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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA802
Library AH
(Link to library)
Clone ID AHA802
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16515-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AHA802 (AHA802Q) /CSM/AH/AHA8-A/AHA802Q.Seq.d/
ATTTGTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAG
TTGGAAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTG
TCAATGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTT
ACAAGAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCAT
TCCCAAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACT
ATAGGCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATA
CAAGCAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATTAGTA
GTAGTGGGATTCAGATTTTGAGTACAACTNTATGAAACTGGTGCCATACCCAATGTACCA
ATTCTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACATCA
ATTAAAATTTATTCAAATAACATTCTTAAAGACACCAACCCTAGTGGTGCACTAGAXXXX
XXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVVNVKMDTNGVKYYFNALEFPY
KNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCDYRRRVKRIEIERTILSLSFDT
SKNQFVTYLNPGCGPFNISSSGIQILSTTX*nwchtqctnsr***ryfnysr**slqyin
*nlfk*hs*rhqp*wct---
Translated Amino Acid sequence (All Frames) 
Frame A:
icyyy*fvnfyllnqval*klek*nvqkn*krfyyimkqlsm*kwiqme*niilmhssfl
tricyai*ililnshqkshhsqiylqqvetsgspstflatigeesne*k*kelyylsvli
qakissllt*iqgvvlsilvvvgfrf*vqlyetgaipnvpildddkgiltiqgsnlynts
ikiysnnilkdtnpsgal---


Frame B:
fviiisl*ific*ikllfkswknrmykrirnvfii**nscqckngykwskilf*ctrvsl
qesvmrfky*y*ihtrnpiipkytynrwrlrvhlqlslrl*aksqtnrnrknyiisqf*y
kqksvryllesrvwsfqy***wdsdfeynxmklvpypmyqfsmmikvf*lfkvvistihq
lkfiqitflktptlvvh*---


Frame C:
LLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVVNVKMDTNGVKYYFNALEFPY
KNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCDYRRRVKRIEIERTILSLSFDT
SKNQFVTYLNPGCGPFNISSSGIQILSTTX*nwchtqctnsr***ryfnysr**slqyin
*nlfk*hs*rhqp*wct---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA802 (AHA802Q) /CSM/AH/AHA8-A/AHA802Q.Seq.d/                       1176   0.0
SHJ471 (SHJ471Q) /CSM/SH/SHJ4-C/SHJ471Q.Seq.d/                       1166   0.0
SHD534 (SHD534Q) /CSM/SH/SHD5-B/SHD534Q.Seq.d/                       1166   0.0
SHD454 (SHD454Q) /CSM/SH/SHD4-C/SHD454Q.Seq.d/                       1166   0.0
SHD373 (SHD373Q) /CSM/SH/SHD3-D/SHD373Q.Seq.d/                       1166   0.0
CHE868 (CHE868Q) /CSM/CH/CHE8-C/CHE868Q.Seq.d/                       1166   0.0
AHR423 (AHR423Q) /CSM/AH/AHR4-A/AHR423Q.Seq.d/                       1166   0.0
AHL138 (AHL138Q) /CSM/AH/AHL1-B/AHL138Q.Seq.d/                       1166   0.0
AHJ367 (AHJ367Q) /CSM/AH/AHJ3-C/AHJ367Q.Seq.d/                       1166   0.0
AHJ363 (AHJ363Q) /CSM/AH/AHJ3-C/AHJ363Q.Seq.d/                       1166   0.0
own update 2002. 9.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.   890   0.0    2
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2.    42   1e-06  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   2e-06  19
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   1e-05  21
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    32   3e-05  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   4e-05  17
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   6e-05  11
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   9e-05  10
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    40   1e-04  10
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   2e-04  19
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   225   9e-80
FJ374891_1(FJ374891|pid:none) Dictyostelium discoideum strain QS...   225   2e-79
FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   225   5e-79
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   221   6e-79
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   221   6e-79
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   221   2e-78
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   222   5e-78
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   221   2e-77
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   221   2e-77
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   225   3e-77
protein update 2009. 4.27
PSORT 

 psg: 0.83  gvh: 0.68  alm: 0.31  top: 0.60  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.13  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for AHA802 is nuc
5' end seq. ID AHA802F
5' end seq. 
>AHA802F.Seq
ATTTGTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAG
TTGGAAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTG
TCAATGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTT
ACAAGAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCAT
TCCCAAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACT
ATAGGCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATA
CAAGCAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATTAGTA
GTAGTGGGATTCAGATTTTGAGTACAACTNTATGAAACTGGTGCCATACCCAATGTACCA
ATTCTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACATCA
ATTAAAATTTATTCAAATAACATTCTTAAAGACACCAACCCTAGTGGTGCACTAGANNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -