VSJ617
Library VS
(Link to library)
Clone ID VSJ617
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15729-1
Original site URL
Representative seq. ID VSJ617E
(Link to Original site)
Representative DNA sequence
>VSJ617 (VSJ617Q) /CSM/VS/VSJ6-A/VSJ617Q.Seq.d/
AGAGAATCAACTTTATACAAAACCAATTGAATTTAAAGAAATTAAATTATTGGAGAAATT
AGAATCAAATTCAAAATCAAGTAATATTTGGCAAATTGAATATAAATCAACTCAATTAGT
ATTAAAACAACCAAAAGATCAAGATTCTGATAAAAATATTGAAAAAAGAAAACAATTATT
TAATGGTAGTAATGTTAGTGGAAGTAATAATAGTGGCAGCAGTGGTGGTAATAATCATAA
TCATCATCATTGTAATAATAGTAATGGTAGTAATAGTGAAGTTATACCAAGTAAATATAC
AATGATTCAACATAAAAATCTTGGATTATTAGTTGGTTGGTGTGGTGATTCAATTATTTT
TGAAAGTTTTAAAGGTATGAATTCATTACATGACCTTAATTCATAGGGATGGTTTAAAGA
TTGATATGGCACTATTTATAAAGATAAGTAAGGACATTGCAAGCGTTATGGGATTATTAC
ATTCAAAAGATGTTGCACATGGTAATTTAACAAGTAGGTCCATTTATCTTGATAGATTTC
AAATTGTAAAAGTATCATTCCCAAAGTTGAATGCTACCGATTTAAATAATCCAGCCATTG
AACCAAGATATATGGCACCGGAAATGACAAGAATGGAAGAGGATCAAATATCATGTTCAA
TCGATGTCTATGCCTATGCCTTTGTTTTATGGGAGGCATTGACTTCGCATTTACCATTTA
GAAAATTCAATGATATCTCTGTGGCTGCCAAAGTCGCCTATGAAAATCTAAGACCAAAGA
TACCAACTTCATGTCCATTGATCATCCGTAAACTAATTAATAGATGCTGGGCTCCTCTAC
CAAGTGATAGACCAACTTTCAATGATATCTTAAAACTTTTCGATCATTTGGAGGGAAAAT
TATTCTTTTCTTCACCAGGTATACTTTGGTCGTTAAATAATGATCAAGAGGTGGAGAGAG
AACTTCAAAAGAAAGAGCGTTTCAATGAAATTACAGAGTTTTTACGGGAAAGAAAATACA
TTCTCAATCATTCAAAAATAATTTAATATT
sequence update 2001. 3.26
Translated Amino Acid sequence
rinfiqnqlnlkklnywrn*nqiqnqvifgklninqln*y*nnqkikilikilkkennyl
mvvmlveviivaavvviiiiiiiviivmvvivklyqvniq*fnikildy*lvgvviqlfl
kvlkv*IHYMTLIHRDGLKIDMALFIKISKDIASVMGLLHSKDVAHGNLTSRSIYLDRFQ
IVKVSFPKLNATDLNNPAIEPRYMAPEMTRMEEDQISCSIDVYAYAFVLWEALTSHLPFR
KFNDISVAAKVAYENLRPKIPTSCPLIIRKLINRCWAPLPSDRPTFNDILKLFDHLEGKL
FFSSPGILWSLNNDQEVERELQKKERFNEITEFLRERKYILNHSKII*y


Translated Amino Acid sequence (All Frames)
Frame A:
restlyktn*i*rn*iigeirikfkik*ylan*i*insisikttkrsrf**ky*kkktii
*w**c*wk***wqqww**s*sssl****w****sytk*iyndst*kswiiswlvw*fnyf
*kf*ryefit*p*figmv*rliwhyl*r*vrtlqalwdyyiqkmlhmvi*qvgpfilidf
kl*kyhsqs*mlpi*iiqplnqdiwhrk*qewkrikyhvqsmsmpmplfygrh*lriyhl
ensmislwlpkspmki*dqryqlhvh*ssvn*lidagllyqvidqlsmis*nfsiiwren
ysflhqvyfgr*imikrwrenfkrksvsmklqsfygkentfsiiqk*fni


Frame B:
enqlytkpiefkeiklleklesnskssniwqieykstqlvlkqpkdqdsdkniekrkqlf
ngsnvsgsnnsgssggnnhnhhhcnnsngsnsevipskytmiqhknlgllvgwcgdsiif
esfkgmnslhdlns*gwfkd*ygtiykdk*ghckrygiitfkrcctw*fnk*vhls**is
ncksiipkvecyrfk*ssh*tkiygtgndkngrgsnimfnrclclclcfmggidfafti*
kiq*ylcgcqsrl*ksktkdtnfmsidhp*tn**mlgsstk**tnfq*ylktfrsfggki
ilfftrytlvvk**srggertskerafq*nyrvftgkkihsqsfknnli


Frame C:
rinfiqnqlnlkklnywrn*nqiqnqvifgklninqln*y*nnqkikilikilkkennyl
mvvmlveviivaavvviiiiiiiviivmvvivklyqvniq*fnikildy*lvgvviqlfl
kvlkv*IHYMTLIHRDGLKIDMALFIKISKDIASVMGLLHSKDVAHGNLTSRSIYLDRFQ
IVKVSFPKLNATDLNNPAIEPRYMAPEMTRMEEDQISCSIDVYAYAFVLWEALTSHLPFR
KFNDISVAAKVAYENLRPKIPTSCPLIIRKLINRCWAPLPSDRPTFNDILKLFDHLEGKL
FFSSPGILWSLNNDQEVERELQKKERFNEITEFLRERKYILNHSKII*y


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ617 (VSJ617Q) /CSM/VS/VSJ6-A/VSJ617Q.Seq.d/ 2081 0.0
SFD291 (SFD291Q) /CSM/SF/SFD2-D/SFD291Q.Seq.d/ 1243 0.0
SFJ737 (SFJ737Q) /CSM/SF/SFJ7-B/SFJ737Q.Seq.d/ 1203 0.0
CFK442 (CFK442Q) /CSM/CF/CFK4-B/CFK442Q.Seq.d/ 1136 0.0
VFB843 (VFB843Q) /CSM/VF/VFB8-B/VFB843Q.Seq.d/ 1108 0.0
CHK524 (CHK524Q) /CSM/CH/CHK5-A/CHK524Q.Seq.d/ 726 0.0
AHL693 (AHL693Q) /CSM/AH/AHL6-D/AHL693Q.Seq.d/ 260 4e-68
CFA711 (CFA711Q) /CSM/CF/CFA7-A/CFA711Q.Seq.d/ 125 1e-27
SSM495 (SSM495Q) /CSM/SS/SSM4-D/SSM495Q.Seq.d/ 88 3e-16
VFC432 (VFC432Q) /CSM/VF/VFC4-B/VFC432Q.Seq.d/ 48 3e-04

own update 2003. 1.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U64830|U64830.1 Dictyostelium discoideum AX2 protein tyrosine kinase gene, complete cds. 1197 0.0 5
U01064|U01064.1 Dictyostelium discoideum AX2 protein tyrosine kinase mRNA, partial cds. 741 0.0 1
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 88 2e-11 9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 1e-04 10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 1e-04 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 2e-04 12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 44 3e-04 11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 4e-04 13
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 38 7e-04 12
AC115613|AC115613.3 Dictyostelium discoideum chromosome 2 map 209116-215573 strain AX4, complete sequence. 48 0.002 4
dna update 2003. 7.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54I36) RecName: Full=Dual specificity protein kinase dpyk3; ... 416 e-152
T18287(T18287) protein-tyrosine kinase (EC 2.7.1.112) - slime mo... 411 e-150
U01064_1(U01064|pid:none) Dictyostelium discoideum AX2 protein t... 260 5e-68
AP002845_6(AP002845|pid:none) Oryza sativa Japonica Group genomi... 102 2e-20
BT033919_1(BT033919|pid:none) Zea mays full-length cDNA clone ZM... 100 6e-20
FB918052_1(FB918052|pid:none) Sequence 137325 from Patent WO2008... 100 8e-20
FB918146_1(FB918146|pid:none) Sequence 137419 from Patent WO2008... 99 2e-19
(Q55GU0) RecName: Full=Probable serine/threonine-protein kinase ... 97 7e-19
EU957026_1(EU957026|pid:none) Zea mays clone 1580843 HT1 protein... 97 1e-18
B35670(B35670) protein-tyrosine kinase (EC 2.7.1.112) 2 - slime ... 96 1e-18
protein update 2009. 3.25
PSORT

psg: 0.72 gvh: 0.46 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VSJ617 is cyt

5' end seq. ID VSJ617F
5' end seq.
>VSJ617F.Seq
AGAGAATCAACTTTATACAAAACCAATTGAATTTAAAGAAATTAAATTATTGGAGAAATT
AGAATCAAATTCAAAATCAAGTAATATTTGGCAAATTGAATATAAATCAACTCAATTAGT
ATTAAAACAACCAAAAGATCAAGATTCTGATAAAAATATTGAAAAAAGAAAACAATTATT
TAATGGTAGTAATGTTAGTGGAAGTAATAATAGTGGCAGCAGTGGTGGTAATAATCATAA
TCATCATCATTGTAATAATAGTAATGGTAGTAATAGTGAAGTTATACCAAGTAAATATAC
AATGATTCAACATAAAAATCTTGGATTATTAGTTGGTTGGTGTGGTGATTCAATTATTTT
TGAAAGTTTTAAAGGTATGAATTCATTACATGACTTAATTCATAGGGATGGTTTAAAGAT
TGATATGGCACTATTTATAAAGATAAGTAAGGACATTGCAAGCGTTATGGGATTATTACA
TTCAAAAGATGTTGCACATGGTA----------
Length of 5' end seq. 503
3' end seq. ID VSJ617Z
3' end seq.
>VSJ617Z.Seq
----------ATTATTAGTTGGTTGGTGTGGTGATTCAATTATTTTTGAAAGTTTTAAAG
GTATGAATTCATTACATGACCTTAATTCATAGGGATGGTTTAAAGATTGATATGGCACTA
TTTATAAAGATAAGTAAGGACATTGCAAGCGTTATGGGATTATTACATTCAAAAGATGTT
GCACATGGTAATTTAACAAGTAGGTCCATTTATCTTGATAGATTTCAAATTGTAAAAGTA
TCATTCCCAAAGTTGAATGCTACCGATTTAAATAATCCAGCCATTGAACCAAGATATATG
GCACCGGAAATGACAAGAATGGAAGAGGATCAAATATCATGTTCAATCGATGTCTATGCC
TATGCCTTTGTTTTATGGGAGGCATTGACTTCGCATTTACCATTTAGAAAATTCAATGAT
ATCTCTGTGGCTGCCAAAGTCGCCTATGAAAATCTAAGACCAAAGATACCAACTTCATGT
CCATTGATCATCCGTAAACTAATTAATAGATGCTGGGCTCCTCTACCAAGTGATAGACCA
ACTTTCAATGATATCTTAAAACTTTTCGATCATTTGGAGGGAAAATTATTCTTTTCTTCA
CCAGGTATACTTTGGTCGTTAAATAATGATCAAGAGGTGGAGAGAGAACTTCAAAAGAAA
GAGCGTTTCAATGAAATTACAGAGTTTTTACGGGAAAGAAAATACATTCTCAATCATTCA
AAAATAATTTAATATT
Length of 3' end seq. 726
Connected seq. ID VSJ617P
Connected seq.
>VSJ617P.Seq
AGAGAATCAACTTTATACAAAACCAATTGAATTTAAAGAAATTAAATTATTGGAGAAATT
AGAATCAAATTCAAAATCAAGTAATATTTGGCAAATTGAATATAAATCAACTCAATTAGT
ATTAAAACAACCAAAAGATCAAGATTCTGATAAAAATATTGAAAAAAGAAAACAATTATT
TAATGGTAGTAATGTTAGTGGAAGTAATAATAGTGGCAGCAGTGGTGGTAATAATCATAA
TCATCATCATTGTAATAATAGTAATGGTAGTAATAGTGAAGTTATACCAAGTAAATATAC
AATGATTCAACATAAAAATCTTGGATTATTAGTTGGTTGGTGTGGTGATTCAATTATTTT
TGAAAGTTTTAAAGGTATGAATTCATTACATGACTTAATTCATAGGGATGGTTTAAAGAT
TGATATGGCACTATTTATAAAGATAAGTAAGGACATTGCAAGCGTTATGGGATTATTACA
TTCAAAAGATGTTGCACATGGTA----------ATTATTAGTTGGTTGGTGTGGTGATTC
AATTATTTTTGAAAGTTTTAAAGGTATGAATTCATTACATGACCTTAATTCATAGGGATG
GTTTAAAGATTGATATGGCACTATTTATAAAGATAAGTAAGGACATTGCAAGCGTTATGG
GATTATTACATTCAAAAGATGTTGCACATGGTAATTTAACAAGTAGGTCCATTTATCTTG
ATAGATTTCAAATTGTAAAAGTATCATTCCCAAAGTTGAATGCTACCGATTTAAATAATC
CAGCCATTGAACCAAGATATATGGCACCGGAAATGACAAGAATGGAAGAGGATCAAATAT
CATGTTCAATCGATGTCTATGCCTATGCCTTTGTTTTATGGGAGGCATTGACTTCGCATT
TACCATTTAGAAAATTCAATGATATCTCTGTGGCTGCCAAAGTCGCCTATGAAAATCTAA
GACCAAAGATACCAACTTCATGTCCATTGATCATCCGTAAACTAATTAATAGATGCTGGG
CTCCTCTACCAAGTGATAGACCAACTTTCAATGATATCTTAAAACTTTTCGATCATTTGG
AGGGAAAATTATTCTTTTCTTCACCAGGTATACTTTGGTCGTTAAATAATGATCAAGAGG
TGGAGAGAGAACTTCAAAAGAAAGAGCGTTTCAATGAAATTACAGAGTTTTTACGGGAAA
GAAAATACATTCTCAATCATTCAAAAATAATTTAATATT
Length of connected seq. 1229
Full length Seq ID VSJ617E
Full length Seq.
>VSJ617E.Seq
AGAGAATCAACTTTATACAAAACCAATTGAATTTAAAGAAATTAAATTATTGGAGAAATT
AGAATCAAATTCAAAATCAAGTAATATTTGGCAAATTGAATATAAATCAACTCAATTAGT
ATTAAAACAACCAAAAGATCAAGATTCTGATAAAAATATTGAAAAAAGAAAACAATTATT
TAATGGTAGTAATGTTAGTGGAAGTAATAATAGTGGCAGCAGTGGTGGTAATAATCATAA
TCATCATCATTGTAATAATAGTAATGGTAGTAATAGTGAAGTTATACCAAGTAAATATAC
AATGATTCAACATAAAAATCTTGGATTATTAGTTGGTTGGTGTGGTGATTCAATTATTTT
TGAAAGTTTTAAAGGTATGAATTCATTACATGACCTTAATTCATAGGGATGGTTTAAAGA
TTGATATGGCACTATTTATAAAGATAAGTAAGGACATTGCAAGCGTTATGGGATTATTAC
ATTCAAAAGATGTTGCACATGGTAATTTAACAAGTAGGTCCATTTATCTTGATAGATTTC
AAATTGTAAAAGTATCATTCCCAAAGTTGAATGCTACCGATTTAAATAATCCAGCCATTG
AACCAAGATATATGGCACCGGAAATGACAAGAATGGAAGAGGATCAAATATCATGTTCAA
TCGATGTCTATGCCTATGCCTTTGTTTTATGGGAGGCATTGACTTCGCATTTACCATTTA
GAAAATTCAATGATATCTCTGTGGCTGCCAAAGTCGCCTATGAAAATCTAAGACCAAAGA
TACCAACTTCATGTCCATTGATCATCCGTAAACTAATTAATAGATGCTGGGCTCCTCTAC
CAAGTGATAGACCAACTTTCAATGATATCTTAAAACTTTTCGATCATTTGGAGGGAAAAT
TATTCTTTTCTTCACCAGGTATACTTTGGTCGTTAAATAATGATCAAGAGGTGGAGAGAG
AACTTCAAAAGAAAGAGCGTTTCAATGAAATTACAGAGTTTTTACGGGAAAGAAAATACA
TTCTCAATCATTCAAAAATAATTTAATATT
Length of full length seq. 1050