 (VSB377Q) /CSM/VS/VSB3-D/VSB377Q.Seq.d/                        971   0.0
VSH606 (VSH606Q) /CSM/VS/VSH6-A/VSH606Q.Seq.d/                        969   0.0
VSI883 (VSI883Q) /CSM/VS/VSI8-D/VSI883Q.Seq.d/                        967   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Y17042|Y17042.1 Dictyostelium discoideum mRNA for P17 protein.   979  0.0  3
AW441538|AW441538.1 EST310934 tomato fruit red ripe, TAMU Lycopersicon esculentum cDNA clone cLEN17F17 5', mRNA sequence.    42  2e-05  2
BX571707|BX571707.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-93K4.    48  0.005  3
BX546503|BX546503.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-157E10.    44  0.057  2
AZ822051|AZ822051.1 2M0095O23F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0095O23 F, DNA sequence.    36  0.071  2
BM439182|BM439182.1 IpLvr02248 Liver cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    42  0.092  2
AZ580583|AZ580583.1 1M0368H23R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0368H23 R, DNA sequence.    38  0.17  2
AZ798970|AZ798970.1 2M0056N05F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0056N05 F, DNA sequence.    36  0.18  2
AL589987|AL589987.25 Human DNA sequence from clone RP11-364B14 on chromosome X.    48  0.19  1
BH687311|BH687311.1 BOHWK38TR BO_2_3_KB Brassica oleracea genomic clone BOHWK38, DNA sequence.    42  0.23  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O77257) RecName: Full=Protein gp17; Flags: Precursor;  &Y17042_...   305   2e-81
(Q54KD5) RecName: Full=P17/29C-like protein DDB_G0287399; Flags:...   127   4e-28
(Q23911) RecName: Full=Protein 29C; Flags: Precursor;                 123   9e-27
CP000975_2283(CP000975|pid:none) Methylacidiphilum infernorum V4...    35   2.4
AK090300_1(AK090300|pid:none) Mus musculus 16 days neonate male ...    35   3.1
AK144981_1(AK144981|pid:none) Mus musculus mammary gland RCB-052...    35   3.1
CP000312_556(CP000312|pid:none) Clostridium perfringens SM101, c...    34   5.3
AJ251464_1(AJ251464|pid:none) Candida albicans eng1 gene for end...    34   5.3
CP000851_3435(CP000851|pid:none) Shewanella pealeana ATCC 700345...    34   5.3
AY430810_53(AY430810|pid:none) Neodiprion sertifer nucleopolyhdr...    34   6.9
protein update 2009. 3.25
PSORT 

 psg: 0.75  gvh: 0.69  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSK112 is cyt
5' end seq. ID VSK112F
5' end seq. 
>VSK112F.Seq
CACAAAATGAGACTTTTAATNCATTATTTGCAATTTTCGCTTTATTCAACTGCTCATTAG
CAAACACTGCCACCAATGTTGGTGAATTTTTAATTGGTTTCGCCCAAGGTGTTGAAATCA
CACTCAACAGTAACTCACAAGCATGTTTAAGTGGTGTCACCTCAACATTTGATGAATTCC
AAACTGCATTCCAATTAATTGACAGTGGTTTCAAATCAAAATCAATCAATCAAGTTAAAA
CTGGTATCACTGATCTCGGTTTAGCCATCCAACAAGTTCCAGTCGATTATGATGCTTGTG
GTATCACTCAATTCGTTGAAGAAATCGAAGAAATCGCCTCAAAATTATCATCAGGTGTTG
ATGGTATCGTTGATGTTATCTTAAAGGAAGCCGTCGAAATCTGGGAACACAAAAACGATC
TCTCTGCTGACTTCAAAACTGCCATCGCTGATTGGAAATCATCAAACTACAATGGTTCAG
GTGTTGCCGTCGGTTCAATCATTGGTGATTTAATC----------
Length of 5' end seq. 515
3' end seq. ID VSK112Z
3' end seq. 
>VSK112Z.Seq
----------TAACTCACAAGCATGTTTAAGTGGTGTCACCTCAACATTTGATGAATTCC
NTAACTGCATTCCAATTAATTGACAGTGGTTTCAAATCAAAATCAATCAATCAATGTTAA
AACTGGTATCACTGATCTCGGTTTAGCCATCCAACAAGTTCCAGTCGATTATGATGCTTG
TGGTATCACTCAATTCGTTNAAGAAATCNAAGAAATCGCCTCAAAATTATCATCAGGTGT
TGATGGTATCGTTGATGTTATCTTAAAGGAAGCCGTCGAAATCTGGGAACACAAANACGA
TCTCTNTGCTGACTTCAAAACNGCCATCGCTGATTGGAAATCATCAAACTACAATGGTTC
AGGTGNA
Length of 3' end seq. 357
Connected seq. ID VSK112P
Connected seq. 
>VSK112P.Seq
CACAAAATGAGACTTTTAATNCATTATTTGCAATTTTCGCTTTATTCAACTGCTCATTAG
CAAACACTGCCACCAATGTTGGTGAATTTTTAATTGGTTTCGCCCAAGGTGTTGAAATCA
CACTCAACAGTAACTCACAAGCATGTTTAAGTGGTGTCACCTCAACATTTGATGAATTCC
AAACTGCATTCCAATTAATTGACAGTGGTTTCAAATCAAAATCAATCAATCAAGTTAAAA
CTGGTATCACTGATCTCGGTTTAGCCATCCAACAAGTTCCAGTCGATTATGATGCTTGTG
GTATCACTCAATTCGTTGAAGAAATCGAAGAAATCGCCTCAAAATTATCATCAGGTGTTG
ATGGTATCGTTGATGTTATCTTAAAGGAAGCCGTCGAAATCTGGGAACACAAAAACGATC
TCTCTGCTGACTTCAAAACTGCCATCGCTGATTGGAAATCATCAAACTACAATGGTTCAG
GTGTTGCCGTCGGTTCAATCATTGGTGATTTAATC----------TAACTCACAAGCATG
TTTAAGTGGTGTCACCTCAACATTTGATGAATTCCNTAACTGCATTCCAATTAATTGACA
GTGGTTTCAAATCAAAATCAATCAATCAATGTTAAAACTGGTATCACTGATCTCGGTTTA
GCCATCCAACAAGTTCCAGTCGATTATGATGCTTGTGGTATCACTCAATTCGTTNAAGAA
ATCNAAGAAATCGCCTCAAAATTATCATCAGGTGTTGATGGTATCGTTGATGTTATCTTA
AAGGAAGCCGTCGAAATCTGGGAACACAAANACGATCTCTNTGCTGACTTCAAAACNGCC
ATCGCTGATTGGAAATCATCAAACTACAATGGTTCAGGTGNA
Length of connected seq. 872
Full length Seq ID -
Full length Seq. -
Length of full length seq. -