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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ788
Library VS
(Link to library)
Clone ID VSJ788
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16504-1
Original site URL
Representative seq. ID VSJ788P
(Link to Original site)
Representative DNA sequence 
>VSJ788 (VSJ788Q) /CSM/VS/VSJ7-D/VSJ788Q.Seq.d/
AATTTTTTATAAAAAAAGAATGGAAGAAATAAAAGAAACTGTTGAAAAAAAAAAATAAAG
AAAAAANGTNTTTAAATGATTATAAAATAATTTCTGAAGGTAATAATATTAAAGTTTTAC
AAAAAAAAGATTTCAAACCAAAATTTTCATTGGTATCATATAAAAATTATGAACAAAATT
TTGATTTTGAAAATGCTAAAATTGTTTCAACCAATTTTGCCATCGATCGTCATATAAAGA
TGAAGAATCCACCAGATCCATTTGTNTTTATTAAAATGCCATCTTCAAAGCTTGTTCAAA
GTCAGTTAAAACTTTACTATGAAAATGAAGGTTNTAAGGATNTTCCAGTNTGGATTACAC
CATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTAXXXXXXX
XXXTANCAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTG
AAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAA
GTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTT
TAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATG
GTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCA
AATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCA
CTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACT
TGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAAT
AATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTAT
AAATAAAATTCTAAAAATAAAAAATAAAAAACTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
ffikkewkk*KKLLKKKNKEKXXLNDYKIISEGNNIKVLQKKDFKPKFSLVSYKNYEQNF
DFENAKIVSTNFAIDRHIKMKNPPDPFVFIKMPSSKLVQSQLKLYYENEGXKDXPVWITP
CSAFMRYIKSYPIVGTV---

---XETMEKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEYEDTVTSEETRSWSQ
TLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFREDKCIFFVPINRDDA
FTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k********lyklhkgftigvlil
v*ikf*k*kikn
Translated Amino Acid sequence (All Frames) 
Frame A:
nfl*kkngrnkrnc*kkkikkkxx*miik*flkviilkfykkkisnqnfhwyhikimnki
lilkmlklfqpilpsivi*r*rihqihlxllkchlqslfkvs*nftmkmkvxrxfqxglh
hvqhl*dtlnriqllel---

---xqrqwkrkkvspidsyqlvkpkhqfqsdslvvnhrwklqvvmnmktllhlkklevgv
kl*mkvlilfiktf*fmli*smvvvinhtlik*inlild*isnslekinvsflyqlivmm
pslfvikiihgiqlnmmf*litwvkikingflvvyhennnnnnnnnyinyikvsllvf*s
wyk*nsknkk*kt

Frame B:
ifykkrmeeiketvekkk*rkxvfk*l*nnf*r**y*sftkkrfqtkifigii*kl*tkf
*f*kc*ncfnqfchrssykdeestrsicxy*naifkacsksvktll*k*rx*gxssxdyt
mfsiyeih*ivsncwnc---

---xrdngkekrfhq*ilin**nqsisfsrilwl*iidgsykwl*i*rhcyi*rn*kles
nfk*rflyclskrfslclynlww*l*tih*sne*i*swikyqil*rr*mylfctn*s**c
lhsslsr*ymgss*i*cfn*llgsksr*mvfwwftmkiiiiiiiiii*it*rfhywcfnp
ginkilkiknkkl

Frame C:
ffikkewkk*KKLLKKKNKEKXXLNDYKIISEGNNIKVLQKKDFKPKFSLVSYKNYEQNF
DFENAKIVSTNFAIDRHIKMKNPPDPFVFIKMPSSKLVQSQLKLYYENEGXKDXPVWITP
CSAFMRYIKSYPIVGTV---

---XETMEKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEYEDTVTSEETRSWSQ
TLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFREDKCIFFVPINRDDA
FTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLP*k********lyklhkgftigvlil
v*ikf*k*kikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ788 (VSJ788Q) /CSM/VS/VSJ7-D/VSJ788Q.Seq.d/                       1479   0.0
VSK377 (VSK377Q) /CSM/VS/VSK3-D/VSK377Q.Seq.d/                        910   0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/                        910   0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/                        910   0.0
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/                        910   0.0
VSE526 (VSE526Q) /CSM/VS/VSE5-B/VSE526Q.Seq.d/                        910   0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/                        910   0.0
VSC792 (VSC792Q) /CSM/VS/VSC7-D/VSC792Q.Seq.d/                        910   0.0
VHJ463 (VHJ463Q) /CSM/VH/VHJ4-C/VHJ463Q.Seq.d/                        910   0.0
VHB403 (VHB403Q) /CSM/VH/VHB4-A/VHB403Q.Seq.d/                        910   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.   910  0.0  6
M19469|M19469.1 Dictyostelium discoideum 109 gene 3, complete cds.   321  e-105  2
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein.    86  2e-52  6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.022  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34  0.55  12
CA930567|CA930567.1 MTU4CA.P24.B01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.79  2
CA930485|CA930485.1 MTU4CA.P23.B04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.79  2
CA930468|CA930468.1 MTU4CA.P22.H11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.79  2
CA930577|CA930577.1 MTU4CA.P24.B11 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    34  0.79  2
AL109620|AL109620.5 Human DNA sequence from clone GS1-54N10 on chromosome Xq26.3-28.    46  0.83  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    61   6e-08
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    46   0.002
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete...    43   0.014
AE001419_5(AE001419|pid:none) Plasmodium falciparum 3D7 chromoso...    37   1.3
AY332625_22(AY332625|pid:none) Campylobacter jejuni serotype HS:...    35   2.9
DQ790236_1(DQ790236|pid:none) Champereia manillana acetyl co-A c...    35   3.8
BX545858_22(BX545858|pid:none) Campylobacter jejuni.                   35   4.9
AY934867_3(AY934867|pid:none) Campylobacter jejuni subsp. jejuni...    35   4.9
CP000932_787(CP000932|pid:none) Campylobacter lari RM2100, compl...    35   4.9
DQ790237_1(DQ790237|pid:none) Agonandra macrocarpa acetyl co-A c...    34   6.4
protein update 2009. 3.25
PSORT 

 psg: 0.57  gvh: 0.12  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSJ788 is nuc
5' end seq. ID VSJ788F
5' end seq. 
>VSJ788F.Seq
AATTTTTTATAAAAAAAGAATGGAAGAAATAAAAGAAACTGTTGAAAAAAAAAAATAAAG
AAAAAANGTNTTTAAATGATTATAAAATAATTTCTGAAGGTAATAATATTAAAGTTTTAC
AAAAAAAAGATTTCAAACCAAAATTTTCATTGGTATCATATAAAAATTATGAACAAAATT
TTGATTTTGAAAATGCTAAAATTGTTTCAACCAATTTTGCCATCGATCGTCATATAAAGA
TGAAGAATCCACCAGATCCATTTGTNTTTATTAAAATGCCATCTTCAAAGCTTGTTCAAA
GTCAGTTAAAACTTTACTATGAAAATGAAGGTTNTAAGGATNTTCCAGTNTGGATTACAC
CATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTA-------
---
Length of 5' end seq. 413
3' end seq. ID VSJ788Z
3' end seq. 
>VSJ788Z.Seq
----------TANCAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCA
ACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAA
GTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGT
CAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATA
ATCTATGGTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTA
AATATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGAT
GCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATT
GATTACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAA
TAATAATAATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATC
CTGGTATAAATAAAATTCTAAAAATAAAAAATAAAAAACTA
Length of 3' end seq. 571
Connected seq. ID VSJ788P
Connected seq. 
>VSJ788P.Seq
AATTTTTTATAAAAAAAGAATGGAAGAAATAAAAGAAACTGTTGAAAAAAAAAAATAAAG
AAAAAANGTNTTTAAATGATTATAAAATAATTTCTGAAGGTAATAATATTAAAGTTTTAC
AAAAAAAAGATTTCAAACCAAAATTTTCATTGGTATCATATAAAAATTATGAACAAAATT
TTGATTTTGAAAATGCTAAAATTGTTTCAACCAATTTTGCCATCGATCGTCATATAAAGA
TGAAGAATCCACCAGATCCATTTGTNTTTATTAAAATGCCATCTTCAAAGCTTGTTCAAA
GTCAGTTAAAACTTTACTATGAAAATGAAGGTTNTAAGGATNTTCCAGTNTGGATTACAC
CATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTA-------
---TANCAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTG
AAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAA
GTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTT
TAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATG
GTGGTAGTTATAAACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCA
AATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCA
CTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACT
TGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAAT
AATAATAATAATTATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTAT
AAATAAAATTCTAAAAATAAAAAATAAAAAACTA
Length of connected seq. 984
Full length Seq ID -
Full length Seq. -
Length of full length seq. -