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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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VSJ792
Library VS
(Link to library)
Clone ID VSJ792
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSJ792P
(Link to Original site)
Representative DNA sequence 
>VSJ792 (VSJ792Q) /CSM/VS/VSJ7-D/VSJ792Q.Seq.d/
ACTACATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACA
AGCTACTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGA
TTCAACTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAA
AAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGG
TGTTGTCCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAG
AGTTATGTTATACCCATCAAACATCTAAATAAATCTTTAAAACGAAAAAAAAAATTATTT
GAAAAAAAAAAXXXXXXXXXXACTACATAAAATGGAAAAGATTTACTCAAAAGGTGTCGT
TTTAGGTTACAGAAGATCACAAGCTACTCAATACCCAAACATCAGTTTAATCAAAATTGA
AGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAG
CAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTG
CAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTTCGCCAGAAACNTCCCACCAAA
AGCTATGGGTGCCCCAGTCAGAGTTATGTTATACCCATCAAANATCTAAATAAATCTTTA
AAACGAAAAAAAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
tt*ngkdllkrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfqisq
kpnwsqnfmg*dlqnpr*FRCCPSSFRQKPPTKSYGCPSQSYVIPIKHLNKSLKRKKKLF
EKK---

---LHKMEKIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSK
SAKNPTGHKISWGKICKTHGSSGVVQARFARNXPPKAMGAPVRVMLYPSXI*inl*nekk
n
Translated Amino Acid sequence (All Frames) 
Frame A:
tt*ngkdllkrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfqisq
kpnwsqnfmg*dlqnpr*FRCCPSSFRQKPPTKSYGCPSQSYVIPIKHLNKSLKRKKKLF
EKK---

---tt*ngkdllkrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfq
isqkpnwsqnfmg*dlqnpr*frccpssfrqkxptksygcpsqsyvipikxlnkslkrkk
k

Frame B:
lhkmekiyskgvvlgyrrsqatqypnislikiegvvsredstfylgkkvclvskvsksak
nptghkiswgkickthgssgvvqarfarnlppkamgapvrvmlypsni*inl*nekknyl
kkk---

---LHKMEKIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSK
SAKNPTGHKISWGKICKTHGSSGVVQARFARNXPPKAMGAPVRVMLYPSXI*inl*nekk
n

Frame C:
yikwkrftqkvsf*vtedhkllntqtsv*sklkvlshvkiqlfi*vkksv*sakfpnqpk
tqlvtkfhgvrfakptvvqvlsklvspetshqklwvpqselcythqtsk*ifktkkkii*
kkk---

---yikwkrftqkvsf*vtedhkllntqtsv*sklkvlshvkiqlfi*vkksv*sakfpn
qpktqlvtkfhgvrfakptvvqvlsklvspetshqklwvpqselcythqxsk*ifktkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK108 (VSK108Q) /CSM/VS/VSK1-A/VSK108Q.Seq.d/                        670   0.0
VSJ792 (VSJ792Q) /CSM/VS/VSJ7-D/VSJ792Q.Seq.d/                        670   0.0
VSJ573 (VSJ573Q) /CSM/VS/VSJ5-D/VSJ573Q.Seq.d/                        670   0.0
VSJ462 (VSJ462Q) /CSM/VS/VSJ4-C/VSJ462Q.Seq.d/                        670   0.0
VSJ322 (VSJ322Q) /CSM/VS/VSJ3-A/VSJ322Q.Seq.d/                        670   0.0
VSJ132 (VSJ132Q) /CSM/VS/VSJ1-B/VSJ132Q.Seq.d/                        670   0.0
VSJ120 (VSJ120Q) /CSM/VS/VSJ1-A/VSJ120Q.Seq.d/                        670   0.0
VSI679 (VSI679Q) /CSM/VS/VSI6-D/VSI679Q.Seq.d/                        670   0.0
VSH370 (VSH370Q) /CSM/VS/VSH3-C/VSH370Q.Seq.d/                        670   0.0
VSG275 (VSG275Q) /CSM/VS/VSG2-D/VSG275Q.Seq.d/                        670   0.0
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ834795|BQ834795.1 Po_ad_03E06_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_03E06 5' similar to BAB27124 ES CELLS CDNA, RIKEN FULL-LENGTH ENRICHE FULL INSERT, mRNA sequence.    36  0.14  2
BG211495|BG211495.1 RST31062 Athersys RAGE Library Homo sapiens cDNA, mRNA sequence.    38  0.72  2
D17450|D17450.1 Mycoplasma salivarium gene for aminopeptidase, complete cds.    34  1.6  2
AL606531|AL606531.6 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-104H11.    34  2.5  5
AC121847|AC121847.2 Mus musculus chromosome 3 clone RP24-86M13, complete sequence.    36  3.6  6
AL645602|AL645602.14 Mouse DNA sequence from clone RP23-79E13 on chromosome 11.    34  4.1  5
AX344895|AX344895.1 Sequence 320 from Patent WO0200927.           40  4.5  2
AX323826|AX323826.1 Sequence 314 from Patent WO0192565.           40  4.5  2
AC009372|AC009372.6 Drosophila melanogaster 3L BAC RP98-48N4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    34  4.8  5
BM023621|BM023621.1 ie82g07.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens cDNA 5', mRNA sequence.    32  5.2  3
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY857450_1(AY857450|pid:none) Suberites domuncula L35a mRNA, com...   101   3e-20
EF081514_1(EF081514|pid:none) Picea sitchensis clone WS02712_C06...   100   8e-20
FB899478_1(FB899478|pid:none) Sequence 118751 from Patent WO2008...   100   8e-20
FB899466_1(FB899466|pid:none) Sequence 118739 from Patent WO2008...    99   1e-19
FJ362592_1(FJ362592|pid:none) Vernicia fordii 60S ribosomal prot...    99   1e-19
EF144854_1(EF144854|pid:none) Populus trichocarpa clone WS01119_...    99   1e-19
(Q9FZH0) RecName: Full=60S ribosomal protein L35a-2;  &AC008046_...    99   1e-19
FB899468_1(FB899468|pid:none) Sequence 118741 from Patent WO2008...    99   1e-19
(P51422) RecName: Full=60S ribosomal protein L35a-4;  &AF446895_...    99   2e-19
(Q9C912) RecName: Full=60S ribosomal protein L35a-3;  &AC020579_...    98   2e-19
protein update 2009. 3.25
PSORT 

 psg: 0.70  gvh: 0.21  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.07
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSJ792 is nuc
5' end seq. ID VSJ792F
5' end seq. 
>VSJ792F.Seq
ACTACATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACA
AGCTACTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGA
TTCAACTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAA
AAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGG
TGTTGTCCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAG
AGTTATGTTATACCCATCAAACATCTAAATAAATCTTTAAAACGAAAAAAAAAATTATTT
GAAAAAAAAAA----------
Length of 5' end seq. 371
3' end seq. ID VSJ792Z
3' end seq. 
>VSJ792Z.Seq
----------ACTACATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACA
GAAGATCACAAGCTACTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCT
CACGTGAAGATTCAACTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCA
AATCAGCCAAAAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACG
GTAGTTCAGGTGTTGTCCAAGCTCGTTTCGCCAGAAACNTCCCACCAAAAGCTATGGGTG
CCCCAGTCAGAGTTATGTTATACCCATCAAANATCTAAATAAATCTTTAAAACGAAAAAA
AAAAT
Length of 3' end seq. 355
Connected seq. ID VSJ792P
Connected seq. 
>VSJ792P.Seq
ACTACATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACA
AGCTACTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGA
TTCAACTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAA
AAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGG
TGTTGTCCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAG
AGTTATGTTATACCCATCAAACATCTAAATAAATCTTTAAAACGAAAAAAAAAATTATTT
GAAAAAAAAAA----------ACTACATAAAATGGAAAAGATTTACTCAAAAGGTGTCGT
TTTAGGTTACAGAAGATCACAAGCTACTCAATACCCAAACATCAGTTTAATCAAAATTGA
AGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAG
CAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTG
CAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTTCGCCAGAAACNTCCCACCAAA
AGCTATGGGTGCCCCAGTCAGAGTTATGTTATACCCATCAAANATCTAAATAAATCTTTA
AAACGAAAAAAAAAAT
Length of connected seq. 726
Full length Seq ID -
Full length Seq. -
Length of full length seq. -