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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ868
Library VS
(Link to library)
Clone ID VSJ868
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16039-1
Original site URL
Representative seq. ID VSJ868P
(Link to Original site)
Representative DNA sequence 
>VSJ868 (VSJ868Q) /CSM/VS/VSJ8-C/VSJ868Q.Seq.d/
ATTCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTAATTGTCACAAA
AGCAATAAAAATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCCTTGGCTGCTAC
CAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAG
ATTTAAAGCAAGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGTGACACCGCTGC
TATTTTTTTCGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGC
CATATTATATACACAAAAACAATATCCCCATATTGATATTAACTATGCAGTTTTAACACC
AGTTAATACTCACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGA
TGCAGCAGCAGCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGACAATAATAAAT
TTATGTAGGTTCXXXXXXXXXXGNGTCCGATCAACCCAAGTTTATATAATGACAATGGTG
TGTATTGTTCAAAAGTAATTGTCNCNAAAGCAATAAAAATTAGAGATTTAGATCAAATAC
CCCNAACTGNACTTGCCTTGGCTGCTACCAANAACGGTGCCAATTATGATTACGCCTCNC
CTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCAAGACTCAATANAAACCCAATAT
GGNACCCAAAAATGGGTGACNCCGCTGCTATTTTTTTNGCAAGATCTGATCAAGCAGGTT
GGGATATCANAGCTGAAGTTGACGAGGCCATATTATATACNCAAAAACAATATCCCCATA
TTGATATTAACTATGCAGTTTTAACNCCAGTTAATACTCNCGATTTAGTTGACATGAATC
TCATCGCCCAGTTATTCGCTGAGGATGATGCAGCAGCAGCAGCAGCAGCAAACCAACCNA
ACCAACCNAATCAAGGNCAATAATAAATTTATGTAGGTTCCATCCGAATTTTATTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
iqpkfi**qwcvlfksnchksnkn*rfrsnttnctclgcyq*rcql*lrlt*lhnkcqkk
i*sktq*kpnmvpkng*hrcyffrki*ssrlgyqs*s*rghiiytktispy*y*lcsfnt
s*ysrfs*heshrpvir*g*CSSSSSSKPTKPTKSRTIINLCRF---

---XPINPSLYNDNGVYCSKVIVXKAIKIRDLDQIPXTXLALAATXNGANYDYASPNYIT
NARKRFKARLNXNPIWXPKMGDXAAIFXARSDQAGWDIXAEVDEAILYTQKQYPHIDINY
AVLTPVNTXDLVDMNLIAQLFAEDDAAAAAAANQPNQPNQGQ**iyvgsirilf
Translated Amino Acid sequence (All Frames) 
Frame A:
iqpkfi**qwcvlfksnchksnkn*rfrsnttnctclgcyq*rcql*lrlt*lhnkcqkk
i*sktq*kpnmvpkng*hrcyffrki*ssrlgyqs*s*rghiiytktispy*y*lcsfnt
s*ysrfs*heshrpvir*g*CSSSSSSKPTKPTKSRTIINLCRF---

---xsdqpkfi**qwcvlfksncxxsnkn*rfrsntpnxtclgcyqxrcql*lrlx*lhn
kcqkki*sktqxkpnmxpkng*xrcyffxki*ssrlgyxs*s*rghiiyxktispy*y*l
csfnxs*ysrfs*heshrpvir*g*csssssskptxptxsrxiinlcrfhpnfi

Frame B:
fnpslyndngvycskvivtkaikirdldqipqtvlalaatnnganydyaspnyitnarkr
fkarlnrnpiwypkmgdtaaiffarsdqagwdiraevdeailytqkqyphidinyavltp
vnthdlvdmnliaqlfaeddaaaaaaanqpnqpnqgq**iyvg---

---XPINPSLYNDNGVYCSKVIVXKAIKIRDLDQIPXTXLALAATXNGANYDYASPNYIT
NARKRFKARLNXNPIWXPKMGDXAAIFXARSDQAGWDIXAEVDEAILYTQKQYPHIDINY
AVLTPVNTXDLVDMNLIAQLFAEDDAAAAAAANQPNQPNQGQ**iyvgsirilf

Frame C:
stqvyimtmvcivqk*lsqkq*klei*ikyhklylpwllpitvpimitphlit*qmpekd
lkqdsietqygtqkwvtpllffsqdlikqvgiselkltrpyyihknnipililtmqf*hq
lilti*lt*isspsyslrmmqqqqqqqtnqtnqikdnnkfm*v---

---vrstqvyimtmvcivqk*lsxkq*klei*ikypxlxlpwllpxtvpimitpxlit*q
mpekdlkqdsixtqygtqkwvtpllffxqdlikqvgisxlkltrpyyixknnipililtm
qf*xqlilxi*lt*isspsyslrmmqqqqqqqtnxtnxikxnnkfm*vpsefy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ868 (VSJ868Q) /CSM/VS/VSJ8-C/VSJ868Q.Seq.d/                        793   0.0
VSJ818 (VSJ818Q) /CSM/VS/VSJ8-A/VSJ818Q.Seq.d/                        789   0.0
VSJ236 (VSJ236Q) /CSM/VS/VSJ2-B/VSJ236Q.Seq.d/                        789   0.0
VSI854 (VSI854Q) /CSM/VS/VSI8-C/VSI854Q.Seq.d/                        789   0.0
VSH612 (VSH612Q) /CSM/VS/VSH6-A/VSH612Q.Seq.d/                        789   0.0
VSF768 (VSF768Q) /CSM/VS/VSF7-C/VSF768Q.Seq.d/                        789   0.0
VSD644 (VSD644Q) /CSM/VS/VSD6-B/VSD644Q.Seq.d/                        789   0.0
VSD643 (VSD643Q) /CSM/VS/VSD6-B/VSD643Q.Seq.d/                        789   0.0
VHD475 (VHD475Q) /CSM/VH/VHD4-D/VHD475Q.Seq.d/                        789   0.0
VFL382 (VFL382Q) /CSM/VF/VFL3-D/VFL382Q.Seq.d/                        789   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X15380|X15380.1 Dictyostelium discoideum V4b gene.               476  0.0  3
X15381|X15381.1 Dictyostelium discoideum V4a gene.               476  e-130  1
AC128129|AC128129.3 Rattus norvegicus clone CH230-267K5, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.21  1
AC118395|AC118395.4 Rattus norvegicus clone CH230-111M14, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.21  1
AC134271|AC134271.2 Rattus norvegicus clone CH230-444F13, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.21  1
AC006068|AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.    36  0.68  6
CC159955|CC159955.1 ig05h07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig05h07, DNA sequence.    34  2.6  2
CC159954|CC159954.1 ig05h07.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig05h07, DNA sequence.    34  2.6  2
AP002416|AP002416.1 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-834I3, WORKING DRAFT SEQUENCE, 27 unordered pieces.    40  3.2  3
AC108132|AC108132.2 Homo sapiens chromosome 16 clone RP11-404F5, complete sequence.    44  3.3  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14330) RecName: Full=Vegetative-specific protein V4;  &S35649(...   286   7e-76
X15381_1(X15381|pid:none) Dictyostelium discoideum V4a gene.          176   8e-43
protein update 2009. 3.25
PSORT 

 psg: 0.63  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for VSJ868 is mit
5' end seq. ID VSJ868F
5' end seq. 
>VSJ868F.Seq
ATTCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTAATTGTCACAAA
AGCAATAAAAATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCCTTGGCTGCTAC
CAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAG
ATTTAAAGCAAGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGTGACACCGCTGC
TATTTTTTTCGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGC
CATATTATATACACAAAAACAATATCCCCATATTGATATTAACTATGCAGTTTTAACACC
AGTTAATACTCACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGA
TGCAGCAGCAGCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGACAATAATAAAT
TTATGTAGGTTC----------
Length of 5' end seq. 492
3' end seq. ID VSJ868Z
3' end seq. 
>VSJ868Z.Seq
----------GNGTCCGATCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAA
AAGTAATTGTCNCNAAAGCAATAAAAATTAGAGATTTAGATCAAATACCCCNAACTGNAC
TTGCCTTGGCTGCTACCAANAACGGTGCCAATTATGATTACGCCTCNCCTAATTACATAA
CAAATGCCAGAAAAAGATTTAAAGCAAGACTCAATANAAACCCAATATGGNACCCAAAAA
TGGGTGACNCCGCTGCTATTTTTTTNGCAAGATCTGATCAAGCAGGTTGGGATATCANAG
CTGAAGTTGACGAGGCCATATTATATACNCAAAAACAATATCCCCATATTGATATTAACT
ATGCAGTTTTAACNCCAGTTAATACTCNCGATTTAGTTGACATGAATCTCATCGCCCAGT
TATTCGCTGAGGATGATGCAGCAGCAGCAGCAGCAGCAAACCAACCNAACCAACCNAATC
AAGGNCAATAATAAATTTATGTAGGTTCCATCCGAATTTTATTT
Length of 3' end seq. 514
Connected seq. ID VSJ868P
Connected seq. 
>VSJ868P.Seq
ATTCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTAATTGTCACAAA
AGCAATAAAAATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCCTTGGCTGCTAC
CAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAG
ATTTAAAGCAAGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGTGACACCGCTGC
TATTTTTTTCGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGC
CATATTATATACACAAAAACAATATCCCCATATTGATATTAACTATGCAGTTTTAACACC
AGTTAATACTCACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGA
TGCAGCAGCAGCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGACAATAATAAAT
TTATGTAGGTTC----------GNGTCCGATCAACCCAAGTTTATATAATGACAATGGTG
TGTATTGTTCAAAAGTAATTGTCNCNAAAGCAATAAAAATTAGAGATTTAGATCAAATAC
CCCNAACTGNACTTGCCTTGGCTGCTACCAANAACGGTGCCAATTATGATTACGCCTCNC
CTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCAAGACTCAATANAAACCCAATAT
GGNACCCAAAAATGGGTGACNCCGCTGCTATTTTTTTNGCAAGATCTGATCAAGCAGGTT
GGGATATCANAGCTGAAGTTGACGAGGCCATATTATATACNCAAAAACAATATCCCCATA
TTGATATTAACTATGCAGTTTTAACNCCAGTTAATACTCNCGATTTAGTTGACATGAATC
TCATCGCCCAGTTATTCGCTGAGGATGATGCAGCAGCAGCAGCAGCAGCAAACCAACCNA
ACCAACCNAATCAAGGNCAATAATAAATTTATGTAGGTTCCATCCGAATTTTATTT
Length of connected seq. 1006
Full length Seq ID -
Full length Seq. -
Length of full length seq. -