NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ688
Library VS
(Link to library)
Clone ID VSJ688
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15907-1
Original site URL
Representative seq. ID VSJ688P
(Link to Original site)
Representative DNA sequence 
>VSJ688 (VSJ688Q) /CSM/VS/VSJ6-D/VSJ688Q.Seq.d/
TTTAGCTTCGAATATGTATTATTGCTATCATTTAAAGAAACATGAAATTGCAACAACTCA
ACCTTCAACAACTGGTCTTTTATTCTTTAATAATTATTTTAAAACAAATCAATTTTTATT
ATATAATATTAATCAATAAAATTTATTTTTAAAAATTTATTTCTTTAAAAAAAAAAXXXX
XXXXXXTTTAGCTTCGAATATGTATTATTGCTATCATTTAAAGAAACATGAAATTGCAAC
AACTCAACCTTCAACAACTGGTCTTTTATTCTTTAATAATTATTTTAAAACAAATCAATT
TTTATTATATAATATTAATCAATAAAATTTATTTTTAAAAATTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
lasnmyycyhlkkheiattqpsttgllffnnyfktnqfllyninq*NLFLKIYFFKKK--
-

---LASNMYYCYHLKKHEIATTQPSTTGLLFFNNYFKTNQFLLYNINQ*nlflki
Translated Amino Acid sequence (All Frames) 
Frame A:
fsfeyvlllsfket*ncnnstfnnwsfil**lf*nksifii*y*sikfifknlfl*kk--
-

---fsfeyvlllsfket*ncnnstfnnwsfil**lf*nksifii*y*sikfifkn

Frame B:
lasnmyycyhlkkheiattqpsttgllffnnyfktnqfllyninq*NLFLKIYFFKKK--
-

---LASNMYYCYHLKKHEIATTQPSTTGLLFFNNYFKTNQFLLYNINQ*nlflki

Frame C:
*lriciiaii*rnmklqqlnlqqlvfysliiilkqinfyyiilinkiyf*kfislkkk--
-

---*lriciiaii*rnmklqqlnlqqlvfysliiilkqinfyyiilinkiyf*kf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ688 (VSJ688Q) /CSM/VS/VSJ6-D/VSJ688Q.Seq.d/                        190   9e-48
FC-BJ24 (FC-BJ24Q) /CSM/FC/FC-BJ/FC-BJ24Q.Seq.d/                      190   9e-48
FC-BM19 (FC-BM19Q) /CSM/FC/FC-BM/FC-BM19Q.Seq.d/                       80   2e-14
SSK824 (SSK824Q) /CSM/SS/SSK8-A/SSK824Q.Seq.d/                         34   1.3
SLG640 (SLG640Q) /CSM/SL/SLG6-B/SLG640Q.Seq.d/                         34   1.3
SHK641 (SHK641Q) /CSM/SH/SHK6-B/SHK641Q.Seq.d/                         34   1.3
SFI375 (SFI375Q) /CSM/SF/SFI3-D/SFI375Q.Seq.d/                         34   1.3
CHS156 (CHS156Q) /CSM/CH/CHS1-C/CHS156Q.Seq.d/                         34   1.3
CHJ645 (CHJ645Q) /CSM/CH/CHJ6-B/CHJ645Q.Seq.d/                         34   1.3
VSC848 (VSC848Q) /CSM/VS/VSC8-B/VSC848Q.Seq.d/                         32   5.2
own update 2003. 7. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF466307|AF466307.2 Dictyostelium discoideum ABC transporter AbcB4 (abcB4) gene, complete cds.   190  7e-45  1
AC021928|AC021928.3 Homo sapiens clone RP11-30D20, WORKING DRAFT SEQUENCE, 17 unordered pieces.    38  0.004  4
AQ624334|AQ624334.1 HS_2103_B1_C10_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2103 Col=19 Row=F, genomic survey sequence.    34  0.092  2
AL138955|AL138955.14 Human DNA sequence from clone RP11-10E18 on chromosome 13.    38  0.47  3
AL451123|AL451123.12 Human DNA sequence from clone RP11-27J8 on chromosome 9.    36  1.2  2
AL139116|AL139116.5 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-403C19.    36  1.4  2
AC101733|AC101733.1 Mus musculus clone RP23-417L6, LOW-PASS SEQUENCE SAMPLING.    36  1.6  3
AL852602|AL852602.1 Xenopus tropicalis EST, clone TEgg010i15 5'.    42  4.3  1
BX232498|BX232498.1 Danio rerio genomic clone DKEY-249I15, genomic survey sequence.    42  4.3  1
BX152678|BX152678.1 Danio rerio genomic clone DKEY-119O24, genomic survey sequence.    42  4.3  1
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036943_1(BC036943|pid:none) Homo sapiens establishment of cohe...    40   0.024
AB067498_1(AB067498|pid:none) Homo sapiens mRNA for KIAA1911 pro...    40   0.024
(Q5FWF5) RecName: Full=N-acetyltransferase ESCO1;          EC=2....    40   0.024
BC089426_1(BC089426|pid:none) Homo sapiens establishment of cohe...    40   0.024
BC166441_1(BC166441|pid:none) Rattus norvegicus establishment of...    40   0.024
AB301070_1(AB301070|pid:none) Xenopus laevis xeco1 mRNA for XEco...    38   0.12
AK090579_1(AK090579|pid:none) Homo sapiens cDNA FLJ33260 fis, cl...    38   0.12
AY648804_1(AY648804|pid:none) Danio rerio RIKEN cDNA 2410004I17-...    35   0.58
(Q5SPR8) RecName: Full=N-acetyltransferase ESCO2;          EC=2....    35   0.58
BC148944_1(BC148944|pid:none) Bos taurus establishment of cohesi...    34   1.3
protein update 2009. 3.25
PSORT 

 psg: 0.69  gvh: 0.31  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSJ688 is cyt
5' end seq. ID VSJ688F
5' end seq. 
>VSJ688F.Seq
TTTAGCTTCGAATATGTATTATTGCTATCATTTAAAGAAACATGAAATTGCAACAACTCA
ACCTTCAACAACTGGTCTTTTATTCTTTAATAATTATTTTAAAACAAATCAATTTTTATT
ATATAATATTAATCAATAAAATTTATTTTTAAAAATTTATTTCTTTAAAAAAAAAA----
------
Length of 5' end seq. 176
3' end seq. ID VSJ688Z
3' end seq. 
>VSJ688Z.Seq
----------TTTAGCTTCGAATATGTATTATTGCTATCATTTAAAGAAACATGAAATTG
CAACAACTCAACCTTCAACAACTGGTCTTTTATTCTTTAATAATTATTTTAAAACAAATC
AATTTTTATTATATAATATTAATCAATAAAATTTATTTTTAAAAATTT
Length of 3' end seq. 158
Connected seq. ID VSJ688P
Connected seq. 
>VSJ688P.Seq
TTTAGCTTCGAATATGTATTATTGCTATCATTTAAAGAAACATGAAATTGCAACAACTCA
ACCTTCAACAACTGGTCTTTTATTCTTTAATAATTATTTTAAAACAAATCAATTTTTATT
ATATAATATTAATCAATAAAATTTATTTTTAAAAATTTATTTCTTTAAAAAAAAAA----
------TTTAGCTTCGAATATGTATTATTGCTATCATTTAAAGAAACATGAAATTGCAAC
AACTCAACCTTCAACAACTGGTCTTTTATTCTTTAATAATTATTTTAAAACAAATCAATT
TTTATTATATAATATTAATCAATAAAATTTATTTTTAAAAATTT
Length of connected seq. 334
Full length Seq ID -
Full length Seq. -
Length of full length seq. -