VSJ735
Library VS
(Link to library)
Clone ID VSJ735
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID VSJ735P
(Link to Original site)
Representative DNA sequence
>VSJ735 (VSJ735Q) /CSM/VS/VSJ7-B/VSJ735Q.Seq.d/
AGTTTTTATAATTTGTTTTTTTTTTTTTTATAATAATTAAATNGNGTAAAAAAAAAAGGN
TTTTTTTTTTTAAAATTTTNTTNAAAGGGGNGGXXXXXXXXXXGGTTTTAAAAATTNTTT
TTTTTTTTTTTATAAAAATTNAATAGNGNNAAAAAAAAAAGTATATATATNTTTAAATTT
TATTTAAATGGGTAGNCCAACTATTAGTGATCAANAAAAATCCCAAGTTGCCTTTATAGC
AGGTAGTAGTTNTGATATTCATTCAACTACTGTTGCAANATTGTATNAAGGTANACAAGG
AAGATGGGAATTTATGGCCGTCGGTATTGTTTCTGTTGTTTCAAATCGTGTAGATAAAAC
AAATTATATCAAAGTTTTCGATTTAAAGGCCNACTACAGAATCATTTTTGAACAAGAAAT
TTATGACNCTTTTGAATTTCAAAAACAAANAGATTTCTTTTTTGCATTTGAAGGTGATTC
CTGTGNTTATGGCTTATCATTTGCTGATGNAACTGAAGCAGCTGAATTCTATGGCCNACN
TTTAAATTGTAAACAAGGAAATATTGGTAAAACTGCNGCAATTAATCCAAANACTTCTTC
AACCAGTATGTTTTTAATTATTTTTTAATTT
sequence update 2001. 3.22
Translated Amino Acid sequence
fl*FVFFFFIIIKXXKKKRXFFFKIXXKGX---

---GFKNXFFFFYKNXIXXKKKVYIXLNFI*mgxptisdqxksqvafiagssxdihsttv
axlyxgxqgrwefmavgivsvvsnrvdktnyikvfdlkaxyriifeqeiydxfefqkqxd
fffafegdscxyglsfadxteaaefygxxlnckqgnigktaainpxtsstsmfliif*f


Translated Amino Acid sequence (All Frames)
Frame A:
sfynlffffl**lnxvkkkgffflkfxxkgx---

---GFKNXFFFFYKNXIXXKKKVYIXLNFI*mgxptisdqxksqvafiagssxdihsttv
axlyxgxqgrwefmavgivsvvsnrvdktnyikvfdlkaxyriifeqeiydxfefqkqxd
fffafegdscxyglsfadxteaaefygxxlnckqgnigktaainpxtsstsmfliif*f

Frame B:
vfiicffffynn*xx*kkkxfff*nfxxrg---

---vlkixffffikix*xxkkkyiyx*ilfkwvxqllvixknpklpl*qvvvxifiqlll
qxcxkvxkedgnlwpsvlfllfqiv*ikqiiskfsi*rpttesflnkkfmtllnfknkxi
sflhlkvipvxmayhllmxlkqlnsmaxx*ivnkeilvklxqliqxllqpvcf*lffn

Frame C:
fl*FVFFFFIIIKXXKKKRXFFFKIXXKGX---

---f*kxffffl*kxnxxkkksiyxfkfylng*xny**sxkipsclysr**x*ysfnycc
xivxrxtrkmgiygrrycfccfkscr*nklyqsfrfkgxlqnhf*trnl*xf*isktxrf
lfci*r*flxlwliic*xn*ss*ilwptfkl*trkyw*ncxn*skxffnqyvfnyfli

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ735 (VSJ735Q) /CSM/VS/VSJ7-B/VSJ735Q.Seq.d/ 797 0.0
SSL103 (SSL103Q) /CSM/SS/SSL1-A/SSL103Q.Seq.d/ 745 0.0
AFG687 (AFG687Q) /CSM/AF/AFG6-D/AFG687Q.Seq.d/ 716 0.0
CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/ 599 e-170
SFG565 (SFG565Q) /CSM/SF/SFG5-C/SFG565Q.Seq.d/ 392 e-108
CFG253 (CFG253Q) /CSM/CF/CFG2-C/CFG253Q.Seq.d/ 48 2e-04
AFM869 (AFM869Q) /CSM/AF/AFM8-C/AFM869Q.Seq.d/ 48 2e-04
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/ 46 6e-04
VFE551 (VFE551Q) /CSM/VF/VFE5-C/VFE551Q.Seq.d/ 44 0.003
VSE761 (VSE761Q) /CSM/VS/VSE7-C/VSE761Q.Seq.d/ 42 0.010

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds. 436 0.0 5
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5. 42 0.011 2
AX356493|AX356493.1 Sequence 127 from Patent WO0181622. 42 0.065 3
AX347026|AX347026.1 Sequence 2097 from Patent WO0200928. 42 0.065 3
AC104058|AC104058.4 Homo sapiens BAC clone RP13-513D10 from 2, complete sequence. 42 0.072 2
AJ279062|AJ279062.1 Zea mays rbr2 gene for retinoblastoma-related protein, exons 1-16. 46 0.34 2
AC136505|AC136505.11 Medicago truncatula clone mth2-24f15, WORKING DRAFT SEQUENCE, 9 unordered pieces. 42 0.46 4
AX348613|AX348613.1 Sequence 71 from Patent WO0202807. 46 0.52 1
AX344220|AX344220.1 Sequence 67 from Patent WO0200926. 46 0.52 1
BZ698223|BZ698223.1 PUCDB83TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa118N22, DNA sequence. 46 0.52 1
dna update 2003. 7.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A... 214 2e-54
BC087802_1(BC087802|pid:none) Xenopus tropicalis Wiskott-Aldrich... 50 5e-05
BC158507_1(BC158507|pid:none) Xenopus tropicalis Wiskott-Aldrich... 50 5e-05
BC129739_1(BC129739|pid:none) Xenopus laevis hypothetical protei... 47 3e-04
(P70315) RecName: Full=Wiskott-Aldrich syndrome protein homolog;... 47 3e-04
CR380953_413(CR380953|pid:none) Candida glabrata strain CBS138 c... 47 4e-04
AX167535_1(AX167535|pid:none) Sequence 35 from Patent WO0144292.... 47 4e-04
BT059346_1(BT059346|pid:none) Salmo salar clone ssal-rgf-509-129... 47 4e-04
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric... 47 6e-04
BC066424_1(BC066424|pid:none) Danio rerio Wiskott-Aldrich syndro... 45 0.001
protein update 2009. 3.25
PSORT

psg: 0.39 gvh: 0.31 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VSJ735 is nuc

5' end seq. ID VSJ735F
5' end seq.
>VSJ735F.Seq
AGTTTTTATAATTTGTTTTTTTTTTTTTTATAATAATTAAATNGNGTAAAAAAAAAAGGN
TTTTTTTTTTTAAAATTTTNTTNAAAGGGGNGG----------
Length of 5' end seq. 93
3' end seq. ID VSJ735Z
3' end seq.
>VSJ735Z.Seq
----------GGTTTTAAAAATTNTTTTTTTTTTTTTTATAAAAATTNAATAGNGNNAAA
AAAAAAAGTATATATATNTTTAAATTTTATTTAAATGGGTAGNCCAACTATTAGTGATCA
ANAAAAATCCCAAGTTGCCTTTATAGCAGGTAGTAGTTNTGATATTCATTCAACTACTGT
TGCAANATTGTATNAAGGTANACAAGGAAGATGGGAATTTATGGCCGTCGGTATTGTTTC
TGTTGTTTCAAATCGTGTAGATAAAACAAATTATATCAAAGTTTTCGATTTAAAGGCCNA
CTACAGAATCATTTTTGAACAAGAAATTTATGACNCTTTTGAATTTCAAAAACAAANAGA
TTTCTTTTTTGCATTTGAAGGTGATTCCTGTGNTTATGGCTTATCATTTGCTGATGNAAC
TGAAGCAGCTGAATTCTATGGCCNACNTTTAAATTGTAAACAAGGAAATATTGGTAAAAC
TGCNGCAATTAATCCAAANACTTCTTCAACCAGTATGTTTTTAATTATTTTTTAATTT
Length of 3' end seq. 528
Connected seq. ID VSJ735P
Connected seq.
>VSJ735P.Seq
AGTTTTTATAATTTGTTTTTTTTTTTTTTATAATAATTAAATNGNGTAAAAAAAAAAGGN
TTTTTTTTTTTAAAATTTTNTTNAAAGGGGNGG----------GGTTTTAAAAATTNTTT
TTTTTTTTTTTATAAAAATTNAATAGNGNNAAAAAAAAAAGTATATATATNTTTAAATTT
TATTTAAATGGGTAGNCCAACTATTAGTGATCAANAAAAATCCCAAGTTGCCTTTATAGC
AGGTAGTAGTTNTGATATTCATTCAACTACTGTTGCAANATTGTATNAAGGTANACAAGG
AAGATGGGAATTTATGGCCGTCGGTATTGTTTCTGTTGTTTCAAATCGTGTAGATAAAAC
AAATTATATCAAAGTTTTCGATTTAAAGGCCNACTACAGAATCATTTTTGAACAAGAAAT
TTATGACNCTTTTGAATTTCAAAAACAAANAGATTTCTTTTTTGCATTTGAAGGTGATTC
CTGTGNTTATGGCTTATCATTTGCTGATGNAACTGAAGCAGCTGAATTCTATGGCCNACN
TTTAAATTGTAAACAAGGAAATATTGGTAAAACTGCNGCAATTAATCCAAANACTTCTTC
AACCAGTATGTTTTTAATTATTTTTTAATTT
Length of connected seq. 621
Full length Seq ID -
Full length Seq. -
Length of full length seq. -