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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ836
Library VS
(Link to library)
Clone ID VSJ836
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07038-1
Original site URL
Representative seq. ID VSJ836P
(Link to Original site)
Representative DNA sequence 
>VSJ836 (VSJ836Q) /CSM/VS/VSJ8-B/VSJ836Q.Seq.d/
AGCTAGAAAATCAGTGGATTATAAATTCATTAATGAATTACTTTGTTTTGATTTCTGTGA
ATTGGAACCTTCAAAACTTTATTCAACACCTGAATCAACTTTGGCTTTCGAAAAGAAACA
ATATCATGCTAAACAAATCCAGCTTCAATTATTACAGAAAATGAAAGAAAATGTCGAAAA
CAATTCAATGAATTGGTTAAAATCAGTTTTACAAAATAATAATTCTCCACGATCAAGAGC
AATTTCAATCTCTAGAGAAAAAGATCAAACTGATAAATCATCTGATGAATAATTTAAAAT
AAATAATAATGGAAAAAAAAAAXXXXXXXXXXAGCTAGAAAATCAGTGGATTATAAATTC
ATTAATGAATTACTTTGTTTTGATTTCTGTGAATTGGAACCTTCAAAACTTTATTCAACA
CCTGAATCAACTTTGGCTTTCGAAAAGAAACAATATCATGCTAAACAAATCCAGCTTCAA
TTATTACAGAAAATGAAAGAAAATGTCGAAAACAATTCAATGAATTGGTTAAAATCAGTT
TTACAAAATAATAATTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
arksvdykfinellcfdfcelepsklystpestlafekkqyhakqiqlqllqkmkenven
nsmnwlksvlqnnnsprsraisisrekdqtdkssde*FKINNNGKKK---

---ARKSVDYKFINELLCFDFCELEPSKLYSTPESTLAFEKKQYHAKQIQLQLLQKMKEN
VENNSMNWLKSVLQNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
s*kisgl*ih**itlf*fl*igtfktlfnt*infgfrketisc*tnpasiitenerkcrk
qfnelvkisftk**fstiksnfnl*rkrsn**ii**ii*nk**wkkk---

---s*kisgl*ih**itlf*fl*igtfktlfnt*infgfrketisc*tnpasiitenerk
crkqfnelvkisftk**l

Frame B:
arksvdykfinellcfdfcelepsklystpestlafekkqyhakqiqlqllqkmkenven
nsmnwlksvlqnnnsprsraisisrekdqtdkssde*FKINNNGKKK---

---ARKSVDYKFINELLCFDFCELEPSKLYSTPESTLAFEKKQYHAKQIQLQLLQKMKEN
VENNSMNWLKSVLQNNN

Frame C:
lenqwiinslmnyfvlisvnwnlqnfiqhlnqlwlskrnnimlnkssfnyyrk*kkmskt
iq*ig*nqfykiiilhdqeqfqslekkiklinhlmnnlk*iimekk---

---lenqwiinslmnyfvlisvnwnlqnfiqhlnqlwlskrnnimlnkssfnyyrk*kkm
sktiq*ig*nqfykiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ836 (VSJ836Q) /CSM/VS/VSJ8-B/VSJ836Q.Seq.d/                        618   e-176
VSF708 (VSF708Q) /CSM/VS/VSF7-A/VSF708Q.Seq.d/                         42   0.009
VSA211 (VSA211Q) /CSM/VS/VSA2-A/VSA211Q.Seq.d/                         42   0.009
VSK448 (VSK448Q) /CSM/VS/VSK4-B/VSK448Q.Seq.d/                         38   0.14
VSI730 (VSI730Q) /CSM/VS/VSI7-B/VSI730Q.Seq.d/                         38   0.14
VSI645 (VSI645Q) /CSM/VS/VSI6-B/VSI645Q.Seq.d/                         38   0.14
VSF260 (VSF260Q) /CSM/VS/VSF2-C/VSF260Q.Seq.d/                         38   0.14
VSD455 (VSD455Q) /CSM/VS/VSD4-C/VSD455Q.Seq.d/                         38   0.14
VSC414 (VSC414Q) /CSM/VS/VSC4-A/VSC414Q.Seq.d/                         38   0.14
VSC207 (VSC207Q) /CSM/VS/VSC2-A/VSC207Q.Seq.d/                         38   0.14
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z92814|Z92814.1 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone T28H1.    44  0.001  4
AL023851|AL023851.1 Caenorhabditis elegans YAC Y68A4B.            44  0.004  2
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    30  0.013  8
AC020316|AC020316.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    48  0.016  3
BX511219|BX511219.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42  0.022  5
AL161635|AL161635.4 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-390O6.    42  0.028  5
BX004880|BX004880.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    32  0.039  8
AE003675|AE003675.3 Drosophila melanogaster chromosome 3R, section 9 of 118 of the complete sequence.    48  0.043  5
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.046  7
AC016445|AC016445.4 Drosophila melanogaster, chromosome 3R, region 83D-83F, BAC clone BACR19H03, complete sequence.    48  0.049  3
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014816_59(AE014816|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.6
CP000976_713(CP000976|pid:none) Borrelia duttonii Ly, complete g...    34   2.8
EF494739_11(EF494739|pid:none) Blastocystis sp. DMP/02-328 mitoc...    34   2.8
CP000781_227(CP000781|pid:none) Xanthobacter autotrophicus Py2, ...    32   8.2
CP000993_701(CP000993|pid:none) Borrelia recurrentis A1, complet...    32   8.2
protein update 2009. 3.25
PSORT 

 psg: 0.39  gvh: 0.48  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VSJ836 is nuc
5' end seq. ID VSJ836F
5' end seq. 
>VSJ836F.Seq
AGCTAGAAAATCAGTGGATTATAAATTCATTAATGAATTACTTTGTTTTGATTTCTGTGA
ATTGGAACCTTCAAAACTTTATTCAACACCTGAATCAACTTTGGCTTTCGAAAAGAAACA
ATATCATGCTAAACAAATCCAGCTTCAATTATTACAGAAAATGAAAGAAAATGTCGAAAA
CAATTCAATGAATTGGTTAAAATCAGTTTTACAAAATAATAATTCTCCACGATCAAGAGC
AATTTCAATCTCTAGAGAAAAAGATCAAACTGATAAATCATCTGATGAATAATTTAAAAT
AAATAATAATGGAAAAAAAAAA----------
Length of 5' end seq. 322
3' end seq. ID VSJ836Z
3' end seq. 
>VSJ836Z.Seq
----------AGCTAGAAAATCAGTGGATTATAAATTCATTAATGAATTACTTTGTTTTG
ATTTCTGTGAATTGGAACCTTCAAAACTTTATTCAACACCTGAATCAACTTTGGCTTTCG
AAAAGAAACAATATCATGCTAAACAAATCCAGCTTCAATTATTACAGAAAATGAAAGAAA
ATGTCGAAAACAATTCAATGAATTGGTTAAAATCAGTTTTACAAAATAATAATTA
Length of 3' end seq. 225
Connected seq. ID VSJ836P
Connected seq. 
>VSJ836P.Seq
AGCTAGAAAATCAGTGGATTATAAATTCATTAATGAATTACTTTGTTTTGATTTCTGTGA
ATTGGAACCTTCAAAACTTTATTCAACACCTGAATCAACTTTGGCTTTCGAAAAGAAACA
ATATCATGCTAAACAAATCCAGCTTCAATTATTACAGAAAATGAAAGAAAATGTCGAAAA
CAATTCAATGAATTGGTTAAAATCAGTTTTACAAAATAATAATTCTCCACGATCAAGAGC
AATTTCAATCTCTAGAGAAAAAGATCAAACTGATAAATCATCTGATGAATAATTTAAAAT
AAATAATAATGGAAAAAAAAAA----------AGCTAGAAAATCAGTGGATTATAAATTC
ATTAATGAATTACTTTGTTTTGATTTCTGTGAATTGGAACCTTCAAAACTTTATTCAACA
CCTGAATCAACTTTGGCTTTCGAAAAGAAACAATATCATGCTAAACAAATCCAGCTTCAA
TTATTACAGAAAATGAAAGAAAATGTCGAAAACAATTCAATGAATTGGTTAAAATCAGTT
TTACAAAATAATAATTA
Length of connected seq. 547
Full length Seq ID -
Full length Seq. -
Length of full length seq. -