VSJ822
Library VS
(Link to library)
Clone ID VSJ822
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01707-1
Original site URL
Representative seq. ID VSJ822P
(Link to Original site)
Representative DNA sequence
>VSJ822 (VSJ822Q) /CSM/VS/VSJ8-A/VSJ822Q.Seq.d/
TCGACCCACGACGTCCGGNAAAAAATGAACAGAATAGTGGCCGTGATGCGGATAGTGGGC
GTGACCGTGACAAAAGTGATCGTGATCGTGACTATGACCGCAGTGATAGTCGTGGTGGGC
GTGATCGCGATAGAAATGATCGTGGCCGTGACAGAAGTGATCGTGATCGTGATAGAAGTG
ATCGTGATCGTGATAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGATAGAAATGACC
GTGACCGTGACAGAAATGACCGTGACCGTGACCGTGACAAAAGTGATCGTGACCGTGACA
GAAGTGACCGCAACCGAGACCGTGATCGTGATTATGATGATAGAGATAGAAAAAAAAGAA
GATAGGCACCTTTTCCAATATTTTACAATAAAAAAAACATAATAGTTTTTTTTAAAATAG
TAACTTAAATAAACTTTTTTTAAAACAAAGAGTAGAACATAAAAAAAAAAXXXXXXXXXX
GAAAAAATGAACAGAATAGTGGCCGTGATGCGGATAGTGGGCGTGACCGTGACAAAAGTG
ATCGTGATCGTGACTATGACCGCAGTGATAGTCGTGGTGGGCGTGATCGCGATAGAAATG
ATCGTGGCCGTGACAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGATCGTGATAGAA
GTGATCGTGATCGTGATAGAAGTGATCGTGATAGAAATGACCGTGACCGTGACAGAAATG
ACCGTGACCGTGACCGTGACAAAAGTGATCGTGACCGTGACAGAAGTGACCGCAACCGAG
ACCGTGATCGTGATTATGATGATAGAGATAGAAAAAAAAGAAGATAGGCACCTTTTCCAA
TATTTTACAATAAAAAAAACATAATAGTTTTTTTTAAAATAGTAACTTAAATAAACTTTT
TNAAAACAAAG
sequence update 2001. 3.22
Translated Amino Acid sequence
rpttsgkk*te*wp*cg*wa*p*qk*s*s*l*pq**swwa*sr*k*swp*qk*s*s**k*
s*s**k*s*s**k*s**k*p*p*qk*p*p*p*qk*s*p*qk*pqprp*s*l***r*kkkk
igtfsnilq*kkhnsff*NSNLNKLFLKQRVEHKKK---

---EKMNRIVAVMRIVGVTVTKVIVIVTMTAVIVVVGVIAIEMIVAVTEVIVIVIEVIVI
VIEVIVIVIEVIVIEMTVTVTEMTVTVTVTKVIVTVTEVTATETVIVIMMIEIEKKEDRH
LFQYFTIKKT**fflk**lk*tfxkq


Translated Amino Acid sequence (All Frames)
Frame A:
sthdvrxkmnrivavmrivgvtvtkvivivtmtavivvvgviaiemivavteviviviev
ivivievivivieviviemtvtvtemtvtvtvtkvivtvtevtatetvivimmieiekke
drhlfqyftikkt**fflk**lk*tffktksrt*kk---

---EKMNRIVAVMRIVGVTVTKVIVIVTMTAVIVVVGVIAIEMIVAVTEVIVIVIEVIVI
VIEVIVIVIEVIVIEMTVTVTEMTVTVTVTKVIVTVTEVTATETVIVIMMIEIEKKEDRH
LFQYFTIKKT**fflk**lk*tfxkq

Frame B:
rpttsgkk*te*wp*cg*wa*p*qk*s*s*l*pq**swwa*sr*k*swp*qk*s*s**k*
s*s**k*s*s**k*s**k*p*p*qk*p*p*p*qk*s*p*qk*pqprp*s*l***r*kkkk
igtfsnilq*kkhnsff*NSNLNKLFLKQRVEHKKK---

---kk*te*wp*cg*wa*p*qk*s*s*l*pq**swwa*sr*k*swp*qk*s*s**k*s*s
**k*s*s**k*s**k*p*p*qk*p*p*p*qk*s*p*qk*pqprp*s*l***r*kkkkigt
fsnilq*kkhnsff*nsnlnklfxnk

Frame C:
dprrpxkneqnsgrdadsgrdrdksdrdrdydrsdsrggrdrdrndrgrdrsdrdrdrsd
rdrdrsdrdrdrsdrdrndrdrdrndrdrdrdksdrdrdrsdrnrdrdrdyddrdrkkrr
*apfpifynkkniivffkivt*inff*nke*nikkk---

---kneqnsgrdadsgrdrdksdrdrdydrsdsrggrdrdrndrgrdrsdrdrdrsdrdr
drsdrdrdrsdrdrndrdrdrndrdrdrdksdrdrdrsdrnrdrdrdyddrdrkkrr*ap
fpifynkkniivffkivt*infxktk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ822 (VSJ822Q) /CSM/VS/VSJ8-A/VSJ822Q.Seq.d/ 311 1e-83
SSF169 (SSF169Q) /CSM/SS/SSF1-C/SSF169Q.Seq.d/ 151 2e-35
VSJ776 (VSJ776Q) /CSM/VS/VSJ7-D/VSJ776Q.Seq.d/ 36 0.91
VSJ650 (VSJ650Q) /CSM/VS/VSJ6-C/VSJ650Q.Seq.d/ 36 0.91
VSJ646 (VSJ646Q) /CSM/VS/VSJ6-B/VSJ646Q.Seq.d/ 36 0.91
VSJ568 (VSJ568Q) /CSM/VS/VSJ5-C/VSJ568Q.Seq.d/ 36 0.91
VSJ253 (VSJ253Q) /CSM/VS/VSJ2-C/VSJ253Q.Seq.d/ 36 0.91
VSI285 (VSI285Q) /CSM/VS/VSI2-D/VSI285Q.Seq.d/ 36 0.91
VSH512 (VSH512Q) /CSM/VS/VSH5-A/VSH512Q.Seq.d/ 36 0.91
VSH464 (VSH464Q) /CSM/VS/VSH4-C/VSH464Q.Seq.d/ 36 0.91

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AU065746|AU065746.2 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (E51274_1A). 30 4e-04 4
CA409754|CA409754.1 1304_F -P proteoid roots 12 and 14 DAE Lupinus albus cDNA clone 1304 5', mRNA sequence. 38 5e-04 4
CB626590|CB626590.1 ---. 30 0.002 4
CB626591|CB626591.1 ---. 30 0.002 4
CB651053|CB651053.1 ---. 30 0.002 4
CB677300|CB677300.1 OSJNEe14B10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe14B10 3', mRNA sequence. 30 0.003 4
BI118823|BI118823.1 EST211 Differentially expressed cDNA libraries of BTH-treated/blast fungus-infected rice leaf tissues Oryza sativa cDNA clone HNBI-w4, mRNA sequence. 30 0.003 4
CA910481|CA910481.1 PCSC17858 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Ni-binding urease accessory protein UreG, mRNA sequence. 32 0.006 3
BM598953|BM598953.1 17000687687906 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449701710 5', mRNA sequence. 34 0.050 3
BM602820|BM602820.1 17000687071842 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449709881 5', mRNA sequence. 34 0.056 3
dna update 2003. 7.27
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 323,157,069
protein update 2009. 3.25
PSORT

psg: 0.22 gvh: 0.50 alm: 0.07 top: 0.13 tms: 0.27 mit: 0.27 mip: 0.03
nuc: 0.02 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
36.0 %: endoplasmic reticulum
16.0 %: mitochondrial
8.0 %: nuclear
4.0 %: peroxisomal

>> prediction for VSJ822 is pla

5' end seq. ID VSJ822F
5' end seq.
>VSJ822F.Seq
TCGACCCACGACGTCCGGNAAAAAATGAACAGAATAGTGGCCGTGATGCGGATAGTGGGC
GTGACCGTGACAAAAGTGATCGTGATCGTGACTATGACCGCAGTGATAGTCGTGGTGGGC
GTGATCGCGATAGAAATGATCGTGGCCGTGACAGAAGTGATCGTGATCGTGATAGAAGTG
ATCGTGATCGTGATAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGATAGAAATGACC
GTGACCGTGACAGAAATGACCGTGACCGTGACCGTGACAAAAGTGATCGTGACCGTGACA
GAAGTGACCGCAACCGAGACCGTGATCGTGATTATGATGATAGAGATAGAAAAAAAAGAA
GATAGGCACCTTTTCCAATATTTTACAATAAAAAAAACATAATAGTTTTTTTTAAAATAG
TAACTTAAATAAACTTTTTTTAAAACAAAGAGTAGAACATAAAAAAAAAA----------
Length of 5' end seq. 470
3' end seq. ID VSJ822Z
3' end seq.
>VSJ822Z.Seq
----------GAAAAAATGAACAGAATAGTGGCCGTGATGCGGATAGTGGGCGTGACCGT
GACAAAAGTGATCGTGATCGTGACTATGACCGCAGTGATAGTCGTGGTGGGCGTGATCGC
GATAGAAATGATCGTGGCCGTGACAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGAT
CGTGATAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGATAGAAATGACCGTGACCGT
GACAGAAATGACCGTGACCGTGACCGTGACAAAAGTGATCGTGACCGTGACAGAAGTGAC
CGCAACCGAGACCGTGATCGTGATTATGATGATAGAGATAGAAAAAAAAGAAGATAGGCA
CCTTTTCCAATATTTTACAATAAAAAAAACATAATAGTTTTTTTTAAAATAGTAACTTAA
ATAAACTTTTTNAAAACAAAG
Length of 3' end seq. 431
Connected seq. ID VSJ822P
Connected seq.
>VSJ822P.Seq
TCGACCCACGACGTCCGGNAAAAAATGAACAGAATAGTGGCCGTGATGCGGATAGTGGGC
GTGACCGTGACAAAAGTGATCGTGATCGTGACTATGACCGCAGTGATAGTCGTGGTGGGC
GTGATCGCGATAGAAATGATCGTGGCCGTGACAGAAGTGATCGTGATCGTGATAGAAGTG
ATCGTGATCGTGATAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGATAGAAATGACC
GTGACCGTGACAGAAATGACCGTGACCGTGACCGTGACAAAAGTGATCGTGACCGTGACA
GAAGTGACCGCAACCGAGACCGTGATCGTGATTATGATGATAGAGATAGAAAAAAAAGAA
GATAGGCACCTTTTCCAATATTTTACAATAAAAAAAACATAATAGTTTTTTTTAAAATAG
TAACTTAAATAAACTTTTTTTAAAACAAAGAGTAGAACATAAAAAAAAAA----------
GAAAAAATGAACAGAATAGTGGCCGTGATGCGGATAGTGGGCGTGACCGTGACAAAAGTG
ATCGTGATCGTGACTATGACCGCAGTGATAGTCGTGGTGGGCGTGATCGCGATAGAAATG
ATCGTGGCCGTGACAGAAGTGATCGTGATCGTGATAGAAGTGATCGTGATCGTGATAGAA
GTGATCGTGATCGTGATAGAAGTGATCGTGATAGAAATGACCGTGACCGTGACAGAAATG
ACCGTGACCGTGACCGTGACAAAAGTGATCGTGACCGTGACAGAAGTGACCGCAACCGAG
ACCGTGATCGTGATTATGATGATAGAGATAGAAAAAAAAGAAGATAGGCACCTTTTCCAA
TATTTTACAATAAAAAAAACATAATAGTTTTTTTTAAAATAGTAACTTAAATAAACTTTT
TNAAAACAAAG
Length of connected seq. 901
Full length Seq ID -
Full length Seq. -
Length of full length seq. -