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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ680
Library VS
(Link to library)
Clone ID VSJ680
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14680-1
Original site URL
Representative seq. ID VSJ680P
(Link to Original site)
Representative DNA sequence 
>VSJ680 (VSJ680Q) /CSM/VS/VSJ6-D/VSJ680Q.Seq.d/
CACAAATATATATAAATACATAATGTCAAATTGGGAACACGGTTTATGCGATTGCACTTC
AGATATCAGAGTTTGCTGTATCTCTTATTTATGGCCACAACTTCAAGTTATGCAACAAAG
AGCAACCGTAGATGGTCGTCAATGTGAGATTACAGATTGCCTCTTTACCGCTTTATGTTT
CCCATGTGTTACTTGTTTAACTCGTTCACAAATCAGAGAAAAACACGGTATTGAAGGTTC
AGGTGTTATGGATTGTTTAACCGTTTGTTATTGTACCCTTTGTGTTATTCACCAACAAAC
CATGCAACTCCAAGCTAAAGGTGAAAAACCATCTGGTCTTTTCATGAACTAAATTATTTT
TTTTTTCTTAAATTAAAAAAAATAAAAAATAAAATAAATTAAATATATAAATAAATAAAT
ATACCGACTTTAAATTTTTTAATAAAAAAAAAAXXXXXXXXXXCACAAATATATATAAAT
ACATAATGTCAAATTGGGAACACGGTTTATGCGATTGCACTTCAGATATCAGAGTTTGCT
GTATCTCTTATTTATGGCCACAACTTCAAGTTATGCAACAAAGAGCAACCGTAGATGGTC
GTCAATGTGAGATTACAGATTGCCTCTTTACCGCTTTATGTTTCCCATGTGTTACTTGTT
TAACTCGTTCACAAATCANAGAAAAACACGGTATTGAAGGTTCAGGTGTTATGGATTGTT
TAACCGTTTGTTATTGNACCCTTTGTGTTATTCACCAACAAACCATGCAACTCCAAGCTA
AAGGTGAAAAACCATCNGGTCTTTTCATGAACTAAATTATTTTTTTTTTCTTAAATTAAA
AAAAATAAAGACATAAAATAAATTAAATATATAAATAAATAAATANACCGACTTTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
qiyint*cqigntvyaialqisefavsliyghnfklcnkeqp*mvvnvrlqiaslplyvs
hvllv*lvhksekntvlkvqvlwiv*pfvivpfvlftnkpcnsklkvknhlvfs*tklff
fs*ikknkk*nklni*INKYTDFKFFNKKK---

---TNIYKYIMSNWEHGLCDCTSDIRVCCISYLWPQLQVMQQRATVDGRQCEITDCLFTA
LCFPCVTCLTRSQIXEKHGIEGSGVMDCLTVCYXTLCVIHQQTMQLQAKGEKPSGLFMN*
iifffln*kk*rhkin*iyk*inxptl
Translated Amino Acid sequence (All Frames) 
Frame A:
hkyi*ihnvklgtrfmrlhfryqsllyllfmattssyatksnrrwssm*dyrlplyrfmf
pmcylfnsftnqrktry*rfrcyglfnrlllyplcysptnhatps*r*ktiwsfhelnyf
fflklkkiknkin*iyk*iniptlnflikkk---

---hkyi*ihnvklgtrfmrlhfryqsllyllfmattssyatksnrrwssm*dyrlplyr
fmfpmcylfnsftnxrktry*rfrcyglfnrlllxplcysptnhatps*r*ktixsfhel
nyffflklkkikt*nklni*inkxtdf

Frame B:
tniykyimsnwehglcdctsdirvccisylwpqlqvmqqratvdgrqceitdclftalcf
pcvtcltrsqirekhgiegsgvmdcltvcyctlcvihqqtmqlqakgekpsglfmn*iif
ffln*kk*kik*ikyink*iyrl*if**kk---

---TNIYKYIMSNWEHGLCDCTSDIRVCCISYLWPQLQVMQQRATVDGRQCEITDCLFTA
LCFPCVTCLTRSQIXEKHGIEGSGVMDCLTVCYXTLCVIHQQTMQLQAKGEKPSGLFMN*
iifffln*kk*rhkin*iyk*inxptl

Frame C:
qiyint*cqigntvyaialqisefavsliyghnfklcnkeqp*mvvnvrlqiaslplyvs
hvllv*lvhksekntvlkvqvlwiv*pfvivpfvlftnkpcnsklkvknhlvfs*tklff
fs*ikknkk*nklni*INKYTDFKFFNKKK---

---qiyint*cqigntvyaialqisefavsliyghnfklcnkeqp*mvvnvrlqiaslpl
yvshvllv*lvhksxkntvlkvqvlwiv*pfvixpfvlftnkpcnsklkvknhxvfs*tk
lfffs*ikknkdik*ikyink*ixrl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ680 (VSJ680Q) /CSM/VS/VSJ6-D/VSJ680Q.Seq.d/                        706   0.0
VSF670 (VSF670Q) /CSM/VS/VSF6-C/VSF670Q.Seq.d/                        706   0.0
VSE617 (VSE617Q) /CSM/VS/VSE6-A/VSE617Q.Seq.d/                        706   0.0
SSE751 (SSE751Q) /CSM/SS/SSE7-C/SSE751Q.Seq.d/                        706   0.0
SLC102 (SLC102Q) /CSM/SL/SLC1-A/SLC102Q.Seq.d/                        706   0.0
VHO563 (VHO563Q) /CSM/VH/VHO5-C/VHO563Q.Seq.d/                        698   0.0
VSI891 (VSI891Q) /CSM/VS/VSI8-D/VSI891Q.Seq.d/                        678   0.0
SSD143 (SSD143Q) /CSM/SS/SSD1-B/SSD143Q.Seq.d/                        678   0.0
VSE229 (VSE229Q) /CSM/VS/VSE2-B/VSE229Q.Seq.d/                        650   0.0
VSC668 (VSC668Q) /CSM/VS/VSC6-C/VSC668Q.Seq.d/                        636   0.0
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   507  0.0  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   276  4e-84  6
AZ741915|AZ741915.1 RPCI-24-141N12.TV RPCI-24 Mus musculus genomic clone RPCI-24-141N12 , DNA sequence.    38  0.067  2
AC129418|AC129418.2 Rattus norvegicus clone CH230-241H14, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38  0.091  6
AC112257|AC112257.5 Mus musculus chromosome 16 clone RP23-43A18, complete sequence.    36  0.18  5
AC133133|AC133133.2 Homo sapiens chromosome 5 clone RP11-1153G23, complete sequence.    38  0.18  2
AG124682|AG124682.1 Pan troglodytes DNA, clone: PTB-134L09.R.     36  0.24  2
AX008040|AX008040.1 Sequence 63 from Patent WO9967395.            40  0.25  3
BQ874420|BQ874420.1 QGI5E06.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI5E06, mRNA sequence.    36  0.26  2
AC144547|AC144547.6 Homo sapiens 12 BAC RP13-653N12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  0.27  2
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_130(AC116305|pid:none) Dictyostelium discoideum chromos...   224   3e-57
AC116956_80(AC116956|pid:none) Dictyostelium discoideum chromoso...   165   2e-39
AC150979_8(AC150979|pid:none) Medicago truncatula clone mth2-115...    65   3e-09
AC150979_5(AC150979|pid:none) Medicago truncatula clone mth2-115...    65   3e-09
AM442158_2(AM442158|pid:none) Vitis vinifera contig VV78X138242....    64   5e-09
EF087661_1(EF087661|pid:none) Picea sitchensis clone WS02733_O14...    62   2e-08
AC016041_18(AC016041|pid:none) Genomic sequence for Arabidopsis ...    60   9e-08
AM460282_3(AM460282|pid:none) Vitis vinifera contig VV78X085811....    58   5e-07
CU638743_20(CU638743|pid:none) Podospora anserina genomic DNA ch...    56   1e-06
DQ065847_1(DQ065847|pid:none) Chlamydomonas reinhardtii strain 1...    56   2e-06
protein update 2009. 3.25
PSORT 

 psg: 0.47  gvh: 0.39  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSJ680 is nuc
5' end seq. ID VSJ680F
5' end seq. 
>VSJ680F.Seq
CACAAATATATATAAATACATAATGTCAAATTGGGAACACGGTTTATGCGATTGCACTTC
AGATATCAGAGTTTGCTGTATCTCTTATTTATGGCCACAACTTCAAGTTATGCAACAAAG
AGCAACCGTAGATGGTCGTCAATGTGAGATTACAGATTGCCTCTTTACCGCTTTATGTTT
CCCATGTGTTACTTGTTTAACTCGTTCACAAATCAGAGAAAAACACGGTATTGAAGGTTC
AGGTGTTATGGATTGTTTAACCGTTTGTTATTGTACCCTTTGTGTTATTCACCAACAAAC
CATGCAACTCCAAGCTAAAGGTGAAAAACCATCTGGTCTTTTCATGAACTAAATTATTTT
TTTTTTCTTAAATTAAAAAAAATAAAAAATAAAATAAATTAAATATATAAATAAATAAAT
ATACCGACTTTAAATTTTTTAATAAAAAAAAAA----------
Length of 5' end seq. 453
3' end seq. ID VSJ680Z
3' end seq. 
>VSJ680Z.Seq
----------CACAAATATATATAAATACATAATGTCAAATTGGGAACACGGTTTATGCG
ATTGCACTTCAGATATCAGAGTTTGCTGTATCTCTTATTTATGGCCACAACTTCAAGTTA
TGCAACAAAGAGCAACCGTAGATGGTCGTCAATGTGAGATTACAGATTGCCTCTTTACCG
CTTTATGTTTCCCATGTGTTACTTGTTTAACTCGTTCACAAATCANAGAAAAACACGGTA
TTGAAGGTTCAGGTGTTATGGATTGTTTAACCGTTTGTTATTGNACCCTTTGTGTTATTC
ACCAACAAACCATGCAACTCCAAGCTAAAGGTGAAAAACCATCNGGTCTTTTCATGAACT
AAATTATTTTTTTTTTCTTAAATTAAAAAAAATAAAGACATAAAATAAATTAAATATATA
AATAAATAAATANACCGACTTTA
Length of 3' end seq. 433
Connected seq. ID VSJ680P
Connected seq. 
>VSJ680P.Seq
CACAAATATATATAAATACATAATGTCAAATTGGGAACACGGTTTATGCGATTGCACTTC
AGATATCAGAGTTTGCTGTATCTCTTATTTATGGCCACAACTTCAAGTTATGCAACAAAG
AGCAACCGTAGATGGTCGTCAATGTGAGATTACAGATTGCCTCTTTACCGCTTTATGTTT
CCCATGTGTTACTTGTTTAACTCGTTCACAAATCAGAGAAAAACACGGTATTGAAGGTTC
AGGTGTTATGGATTGTTTAACCGTTTGTTATTGTACCCTTTGTGTTATTCACCAACAAAC
CATGCAACTCCAAGCTAAAGGTGAAAAACCATCTGGTCTTTTCATGAACTAAATTATTTT
TTTTTTCTTAAATTAAAAAAAATAAAAAATAAAATAAATTAAATATATAAATAAATAAAT
ATACCGACTTTAAATTTTTTAATAAAAAAAAAA----------CACAAATATATATAAAT
ACATAATGTCAAATTGGGAACACGGTTTATGCGATTGCACTTCAGATATCAGAGTTTGCT
GTATCTCTTATTTATGGCCACAACTTCAAGTTATGCAACAAAGAGCAACCGTAGATGGTC
GTCAATGTGAGATTACAGATTGCCTCTTTACCGCTTTATGTTTCCCATGTGTTACTTGTT
TAACTCGTTCACAAATCANAGAAAAACACGGTATTGAAGGTTCAGGTGTTATGGATTGTT
TAACCGTTTGTTATTGNACCCTTTGTGTTATTCACCAACAAACCATGCAACTCCAAGCTA
AAGGTGAAAAACCATCNGGTCTTTTCATGAACTAAATTATTTTTTTTTTCTTAAATTAAA
AAAAATAAAGACATAAAATAAATTAAATATATAAATAAATAAATANACCGACTTTA
Length of connected seq. 886
Full length Seq ID -
Full length Seq. -
Length of full length seq. -